Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 1.3e-124 449.9 256 100.0
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 1.4e-46 190.7 206 55.3
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 2.5e-43 179.9 207 51.7
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 2.5e-43 179.9 207 51.7
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 2.6e-40 169.9 196 52.6
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 7.1e-38 161.8 213 49.3
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 3.5e-37 159.5 209 47.4
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 1.3e-36 157.5 213 48.4
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 3.9e-36 156.0 205 48.3
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 1.9e-35 153.7 193 47.2
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 4.3e-35 152.5 193 47.2
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 9.6e-35 151.4 166 53.0
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.3e-34 151.0 209 46.9
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 3.7e-34 149.4 185 49.7
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 3.7e-34 149.4 186 46.8
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 4.8e-34 149.1 188 47.3
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 4.8e-34 149.1 206 47.1
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 6.2e-34 148.7 200 47.0
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 8.1e-34 148.3 206 46.6
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.4e-33 147.5 207 46.4
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 1.8e-33 147.1 206 42.7
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.8e-33 147.1 206 46.6
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 2.4e-33 146.7 193 47.7
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 2.4e-33 146.7 206 46.6
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 3.1e-33 146.4 169 51.5
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 5.3e-33 145.6 195 47.2
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 1.5e-32 144.1 195 46.7
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 2.6e-32 143.3 208 44.7
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 5.8e-32 142.1 208 44.2
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 5.8e-32 142.1 206 44.2
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 9.9e-32 141.4 204 46.6
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 1.7e-31 140.6 199 45.7
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 4.9e-31 139.0 184 46.2
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 8.4e-31 138.3 205 42.9
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 8.4e-31 138.3 208 40.4
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 8.4e-31 138.3 183 47.5
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 1.2e-29 134.4 189 46.6
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 2.1e-29 133.7 189 46.6
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 7.9e-29 131.7 204 44.1
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.3e-28 131.0 190 44.2
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 1.8e-28 130.6 216 40.7
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.8e-28 130.6 210 42.4
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 3.0e-28 129.8 212 39.6
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 5.1e-28 129.0 216 39.8
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 5.1e-28 129.0 216 39.8
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 5.1e-28 129.0 216 39.8
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 5.1e-28 129.0 155 48.4
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 6.7e-28 128.6 182 43.4
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 6.7e-28 128.6 181 43.6
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 1.5e-27 127.5 219 41.1
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 1.5e-27 127.5 121 58.7
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 1.5e-27 127.5 218 41.7
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.5e-27 127.5 202 42.1
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 3.3e-27 126.3 215 40.9
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 4.3e-27 125.9 183 45.9
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 4.3e-27 125.9 218 39.0
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 1.6e-26 124.0 218 39.9
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 2.8e-26 123.2 182 42.3
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 3.7e-26 122.9 183 44.3
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 6.2e-26 122.1 184 41.8
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 8.2e-26 121.7 214 39.3
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.1e-25 121.3 205 42.0
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 1.4e-25 120.9 184 41.8
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 3.1e-25 119.8 204 43.1
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.1e-25 119.8 179 46.4
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 4.0e-25 119.4 183 43.2
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 6.9e-25 118.6 184 44.6
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 9.0e-25 118.2 177 46.9
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 1.2e-24 117.9 183 39.3
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 1.5e-24 117.5 214 38.3
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 1.5e-24 117.5 214 38.3
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 1.5e-24 117.5 214 38.3
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 2.0e-24 117.1 210 40.5
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 2.6e-24 116.7 154 47.4
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 4.5e-24 115.9 212 39.2
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 4.5e-24 115.9 209 37.8
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 4.5e-24 115.9 196 40.3
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 1.0e-23 114.8 163 44.8
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 2.9e-23 113.2 214 38.3
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 2.9e-23 113.2 214 38.3
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.8e-23 112.8 152 50.0
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 3.8e-23 112.8 163 42.3
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 3.8e-23 112.8 220 35.9
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 8.4e-23 111.7 156 41.7
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 8.4e-23 111.7 179 41.9
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 1.1e-22 111.3 179 41.9
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 1.1e-22 111.3 134 50.7
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 1.9e-22 110.5 217 35.5
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 2.5e-22 110.2 184 43.5
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 3.2e-22 109.8 192 37.5
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 6.0e-21 105.5 153 44.4
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 2.3e-20 103.6 158 41.1
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.3e-20 103.6 179 39.7
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 3.9e-20 102.8 207 39.6
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 5.1e-20 102.4 104 58.7
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 1.5e-19 100.9 191 36.1
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 2.5e-19 100.1 150 42.7
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 6.3e-18 95.5 208 36.1
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 1.4e-14 84.3 181 33.7
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 5.1e-12 75.9 85 50.6
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 2.0e-11 73.9 120 39.2
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 5.7e-11 72.4 122 36.9
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.1e-09 68.2 166 30.7
CSS0003764 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 9.1e-09 65.1 129 40.3
MELO3C015488.2 Cucumis melo HOM05D004059 ORTHO05D004591 9.1e-09 65.1 191 32.5
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.6e-08 63.5 204 27.9
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 7.7e-08 62.0 147 34.0
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 7.7e-08 62.0 159 30.8
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 1.3e-07 61.2 142 37.3
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 1.3e-07 61.2 135 37.0
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 2.9e-07 60.1 95 38.9
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 2.9e-07 60.1 66 53.0
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 5.0e-07 59.3 138 36.2
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 8.5e-07 58.5 74 51.4
Lj6g0002908 Lotus japonicus HOM05D004059 ORTHO05D004591 8.5e-07 58.5 167 30.5
CiPaw.03G214200 Carya illinoinensis HOM05D004059 ORTHO05D004591 1.1e-06 58.2 134 32.1
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 1.1e-06 58.2 67 49.3
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 1.4e-06 57.8 68 51.5
CDE04G0617 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 1.4e-06 57.8 123 35.0
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 1.4e-06 57.8 118 38.1
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 1.4e-06 57.8 122 36.1
Sed0008144 Sechium edule HOM05D004059 ORTHO05D004591 1.4e-06 57.8 133 34.6
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 1.4e-06 57.8 137 35.0
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 1.9e-06 57.4 121 38.0
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 1.9e-06 57.4 124 37.9
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 2.5e-06 57.0 74 50.0
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 2.5e-06 57.0 127 35.4
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 3.2e-06 56.6 135 36.3
TAR624G0558 Trochodendron aralioides HOM05D004059 ORTHO05D004591 3.2e-06 56.6 139 30.9
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 4.2e-06 56.2 74 51.4
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 4.2e-06 56.2 74 51.4
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 4.2e-06 56.2 74 51.4
BolC9t57704H Brassica oleracea HOM05D004059 ORTHO05D004591 4.2e-06 56.2 114 38.6
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 4.2e-06 56.2 99 39.4
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 4.2e-06 56.2 124 37.9
Glyma.15G170500 Glycine max HOM05D004059 ORTHO05D004591 4.2e-06 56.2 129 37.2
Glyma.17G054000 Glycine max HOM05D004059 ORTHO05D004591 4.2e-06 56.2 124 37.9
Phvul.009G231600 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 4.2e-06 56.2 142 37.3
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 5.5e-06 55.8 125 35.2
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 5.5e-06 55.8 110 36.4
Migut.J00583 Erythranthe guttata HOM05D004059 ORTHO05D004591 5.5e-06 55.8 96 41.7
Lsat_1_v5_gn_7_36701 Lactuca sativa HOM05D004059 ORTHO05D004591 5.5e-06 55.8 100 40.0
BcaB05g22300 Brassica carinata HOM05D004059 ORTHO05D004591 7.2e-06 55.5 68 50.0
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 7.2e-06 55.5 125 35.2
CDE06G2535 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 7.2e-06 55.5 147 32.7
Os01g0195801 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 7.2e-06 55.5 72 43.1
BcaC04g20035 Brassica carinata HOM05D004059 ORTHO05D004591 9.4e-06 55.1 59 57.6
C09p48620 Brassica napus HOM05D004059 ORTHO05D004591 9.4e-06 55.1 59 57.6
CARHR270700 Cardamine hirsuta HOM05D004059 ORTHO05D004591 9.4e-06 55.1 74 50.0
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 9.4e-06 55.1 157 31.8
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 9.4e-06 55.1 126 35.7
QL02p062365 Quercus lobata HOM05D004059 ORTHO05D004591 9.4e-06 55.1 128 35.9
SGA_v2.0_scaffold62G21623 Striga asiatica HOM05D004059 ORTHO05D004591 9.4e-06 55.1 120 36.7


User provided reference genes

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