Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.1e-141 506.5 247 100.0
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.1e-141 506.5 247 100.0
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.6e-103 379.8 250 77.2
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 2.8e-100 369.0 253 73.1
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.4e-94 350.1 261 67.4
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.4e-91 340.1 248 68.5
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.0e-90 336.3 210 77.6
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 6.5e-89 331.3 243 66.3
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.2e-88 328.9 247 66.4
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.2e-88 328.9 247 66.4
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 1.2e-87 327.0 253 67.6
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.1e-87 326.2 231 72.3
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 2.7e-87 325.9 205 76.6
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 4.7e-87 325.1 235 67.2
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 4.7e-87 325.1 237 65.0
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.7e-87 325.1 203 76.8
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.7e-87 325.1 227 70.5
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 6.1e-87 324.7 232 67.7
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 3.4e-85 318.9 202 74.3
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 5.7e-85 318.2 249 64.3
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 4.9e-84 315.1 252 64.3
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 6.3e-84 314.7 218 70.6
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 9.1e-83 310.8 202 72.8
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 2.0e-82 309.7 246 62.2
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.3e-81 307.0 209 72.2
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 5.0e-81 305.1 216 69.9
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 5.0e-81 305.1 200 73.0
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 8.6e-81 304.3 204 71.1
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.3e-80 302.4 227 67.4
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.3e-80 302.4 227 67.4
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 4.2e-80 302.0 223 66.8
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 7.2e-80 301.2 209 70.8
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.1e-79 299.7 221 66.5
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 4.7e-79 298.5 177 80.2
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.4e-75 287.0 248 60.5
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.0e-74 283.1 240 60.0
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.5e-74 282.3 244 55.7
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 3.5e-74 282.3 201 67.2
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 7.8e-74 281.2 201 66.7
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.0e-73 280.8 225 60.4
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.3e-73 280.4 209 65.6
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.3e-73 280.4 201 66.2
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.3e-73 280.4 236 58.1
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.7e-73 280.0 198 72.7
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.3e-73 279.6 209 65.1
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 2.3e-73 279.6 197 65.0
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.9e-73 278.9 198 68.2
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 6.6e-73 278.1 201 68.7
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 8.6e-73 277.7 224 60.7
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 8.6e-73 277.7 222 64.9
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 8.6e-73 277.7 226 61.5
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.5e-72 276.9 191 68.1
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 2.5e-72 276.2 191 68.1
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 7.3e-72 274.6 191 67.5
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 7.3e-72 274.6 191 67.5
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 2.1e-71 273.1 201 65.2
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.0e-70 268.9 210 61.9
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 9.8e-69 264.2 208 61.5
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 4.9e-68 261.9 201 62.2
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-67 260.8 201 62.2
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.1e-67 260.8 201 62.2
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.9e-67 260.0 201 61.7
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.9e-67 260.0 211 60.2
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 2.4e-67 259.6 213 59.2
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.4e-67 258.5 208 60.1
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 5.4e-67 258.5 191 62.8
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 5.4e-67 258.5 191 62.8
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 7.0e-67 258.1 197 61.9
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 9.2e-67 257.7 201 61.7
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.2e-66 257.3 173 69.4
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.6e-66 256.9 231 60.2
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 2.7e-66 256.1 195 62.1
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.0e-65 254.2 208 60.6
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.3e-65 253.8 175 68.0
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.5e-64 250.4 217 59.4
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.3e-64 249.2 208 55.8
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 9.5e-64 247.7 220 53.6
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 9.5e-64 247.7 227 54.2
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 8.1e-63 244.6 215 54.4
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.4e-62 243.8 184 63.0
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 6.8e-62 241.5 217 53.9
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.7e-60 236.9 185 63.2
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.2e-60 236.5 213 53.5
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.1e-59 232.3 217 53.0
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 7.1e-59 231.5 217 52.1
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.5e-58 229.2 195 54.9
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 7.8e-58 228.0 197 57.9
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 7.8e-58 228.0 198 54.0
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.0e-57 227.6 227 49.8
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 2.3e-57 226.5 255 48.6
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 5.1e-57 225.3 147 68.7
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 5.1e-57 225.3 151 73.5
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 3.3e-56 222.6 147 68.7
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.3e-56 222.2 240 46.2
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.8e-55 219.5 203 49.3
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.1e-54 217.6 193 52.8
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.8e-54 216.9 157 63.1
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 5.8e-53 211.8 140 70.7
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 7.6e-53 211.5 248 43.5
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.3e-52 210.7 204 48.0
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 4.1e-51 205.7 225 43.6
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 5.4e-51 205.3 194 53.1
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.2e-50 204.1 203 48.3
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-50 203.8 140 67.1
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 7.8e-50 201.4 204 44.6
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.7e-49 200.3 204 44.6
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 3.9e-49 199.1 205 46.3
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.1e-48 197.6 200 47.5
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 2.5e-48 196.4 208 47.6
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 3.6e-47 192.6 169 53.3
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 4.7e-47 192.2 215 44.2
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.7e-47 192.2 225 42.2
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 5.2e-46 188.7 204 46.1
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 5.2e-46 188.7 190 46.8
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 6.8e-46 188.3 199 45.2
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.5e-45 187.2 191 44.5
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 3.8e-44 182.6 229 43.2
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.9e-44 182.2 237 42.2
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 8.4e-44 181.4 186 46.8
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 5.4e-43 178.7 193 47.2
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 7.1e-43 178.3 224 43.3
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.1e-42 176.8 196 43.9
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 7.8e-42 174.9 172 47.7
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.3e-41 174.1 205 38.5
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 8.7e-41 171.4 192 45.3
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.1e-40 171.0 254 39.4
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 2.5e-40 169.9 164 51.2
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 4.3e-40 169.1 237 40.5
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 9.6e-40 167.9 190 43.7
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 1.3e-39 167.5 242 38.4
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.6e-39 166.0 168 51.8
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.1e-38 164.5 201 40.8
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.1e-38 164.5 213 42.3
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-38 163.7 242 38.0
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 3.1e-38 162.9 156 48.7
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 4.0e-38 162.5 210 39.0
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.2e-37 161.0 214 38.8
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.2e-37 161.0 151 51.7
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 7.6e-37 158.3 194 44.3
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.7e-36 157.1 212 40.6
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 8.4e-36 154.8 237 38.8
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 1.3e-33 147.5 225 38.2
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.1e-32 144.4 195 40.5
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 7.3e-32 141.7 195 39.0
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 8.1e-31 138.3 189 39.2
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-30 137.1 198 39.9
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.2e-26 124.4 189 36.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 2.7e-26 123.2 81 67.9
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.8e-25 120.6 127 48.0
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.3e-25 120.2 127 48.0
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 5.1e-25 119.0 115 48.7
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.1e-24 117.9 150 43.3
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 2.9e-20 103.2 177 32.2
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 3.2e-19 99.8 197 33.5
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 2.3e-17 93.6 83 57.8
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 1.5e-16 90.9 70 70.0
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-16 90.1 75 56.0
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 9.0e-14 81.6 74 58.1
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.2e-13 81.3 196 26.5
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.0e-12 78.2 149 31.5
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 2.5e-11 73.6 121 33.9
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 5.5e-11 72.4 57 63.2
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 9.3e-11 71.6 75 50.7
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 3.0e-09 66.6 66 53.0
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 3.3e-08 63.2 177 23.7
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.1e-06 56.6 47 55.3


User provided reference genes

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