Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 8.9e-224 780.0 414 100.0
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 2.3e-126 456.4 415 61.9
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.1e-125 454.1 414 63.5
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 8.6e-110 401.4 418 55.5
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 8.6e-102 374.8 419 53.9
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.8e-99 367.1 419 54.4
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 5.2e-99 365.5 425 53.4
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.1e-96 357.8 420 52.4
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 9.3e-96 354.8 420 52.6
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 4.6e-95 352.4 429 51.7
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.0e-94 349.7 428 52.8
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 3.0e-94 349.7 425 51.1
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 1.1e-93 347.8 379 55.1
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.5e-93 346.7 410 53.7
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 7.3e-93 345.1 418 51.9
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.3e-92 344.4 447 49.7
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.6e-92 342.8 421 52.5
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 1.8e-91 340.5 393 53.9
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 6.9e-91 338.6 418 50.7
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 2.0e-90 337.0 430 50.0
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 4.5e-90 335.9 394 51.3
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 1.7e-89 334.0 471 47.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.9e-89 333.2 419 49.6
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 4.9e-89 332.4 481 45.7
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 4.9e-89 332.4 385 52.5
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 8.4e-89 331.6 424 48.6
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.9e-88 330.5 485 45.2
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 7.1e-88 328.6 457 46.6
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.2e-87 327.8 414 49.0
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.7e-87 326.6 418 51.9
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 6.0e-87 325.5 457 46.4
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.0e-86 324.7 472 45.1
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 3.0e-86 323.2 480 44.8
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 8.7e-86 321.6 414 48.8
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.5e-85 320.9 425 50.4
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 4.3e-85 319.3 417 49.6
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.8e-84 316.6 472 44.7
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 6.9e-83 312.0 417 49.2
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 4.5e-82 309.3 381 50.1
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 5.8e-82 308.9 433 47.8
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 2.2e-81 307.0 426 46.7
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 6.4e-81 305.4 473 44.2
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 1.1e-80 304.7 417 47.5
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 6.0e-79 298.9 423 46.1
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 3.0e-78 296.6 379 49.3
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 8.7e-78 295.0 422 47.2
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 8.7e-78 295.0 403 46.7
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 3.1e-75 286.6 413 46.7
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 7.6e-74 282.0 456 42.8
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.3e-73 281.2 336 50.9
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.7e-73 280.8 383 45.7
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 4.2e-72 276.2 438 43.8
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 5.5e-72 275.8 431 44.3
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 9.3e-72 275.0 405 46.4
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 3.5e-71 273.1 340 48.2
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 7.9e-71 271.9 431 43.6
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.8e-70 270.8 400 46.2
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 8.7e-70 268.5 307 53.4
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 8.2e-68 261.9 469 40.7
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 6.9e-67 258.8 370 46.8
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 2.2e-65 253.8 282 54.3
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 8.5e-65 251.9 266 57.1
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 1.4e-64 251.1 434 41.5
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 3.2e-64 250.0 471 40.6
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.2e-64 250.0 273 55.7
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 7.2e-64 248.8 478 38.9
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 7.2e-64 248.8 266 53.0
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.2e-63 248.1 410 42.9
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 3.6e-63 246.5 473 41.0
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 6.1e-63 245.7 441 40.1
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 6.1e-63 245.7 428 41.8
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.0e-62 245.0 365 45.5
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 2.3e-62 243.8 409 41.6
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.1e-59 235.0 269 53.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.8e-59 234.2 335 46.9
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 9.1e-59 231.9 397 42.8
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 1.0e-57 228.4 248 53.2
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 8.5e-57 225.3 385 42.3
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 1.2e-55 221.5 413 40.4
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 2.7e-55 220.3 335 45.1
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 4.6e-55 219.5 428 37.6
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.0e-54 218.4 225 57.8
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 3.9e-54 216.5 273 45.4
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.1e-53 214.9 430 37.9
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.5e-53 214.5 470 36.0
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.5e-53 214.5 427 39.1
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 4.4e-53 213.0 467 35.5
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 7.4e-53 212.2 446 36.8
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 3.7e-52 209.9 414 39.4
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.8e-52 209.5 298 47.3
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 2.4e-51 207.2 448 35.3
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 3.1e-51 206.8 433 37.9
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.5e-50 204.5 447 36.7
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.6e-50 203.8 250 50.8
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.3e-49 201.4 402 36.6
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 2.2e-49 200.7 398 36.7
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.9e-49 200.3 387 35.9
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 6.5e-49 199.1 454 34.1
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.1e-48 198.4 462 33.8
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 3.2e-48 196.8 198 60.1
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 9.4e-48 195.3 450 36.4
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.4e-46 191.4 468 36.5
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 5.2e-46 189.5 282 48.2
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 1.2e-42 178.3 292 41.1
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 2.0e-42 177.6 262 43.1
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.9e-40 171.0 473 34.5
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.1e-39 167.5 422 34.6
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.0e-38 165.2 337 36.8
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.2e-37 161.8 249 40.2
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.3e-37 160.2 324 36.7
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 3.4e-29 133.7 138 55.1
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 3.4e-29 133.7 336 32.7
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.3e-28 131.7 141 61.0
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 3.7e-28 130.2 351 32.2
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.3e-28 129.4 147 55.8
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.3e-25 120.9 254 36.2
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 7.2e-24 115.9 102 60.8
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 4.7e-23 113.2 232 37.9
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 8.8e-22 109.0 427 30.7
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 6.3e-20 102.8 87 69.0
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 5.4e-19 99.8 86 72.1
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 6.6e-17 92.8 114 42.1
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 1.5e-16 91.7 91 53.8
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 3.0e-14 84.0 118 41.5
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.0e-14 83.6 80 47.5
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.4e-13 80.5 86 61.6
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 1.4e-11 75.1 103 51.5
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.4e-11 73.2 158 35.4
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.4e-11 73.2 159 35.8
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 5.4e-11 73.2 151 35.1
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 7.0e-11 72.8 62 62.9
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 9.2e-11 72.4 72 48.6
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.5e-10 70.5 69 44.9
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 1.3e-09 68.6 66 65.2
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 1.5e-08 65.1 74 50.0
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.4e-06 58.5 95 40.0
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.3e-06 57.8 82 41.5


User provided reference genes

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