Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 8.7e-145 516.9 256 100.0
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.3e-113 412.5 253 79.4
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.2e-103 379.4 248 72.2
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.2e-95 352.8 399 49.4
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.2e-93 347.1 402 48.3
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 5.5e-91 338.2 407 46.4
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.2e-90 337.0 399 47.4
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 8.0e-90 334.3 403 46.2
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.8e-89 333.2 399 47.9
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.7e-87 326.6 356 49.7
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 6.3e-87 324.7 398 46.0
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.1e-86 323.9 401 46.1
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 2.4e-86 322.8 397 46.3
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 5.4e-86 321.6 399 46.1
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 5.4e-86 321.6 401 45.4
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.0e-86 321.2 400 45.8
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.7e-85 319.3 401 45.4
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 4.5e-85 318.5 401 45.4
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.0e-84 317.4 400 45.0
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.0e-84 317.4 399 46.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 2.3e-84 316.2 397 45.3
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 4.3e-83 312.0 397 45.1
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 4.3e-83 312.0 399 43.9
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 5.6e-83 311.6 398 44.7
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.2e-82 310.5 397 44.1
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.1e-82 309.7 385 44.4
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 3.6e-82 308.9 398 44.7
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 8.0e-82 307.8 396 44.4
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.4e-81 307.0 388 44.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 2.3e-81 306.2 376 44.9
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.0e-81 305.8 407 43.5
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.0e-81 305.8 396 44.4
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 3.0e-81 305.8 393 44.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 4.0e-81 305.4 399 42.6
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 4.0e-81 305.4 398 44.2
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 4.0e-81 305.4 398 44.2
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 5.2e-81 305.1 406 43.1
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 6.8e-81 304.7 393 43.5
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 6.8e-81 304.7 398 43.5
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.2e-80 303.9 396 43.7
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 2.0e-80 303.1 369 46.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.4e-80 302.4 396 43.7
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 5.8e-80 301.6 401 45.1
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.8e-80 301.6 398 43.7
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.7e-79 300.1 397 43.6
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.7e-79 300.1 393 43.0
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.7e-79 300.1 397 43.1
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.2e-79 299.7 392 43.6
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 2.9e-79 299.3 404 42.8
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.7e-79 298.9 398 43.2
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 3.7e-79 298.9 392 42.6
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 6.4e-79 298.1 400 42.8
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 8.3e-79 297.7 401 41.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.1e-78 297.4 394 41.9
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.1e-78 297.4 394 42.1
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.4e-78 297.0 394 43.4
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.4e-78 296.2 394 42.1
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.2e-78 295.8 400 42.0
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 3.2e-78 295.8 389 43.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 4.1e-78 295.4 394 42.1
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 4.1e-78 295.4 400 42.2
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 7.0e-78 294.7 400 42.2
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 7.0e-78 294.7 393 42.5
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 9.2e-78 294.3 411 42.8
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 2.0e-77 293.1 399 42.4
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 3.5e-77 292.4 400 43.0
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.5e-77 292.4 394 43.1
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 3.5e-77 292.4 397 42.1
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 6.0e-77 291.6 399 42.9
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 6.0e-77 291.6 399 42.9
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 6.0e-77 291.6 399 42.9
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 7.8e-77 291.2 399 42.9
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.0e-76 290.8 399 42.9
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.0e-76 290.8 397 42.3
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-76 290.4 396 42.4
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.3e-76 289.7 399 41.9
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.9e-76 288.9 394 42.6
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.9e-76 288.9 400 42.2
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 6.6e-76 288.1 397 40.8
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.5e-75 287.0 400 42.0
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.9e-75 286.6 399 42.4
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 2.5e-75 286.2 400 42.2
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.5e-75 286.2 399 40.6
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.3e-75 285.8 399 40.4
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 4.3e-75 285.4 394 42.4
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 4.3e-75 285.4 396 41.2
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 7.3e-75 284.6 399 40.9
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.2e-74 283.9 383 42.3
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.2e-74 283.9 383 42.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.1e-74 283.1 397 41.3
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.1e-74 283.1 400 41.5
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 2.1e-74 283.1 384 43.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.8e-74 282.7 397 41.1
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 8.0e-74 281.2 400 41.8
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 8.0e-74 281.2 392 41.3
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.4e-73 280.4 397 40.6
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 8.9e-73 277.7 412 40.0
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.2e-72 277.3 393 42.0
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 4.4e-72 275.4 411 40.4
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 7.5e-72 274.6 412 40.3
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 2.2e-71 273.1 380 40.5
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.9e-71 272.7 385 41.3
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.4e-70 268.5 384 41.1
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 7.0e-70 268.1 385 41.0
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.2e-69 267.3 383 38.9
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.0e-68 264.2 291 52.2
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.0e-68 264.2 382 38.7
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.3e-68 263.8 384 40.6
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.6e-68 261.5 380 38.9
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.6e-68 261.5 380 38.9
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.5e-67 259.6 380 38.9
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 5.6e-67 258.5 388 37.1
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 9.5e-67 257.7 388 37.4
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 8.1e-66 254.6 383 37.6
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.1e-65 254.2 404 38.1
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.5e-64 250.4 382 37.7
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 2.0e-64 250.0 383 36.8
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 2.0e-64 250.0 395 38.0
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.8e-64 248.4 369 39.0
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.8e-64 248.4 369 39.0
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.1e-62 244.2 381 38.8
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 7.1e-62 241.5 412 36.4
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 2.1e-61 240.0 381 37.5
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 8.6e-60 234.6 386 38.6
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 5.8e-56 221.9 409 34.0
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 6.4e-55 218.4 227 52.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 6.4e-55 218.4 302 44.4
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.6e-52 208.4 401 34.4
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 2.1e-50 203.4 400 33.2
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 3.6e-50 202.6 396 33.6
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 6.9e-49 198.4 156 56.4
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 9.3e-46 188.0 398 33.4
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.2e-45 187.6 374 34.8
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.5e-45 186.0 399 33.1
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 2.5e-43 179.9 402 31.8
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 3.3e-43 179.5 403 30.5
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 5.6e-43 178.7 204 48.0
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 7.3e-43 178.3 343 35.0
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 2.6e-40 169.9 390 32.1
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 2.9e-39 166.4 405 31.1
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.5e-35 153.3 245 40.4
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.3e-35 152.5 314 34.4
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.4e-33 146.7 192 45.8
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 3.1e-33 146.4 100 71.0
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 4.6e-29 132.5 156 41.0
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.8e-26 123.2 83 72.3
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 6.2e-26 122.1 72 77.8
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 6.2e-26 122.1 93 61.3
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.7e-23 114.0 84 63.1
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 3.8e-23 112.8 74 71.6
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 2.5e-11 73.6 170 30.0
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 1.1e-09 68.2 169 32.5
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.1e-09 66.6 39 74.4
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 9.1e-09 65.1 51 56.9
unitig_748.g7722 Utricularia gibba HOM05D004578 ORTHO05D005529 7.7e-08 62.0 112 36.6


User provided reference genes

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