Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011132.2 Olea europaea HOM05D003769 ORTHO05D004521 5.3e-104 380.9 182 100.0
Nitab4.5_0001599g0030 Nicotiana tabacum HOM05D003769 ORTHO05D004521 4.8e-81 304.7 156 89.1
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 9.1e-80 300.4 157 86.0
Nitab4.5_0004412g0040 Nicotiana tabacum HOM05D003769 ORTHO05D004521 1.2e-79 300.1 156 88.5
CAN.G438.128 Capsicum annuum HOM05D003769 ORTHO05D004521 2.7e-79 298.9 156 87.2
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 5.9e-79 297.7 156 87.2
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 2.9e-78 295.4 170 82.4
Solyc03g119650.3 Solanum lycopersicum HOM05D003769 ORTHO05D004521 3.8e-78 295.0 156 85.9
Sopen03g038480 Solanum pennellii HOM05D003769 ORTHO05D004521 3.8e-78 295.0 156 85.9
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 5.5e-77 291.2 169 81.1
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 5.5e-77 291.2 170 80.0
Lalb_Chr05g0222571 Lupinus albus HOM05D003769 ORTHO05D004521 9.4e-77 290.4 156 84.6
Lj4g0007480 Lotus japonicus HOM05D003769 ORTHO05D004521 1.6e-76 289.7 156 84.0
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 1.6e-76 289.7 170 80.6
Thecc.03G031600 Theobroma cacao HOM05D003769 ORTHO05D004521 2.7e-76 288.9 156 85.3
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 6.1e-76 287.7 170 78.8
CiPaw.15G128600 Carya illinoinensis HOM05D003769 ORTHO05D004521 1.0e-75 287.0 170 78.8
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 1.0e-75 287.0 170 77.1
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 1.4e-75 286.6 170 81.2
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 1.4e-75 286.6 156 82.7
Psat7g012720 Pisum sativum HOM05D003769 ORTHO05D004521 1.8e-75 286.2 170 78.8
Actinidia31020 Actinidia chinensis HOM05D003769 ORTHO05D004521 3.0e-75 285.4 170 78.2
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 3.0e-75 285.4 170 78.8
Dinv07347 Davidia involucrata HOM05D003769 ORTHO05D004521 4.0e-75 285.0 170 80.6
Glyma.08G040500 Glycine max HOM05D003769 ORTHO05D004521 4.0e-75 285.0 156 83.3
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 5.2e-75 284.6 168 78.0
Cfa019795 Carpinus fangiana HOM05D003769 ORTHO05D004521 8.8e-75 283.9 170 77.6
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 8.8e-75 283.9 170 78.8
Duzib084G0296 Durio zibethinus HOM05D003769 ORTHO05D004521 8.8e-75 283.9 170 78.8
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 8.8e-75 283.9 170 78.8
Sed0003499 Sechium edule HOM05D003769 ORTHO05D004521 2.0e-74 282.7 170 78.2
Duzib068G0584 Durio zibethinus HOM05D003769 ORTHO05D004521 2.6e-74 282.3 170 78.2
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 2.6e-74 282.3 163 79.1
PGR083G2820 Punica granatum HOM05D003769 ORTHO05D004521 3.4e-74 282.0 170 78.2
Aqoxy3G00338 Aquilegia oxysepala HOM05D003769 ORTHO05D004521 5.7e-74 281.2 156 82.7
Gohir.D09G173300 Gossypium hirsutum HOM05D003769 ORTHO05D004521 5.7e-74 281.2 170 78.2
Phvul.002G315300 Phaseolus vulgaris HOM05D003769 ORTHO05D004521 5.7e-74 281.2 156 84.0
Rhsim08G0135600 Rhododendron simsii HOM05D003769 ORTHO05D004521 5.7e-74 281.2 157 83.4
Cpa.g.sc13.14 Carica papaya HOM05D003769 ORTHO05D004521 7.5e-74 280.8 170 75.9
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 7.5e-74 280.8 170 78.2
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 1.3e-73 280.0 170 77.6
TPR.G32677 Trifolium pratense HOM05D003769 ORTHO05D004521 1.7e-73 279.6 170 77.1
TAR629G2778 Trochodendron aralioides HOM05D003769 ORTHO05D004521 2.2e-73 279.3 170 77.6
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 2.8e-73 278.9 170 78.2
Lsat_1_v5_gn_8_146581 Lactuca sativa HOM05D003769 ORTHO05D004521 3.7e-73 278.5 156 80.1
ClCG04G011210 Citrullus lanatus HOM05D003769 ORTHO05D004521 4.8e-73 278.1 170 77.1
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 1.4e-72 276.6 170 75.9
VMungo0251G1242 Vigna mungo HOM05D003769 ORTHO05D004521 1.4e-72 276.6 156 82.1
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 2.4e-72 275.8 170 77.1
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 2.4e-72 275.8 170 75.9
arahy.Tifrunner.gnm1.ann1.9P0TZR Arachis hypogaea HOM05D003769 ORTHO05D004521 3.1e-72 275.4 170 75.3
arahy.Tifrunner.gnm1.ann1.A9KR6W Arachis hypogaea HOM05D003769 ORTHO05D004521 3.1e-72 275.4 170 75.3
PSO017G1990 Papaver somniferum HOM05D003769 ORTHO05D004521 3.1e-72 275.4 170 75.9
PSO478G4026 Papaver somniferum HOM05D003769 ORTHO05D004521 3.1e-72 275.4 170 75.9
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 5.4e-72 274.6 156 81.4
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 9.1e-72 273.9 170 74.1
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 9.1e-72 273.9 170 74.7
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 2.7e-71 272.3 154 79.9
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 3.5e-71 271.9 169 74.6
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 4.5e-71 271.6 167 76.6
CANSAT80G0780 Cannabis sativa HOM05D003769 ORTHO05D004521 5.9e-71 271.2 170 75.9
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 1.0e-70 270.4 170 75.3
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 1.0e-70 270.4 170 75.9
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.3e-70 270.0 170 74.7
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.3e-70 270.0 170 73.5
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 1.3e-70 270.0 170 74.7
Thhalv10011186m.g Eutrema salsugineum HOM05D003769 ORTHO05D004521 2.2e-70 269.2 156 78.8
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 2.9e-70 268.9 170 73.5
FvH4_5g12450 Fragaria vesca HOM05D003769 ORTHO05D004521 3.8e-70 268.5 170 72.9
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 5.0e-70 268.1 170 73.5
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 5.0e-70 268.1 170 73.5
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 5.0e-70 268.1 170 73.5
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 5.0e-70 268.1 170 72.9
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 8.5e-70 267.3 169 75.1
FAN18G2555 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.1e-69 266.9 170 72.9
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 1.5e-69 266.5 170 72.9
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 1.5e-69 266.5 170 72.9
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 1.9e-69 266.2 154 77.9
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 2.5e-69 265.8 169 72.2
TWI81G0419 Tripterygium wilfordii HOM05D003769 ORTHO05D004521 2.5e-69 265.8 171 73.1
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 4.2e-69 265.0 170 72.9
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 4.2e-69 265.0 170 72.9
Prupe.5G219600 Prunus persica HOM05D003769 ORTHO05D004521 4.2e-69 265.0 169 74.0
QL10p023978 Quercus lobata HOM05D003769 ORTHO05D004521 4.2e-69 265.0 170 73.5
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 9.4e-69 263.8 170 72.4
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 1.2e-68 263.5 170 72.4
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 1.6e-68 263.1 170 72.9
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 1.6e-68 263.1 170 72.4
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 1.6e-68 263.1 156 76.9
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 3.6e-68 261.9 170 71.8
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 8.0e-68 260.8 170 71.8
AUR62025881 Chenopodium quinoa HOM05D003769 ORTHO05D004521 8.0e-68 260.8 170 72.4
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 3.0e-67 258.8 154 77.3
MBI04_g31736_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 5.2e-67 258.1 170 71.2
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 5.2e-67 258.1 170 72.9
HanXRQChr17g0558431 Helianthus annuus HOM05D003769 ORTHO05D004521 1.2e-66 256.9 154 76.6
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 2.8e-65 252.3 168 69.0
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 1.4e-64 250.0 171 71.3
AUR62025889 Chenopodium quinoa HOM05D003769 ORTHO05D004521 5.0e-62 241.5 156 72.4
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 7.3e-61 237.7 156 71.2
Haze_18653 Corylus avellana HOM05D003769 ORTHO05D004521 3.0e-59 232.3 185 62.7
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 5.7e-58 228.0 165 67.3
Mapoly0058s0028 Marchantia polymorpha HOM05D003769 ORTHO05D004521 5.7e-58 228.0 156 67.3
SMO228G0026 Selaginella moellendorffii HOM05D003769 ORTHO05D004521 4.9e-57 224.9 157 66.9
AagrBONN_evm.TU.Sc2ySwM_368.2777 Anthoceros agrestis HOM05D003769 ORTHO05D004521 5.9e-55 218.0 157 62.4
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 1.3e-54 216.9 171 63.7
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 2.3e-54 216.1 157 63.7
unitig_8.g3058 Utricularia gibba HOM05D003769 ORTHO05D004521 2.4e-48 196.1 129 70.5
Sabra12G0044000 Salix brachista HOM05D003769 ORTHO05D004521 9.2e-48 194.1 119 75.6
A03p53530 Brassica napus HOM05D003769 ORTHO05D004521 2.9e-41 172.6 124 66.9
BraA03t14419Z Brassica rapa HOM05D003769 ORTHO05D004521 8.3e-41 171.0 124 66.1
AUR62029853 Chenopodium quinoa HOM05D003769 ORTHO05D004521 4.1e-40 168.7 117 70.1
COL.COLO4_16280 Corchorus olitorius HOM05D003769 ORTHO05D004521 5.4e-40 168.3 99 79.8
BraA01t03104Z Brassica rapa HOM05D003769 ORTHO05D004521 1.1e-37 160.6 124 63.7
FvH4_5g12360 Fragaria vesca HOM05D003769 ORTHO05D004521 4.4e-34 148.7 151 52.3
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 1.3e-33 147.1 90 75.6
SHI30396 Sapria himalayana HOM05D003769 ORTHO05D000002 1.7e-33 146.7 86 74.4
AUR62043749 Chenopodium quinoa HOM05D003769 ORTHO05D004521 4.9e-33 145.2 90 71.1
AUR62043128 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.9e-32 143.3 89 70.8
Aa31LG5G11570 Aethionema arabicum HOM05D003769 ORTHO05D004521 7.1e-32 141.4 127 56.7
A04p16410 Brassica napus HOM05D003769 ORTHO05D004521 1.5e-29 133.7 118 56.8
A01p29770 Brassica napus HOM05D003769 ORTHO05D004521 7.3e-29 131.3 117 56.4
MBI04_g48188_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 2.2e-25 119.8 71 77.5
FAN18G1748 Fragaria x ananassa HOM05D003769 ORTHO05D004521 6.4e-25 118.2 86 64.0
FvH4_5g12410 Fragaria vesca HOM05D003769 ORTHO05D004521 7.1e-24 114.8 117 51.3
C06p38310 Brassica napus HOM05D003769 ORTHO05D004521 2.7e-23 112.8 98 56.1
MCO01G197 Micromonas commoda HOM05D003769 ORTHO05D004521 3.1e-19 99.4 170 35.3
FvH4_5g12390 Fragaria vesca HOM05D001785 ORTHO05D004521 1.5e-18 97.1 58 70.7
FAN18G2253 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.5e-18 97.1 58 70.7
CBR_g48868 Chara braunii HOM05D007859 ORTHO05D009320 3.0e-14 82.8 63 58.7
MD06G1214100 Malus domestica HOM05D003769 ORTHO05D004521 5.8e-10 68.6 58 56.9
BolC7t43935H Brassica oleracea HOM05D003769 ORTHO05D004521 2.7e-07 59.7 49 59.2
Cre07.g352900 Chlamydomonas reinhardtii HOM05D003769 ORTHO05D004521 7.9e-07 58.2 158 30.4


User provided reference genes

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