Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 5.6e-84 314.3 168 100.0
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.1e-71 273.5 163 87.7
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.9e-71 272.7 163 87.7
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.5e-71 272.3 163 87.7
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.6e-70 269.6 163 86.5
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.6e-70 269.6 163 86.5
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.7e-70 268.9 163 86.5
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 3.5e-70 268.5 163 86.5
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 3.5e-70 268.5 163 87.1
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 4.6e-70 268.1 163 85.9
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 6.0e-70 267.7 163 87.1
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.0e-70 267.7 163 85.9
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 6.0e-70 267.7 163 85.9
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 7.9e-70 267.3 163 85.9
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 7.9e-70 267.3 163 85.3
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.8e-69 266.2 163 84.7
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.8e-69 266.2 163 85.3
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.8e-69 266.2 163 85.3
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 2.3e-69 265.8 163 86.5
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 3.0e-69 265.4 163 86.5
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 3.9e-69 265.0 163 84.0
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 5.1e-69 264.6 163 85.3
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 8.7e-69 263.8 163 83.4
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 1.1e-68 263.5 163 85.9
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 1.5e-68 263.1 163 84.7
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.5e-68 263.1 163 85.3
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.5e-68 263.1 163 84.7
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.9e-68 262.7 163 84.0
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 2.5e-68 262.3 163 84.7
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 5.7e-68 261.2 163 82.8
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 9.6e-68 260.4 163 84.0
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.6e-68 260.4 162 85.2
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 1.6e-67 259.6 163 82.2
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 2.1e-67 259.2 163 82.2
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.1e-67 259.2 163 82.8
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 2.8e-67 258.8 163 82.8
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.7e-67 258.5 163 82.2
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.8e-67 258.1 163 81.6
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 6.3e-67 257.7 163 81.6
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 6.3e-67 257.7 161 83.9
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 6.3e-67 257.7 163 82.8
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 8.2e-67 257.3 163 84.0
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 8.2e-67 257.3 163 81.6
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.1e-66 256.9 163 81.0
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.8e-66 256.1 163 81.0
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.8e-66 256.1 163 82.8
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 2.4e-66 255.8 163 80.4
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.4e-66 255.8 162 84.0
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 2.4e-66 255.8 163 83.4
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 4.1e-66 255.0 163 82.8
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 4.1e-66 255.0 163 81.6
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 4.1e-66 255.0 163 81.6
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 5.3e-66 254.6 163 80.4
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 5.3e-66 254.6 163 80.4
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 6.9e-66 254.2 163 82.8
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 6.9e-66 254.2 163 81.6
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 9.0e-66 253.8 166 83.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 9.0e-66 253.8 163 82.2
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 9.0e-66 253.8 163 80.4
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 9.0e-66 253.8 163 81.6
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 1.2e-65 253.4 163 81.6
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.2e-65 253.4 163 80.4
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.2e-65 253.4 164 80.5
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.2e-65 253.4 163 81.0
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.5e-65 253.1 163 81.6
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.5e-65 253.1 163 82.2
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.5e-65 253.1 163 81.0
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 3.4e-65 251.9 163 81.6
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 4.5e-65 251.5 163 79.1
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 4.5e-65 251.5 161 80.7
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 5.9e-65 251.1 163 78.5
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 7.6e-65 250.8 163 81.6
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.0e-64 250.4 163 79.8
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.0e-64 250.4 163 79.1
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 1.3e-64 250.0 163 79.1
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.3e-64 250.0 163 80.4
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 1.7e-64 249.6 163 78.5
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 1.7e-64 249.6 163 79.8
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.7e-64 249.6 163 79.1
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 1.7e-64 249.6 163 79.8
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.7e-64 249.6 163 79.1
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 2.9e-64 248.8 163 80.4
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.9e-64 248.8 161 81.4
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.9e-64 248.8 163 81.6
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 3.8e-64 248.4 163 79.1
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 6.5e-64 247.7 163 77.9
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 8.4e-64 247.3 163 76.7
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 8.4e-64 247.3 164 78.0
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 8.4e-64 247.3 163 79.1
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.1e-63 246.9 163 77.9
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.1e-63 246.9 163 78.5
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.4e-63 246.5 164 78.0
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 2.5e-63 245.7 163 76.7
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.5e-63 245.7 163 77.3
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 2.5e-63 245.7 163 78.5
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 3.2e-63 245.4 163 76.7
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 4.2e-63 245.0 152 84.2
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 5.5e-63 244.6 163 76.1
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 5.5e-63 244.6 163 77.3
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 7.2e-63 244.2 163 74.8
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 9.3e-63 243.8 163 77.9
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 9.3e-63 243.8 163 77.3
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 9.3e-63 243.8 163 77.9
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 9.3e-63 243.8 163 77.3
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.2e-62 243.4 163 77.3
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.6e-62 243.0 163 76.7
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.6e-62 243.0 163 76.7
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 2.7e-62 242.3 163 77.9
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 3.5e-62 241.9 163 76.7
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 3.5e-62 241.9 163 75.5
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 6.1e-62 241.1 163 76.1
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 6.1e-62 241.1 163 79.1
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 7.9e-62 240.7 163 75.5
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 7.9e-62 240.7 163 75.5
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 7.9e-62 240.7 163 76.7
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.3e-61 240.0 163 76.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.8e-61 239.6 175 73.1
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 3.0e-61 238.8 163 75.5
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.1e-61 238.0 175 73.1
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 8.7e-61 237.3 163 73.6
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.5e-60 236.5 163 74.8
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.9e-60 236.1 188 68.6
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 2.5e-60 235.7 163 77.3
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.6e-59 233.0 163 73.0
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 2.8e-59 232.3 163 71.8
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 3.7e-59 231.9 163 73.0
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 4.8e-59 231.5 163 73.0
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 6.3e-59 231.1 163 72.4
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.1e-58 230.3 163 71.2
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.1e-58 230.3 163 71.8
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 2.4e-58 229.2 163 71.2
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.0e-57 226.1 210 61.0
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.0e-56 223.8 163 69.3
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.0e-56 223.8 163 69.3
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 2.2e-56 222.6 163 71.8
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.7e-54 215.7 163 69.3
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.6e-54 215.3 139 81.3
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 6.1e-54 214.5 133 85.7
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.1e-54 214.5 162 69.1
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.7e-51 206.5 163 66.9
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 4.8e-51 204.9 163 65.6
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 9.1e-50 200.7 163 62.0
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.2e-49 200.3 160 62.5
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.1e-47 193.7 156 63.5
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 1.9e-47 193.0 159 61.6
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 6.1e-46 188.0 161 60.2
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 3.8e-40 168.7 139 65.5
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 4.7e-38 161.8 163 50.9
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.5e-31 140.2 164 54.3
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.5e-28 130.2 173 50.9
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 8.3e-27 124.4 141 54.6
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 5.2e-21 105.1 81 74.1
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 8.3e-19 97.8 76 73.7
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.8e-18 96.7 67 79.1
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.7e-17 92.8 138 43.5
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.9e-16 89.4 62 71.0
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 2.8e-14 82.8 150 37.3
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 4.0e-13 79.0 103 44.7
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 3.6e-06 55.8 36 83.3
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 6.2e-06 55.1 35 74.3
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 6.2e-06 55.1 35 74.3


User provided reference genes

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