Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.2e-174 615.5 312 100.0
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 3.1e-144 515.4 316 84.2
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.5e-122 443.4 317 75.1
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.3e-122 442.2 315 72.4
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 3.7e-121 438.7 316 72.5
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 4.8e-121 438.3 317 71.9
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 4.8e-121 438.3 315 72.7
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 8.2e-121 437.6 291 78.0
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 4.1e-120 435.3 316 73.7
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.1e-120 435.3 315 71.4
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.3e-120 434.9 316 71.8
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.5e-119 433.3 316 71.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 4.5e-119 431.8 316 73.1
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 4.5e-119 431.8 316 73.1
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.7e-118 429.9 316 72.8
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.8e-118 428.7 337 68.5
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 3.2e-117 425.6 316 72.2
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.7e-116 422.5 316 71.8
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.7e-116 422.5 348 66.4
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 6.1e-116 421.4 315 70.5
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.0e-115 420.6 314 69.7
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.4e-115 420.2 316 69.6
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 5.1e-115 418.3 318 70.1
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 8.8e-115 417.5 315 70.5
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 7.4e-114 414.5 318 71.1
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.8e-112 409.8 316 69.9
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.0e-111 406.4 317 69.4
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 3.4e-111 405.6 316 70.9
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 4.5e-111 405.2 316 69.3
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 4.5e-111 405.2 315 69.2
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.2e-110 402.9 315 68.3
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.9e-110 402.5 316 68.7
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 5.0e-110 401.7 317 67.5
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 6.5e-110 401.4 315 70.2
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.4e-109 400.2 318 67.9
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.5e-109 399.4 315 67.0
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.5e-109 399.4 316 68.0
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.2e-109 399.1 314 67.5
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 4.2e-109 398.7 316 65.2
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 5.5e-109 398.3 323 65.0
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.1e-108 396.4 316 67.7
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 3.6e-108 395.6 316 64.6
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 6.1e-108 394.8 316 67.1
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 6.1e-108 394.8 315 65.7
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.9e-108 394.4 316 67.1
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 1.4e-107 393.7 315 67.3
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 3.9e-107 392.1 320 65.9
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 3.3e-106 389.0 315 67.0
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 5.7e-106 388.3 312 66.0
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.3e-105 387.1 316 66.8
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.2e-105 386.3 315 67.0
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 2.2e-105 386.3 316 66.1
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 3.7e-105 385.6 291 69.1
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 6.3e-105 384.8 291 69.1
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 8.2e-105 384.4 315 66.7
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 8.2e-105 384.4 317 65.6
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.8e-104 383.3 318 68.6
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 2.4e-104 382.9 325 64.6
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.1e-104 382.5 317 65.6
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 4.1e-104 382.1 315 63.2
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.6e-103 380.2 315 64.8
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.0e-103 379.8 323 63.8
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 4.5e-103 378.6 315 64.8
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 7.7e-103 377.9 299 67.2
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 7.7e-103 377.9 289 69.6
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 1.0e-102 377.5 316 64.6
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.0e-102 377.5 320 65.9
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.9e-102 375.9 315 63.8
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.9e-102 375.9 315 63.5
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 3.8e-102 375.6 316 63.3
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 5.0e-102 375.2 315 64.1
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 8.5e-102 374.4 319 62.7
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.5e-101 373.6 314 65.6
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 5.5e-101 371.7 288 68.1
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.2e-100 370.5 316 64.2
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.7e-100 369.4 314 64.6
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 4.7e-100 368.6 315 61.9
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.4e-99 367.1 315 62.5
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 3.0e-99 365.9 315 61.9
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 4.0e-99 365.5 316 61.4
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 4.0e-99 365.5 315 63.5
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 6.7e-99 364.8 318 63.2
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 8.8e-99 364.4 315 62.9
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.2e-98 364.0 313 64.2
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 2.0e-98 363.2 325 61.8
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 2.6e-98 362.8 315 61.9
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 5.7e-98 361.7 323 60.7
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 5.7e-98 361.7 323 60.7
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 7.5e-98 361.3 315 62.9
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 1.7e-97 360.1 283 68.2
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 2.2e-97 359.8 288 68.1
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 3.7e-97 359.0 316 62.7
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.4e-96 357.1 318 62.9
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.8e-96 356.7 315 61.6
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.8e-96 356.7 315 62.9
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 5.3e-96 355.1 315 62.5
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.6e-95 353.6 341 59.2
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 4.5e-95 352.1 312 61.9
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 5.9e-95 351.7 309 60.8
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 2.2e-94 349.7 312 63.1
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.2e-94 349.7 315 60.3
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 6.5e-94 348.2 314 60.2
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.1e-93 347.4 226 81.4
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 2.5e-93 346.3 316 59.8
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 9.4e-93 344.4 315 58.1
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 2.1e-92 343.2 313 60.1
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.1e-92 343.2 320 59.7
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.7e-92 342.8 316 59.5
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 6.1e-92 341.7 317 60.9
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 3.0e-91 339.3 291 62.5
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.2e-90 337.4 315 58.4
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.2e-90 337.4 316 58.5
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 2.6e-90 336.3 316 58.9
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 4.4e-90 335.5 317 59.0
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 5.7e-90 335.1 320 57.2
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 7.5e-90 334.7 284 63.0
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 9.8e-90 334.3 316 58.2
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 9.8e-90 334.3 317 58.7
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.2e-89 333.2 308 60.7
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 6.3e-89 331.6 323 57.6
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.2e-87 327.4 226 75.7
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 2.7e-87 326.2 316 57.3
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 2.7e-87 326.2 316 57.6
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-86 324.3 322 58.1
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.3e-86 323.9 316 58.5
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.9e-86 322.8 296 61.1
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.6e-84 317.0 336 55.1
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.8e-83 313.5 305 55.4
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.8e-83 311.6 363 51.2
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 1.5e-82 310.5 315 55.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.4e-82 309.3 331 54.7
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.3e-81 307.4 315 53.3
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.3e-81 307.4 322 52.8
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 8.3e-81 304.7 281 59.1
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 5.4e-80 302.0 290 58.3
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 2.0e-79 300.1 312 55.1
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.5e-79 299.3 294 54.8
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 2.9e-78 296.2 281 56.9
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 3.8e-78 295.8 284 58.5
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.9e-77 293.5 193 79.8
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.0e-75 287.7 313 52.4
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-74 284.3 281 55.9
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 1.5e-74 283.9 324 50.9
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 1.3e-73 280.8 320 51.2
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 2.4e-72 276.6 226 64.2
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.2e-68 264.2 312 50.6
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 6.4e-65 251.9 321 46.4
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 3.2e-56 223.0 200 65.5
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.7e-55 219.9 233 57.1
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 8.6e-54 214.9 133 85.7
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.4e-48 197.6 201 58.2
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 2.4e-43 180.3 138 71.0
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.4e-24 117.9 135 54.8
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 3.0e-22 110.2 84 61.9
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 2.4e-19 100.5 233 30.0
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 1.1e-16 91.7 310 26.5
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.2e-16 90.1 72 63.9
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 7.1e-16 89.0 66 74.2
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 7.9e-15 85.5 62 69.4
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 4.3e-13 79.7 100 46.0
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 1.7e-09 67.8 103 40.8
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 2.1e-07 60.8 120 35.0
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 1.3e-06 58.2 35 77.1
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 5.1e-06 56.2 36 75.0


User provided reference genes

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