Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 1.5e-42 175.6 83 100.0
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 2.2e-41 171.8 82 97.6
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 2.2e-41 171.8 82 97.6
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 2.9e-41 171.4 81 98.8
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 2.9e-41 171.4 82 97.6
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 3.8e-41 171.0 82 97.6
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 5.0e-41 170.6 83 96.4
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 8.5e-41 169.9 82 96.3
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 8.5e-41 169.9 82 96.3
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 8.5e-41 169.9 82 96.3
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 8.5e-41 169.9 82 96.3
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 8.5e-41 169.9 82 96.3
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 8.5e-41 169.9 82 96.3
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.1e-40 169.5 82 96.3
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.1e-40 169.5 82 96.3
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.1e-40 169.5 82 96.3
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 1.1e-40 169.5 82 96.3
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 1.1e-40 169.5 82 95.1
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.1e-40 169.5 82 96.3
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.4e-40 169.1 82 95.1
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.4e-40 169.1 82 96.3
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.4e-40 169.1 82 96.3
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.4e-40 169.1 82 96.3
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.4e-40 169.1 82 96.3
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.4e-40 169.1 81 97.5
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.4e-40 169.1 82 96.3
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.4e-40 169.1 82 96.3
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 1.9e-40 168.7 82 95.1
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.9e-40 168.7 82 96.3
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.9e-40 168.7 82 96.3
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.9e-40 168.7 82 95.1
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 1.9e-40 168.7 82 96.3
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 2.5e-40 168.3 82 95.1
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 2.5e-40 168.3 82 95.1
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 2.5e-40 168.3 82 95.1
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 2.5e-40 168.3 82 95.1
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.5e-40 168.3 82 95.1
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 2.5e-40 168.3 83 95.2
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 3.2e-40 167.9 82 95.1
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 3.2e-40 167.9 81 96.3
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.2e-40 167.9 81 96.3
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.2e-40 167.9 81 96.3
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 3.2e-40 167.9 82 95.1
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 3.2e-40 167.9 82 96.3
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 3.2e-40 167.9 81 96.3
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 3.2e-40 167.9 82 95.1
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 3.2e-40 167.9 82 95.1
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 3.2e-40 167.9 81 96.3
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 3.2e-40 167.9 81 96.3
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 3.2e-40 167.9 82 96.3
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 4.2e-40 167.5 82 95.1
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 4.2e-40 167.5 81 96.3
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 4.2e-40 167.5 82 95.1
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 4.2e-40 167.5 82 95.1
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 4.2e-40 167.5 81 96.3
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 4.2e-40 167.5 82 96.3
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 5.5e-40 167.2 82 93.9
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 5.5e-40 167.2 82 95.1
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 7.2e-40 166.8 81 96.3
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 7.2e-40 166.8 82 93.9
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 7.2e-40 166.8 82 93.9
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 9.4e-40 166.4 82 95.1
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 1.2e-39 166.0 83 95.2
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.2e-39 166.0 82 92.7
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.2e-39 166.0 82 95.1
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 1.2e-39 166.0 80 95.0
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 1.6e-39 165.6 82 93.9
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.6e-39 165.6 82 95.1
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.6e-39 165.6 83 94.0
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 1.6e-39 165.6 82 95.1
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.6e-39 165.6 82 93.9
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.6e-39 165.6 82 95.1
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.6e-39 165.6 81 96.3
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.6e-39 165.6 82 95.1
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 2.1e-39 165.2 82 92.7
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 2.7e-39 164.9 81 93.8
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 3.6e-39 164.5 82 93.9
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 3.6e-39 164.5 81 95.1
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.6e-39 164.5 81 95.1
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 3.6e-39 164.5 83 92.8
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 4.6e-39 164.1 82 92.7
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 7.9e-39 163.3 82 93.9
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 7.9e-39 163.3 80 93.8
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 7.9e-39 163.3 82 93.9
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.0e-38 162.9 82 91.5
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.0e-38 162.9 81 93.8
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 1.4e-38 162.5 81 93.8
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 1.4e-38 162.5 81 93.8
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.4e-38 162.5 82 91.5
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.4e-38 162.5 81 93.8
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 1.8e-38 162.2 82 91.5
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.8e-38 162.2 81 92.6
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.3e-38 161.8 79 94.9
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 2.3e-38 161.8 82 93.9
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 3.0e-38 161.4 83 91.6
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 3.0e-38 161.4 83 92.8
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.0e-38 161.4 87 89.7
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 3.0e-38 161.4 82 92.7
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 5.1e-38 160.6 85 89.4
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 5.1e-38 160.6 80 93.8
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 6.7e-38 160.2 82 90.2
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.1e-37 159.5 83 92.8
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 1.1e-37 159.5 82 91.5
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.5e-37 159.1 82 91.5
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.5e-37 159.1 82 89.0
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 2.0e-37 158.7 81 90.1
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 2.0e-37 158.7 82 91.5
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 2.5e-37 158.3 83 86.7
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 3.3e-37 157.9 78 91.0
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 3.3e-37 157.9 80 92.5
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 3.3e-37 157.9 82 89.0
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 4.3e-37 157.5 82 87.8
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 4.3e-37 157.5 92 84.8
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 4.3e-37 157.5 98 80.6
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 5.7e-37 157.1 80 88.8
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 5.7e-37 157.1 80 88.8
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 5.7e-37 157.1 77 92.2
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 7.4e-37 156.8 75 96.0
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 2.2e-36 155.2 74 93.2
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 3.7e-36 154.5 78 92.3
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 6.3e-36 153.7 76 93.4
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 1.8e-35 152.1 76 89.5
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.8e-35 152.1 78 88.5
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 2.4e-35 151.8 80 87.5
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 3.1e-35 151.4 74 90.5
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 3.1e-35 151.4 74 90.5
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 3.1e-35 151.4 74 90.5
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 3.1e-35 151.4 74 90.5
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 3.1e-35 151.4 75 93.3
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.1e-35 151.4 81 86.4
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.1e-35 151.4 81 86.4
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 3.1e-35 151.4 81 85.2
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 5.3e-35 150.6 85 82.4
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 1.2e-34 149.4 83 88.0
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.5e-34 149.1 77 89.6
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 2.6e-34 148.3 80 83.8
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 4.5e-34 147.5 82 81.7
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 3.6e-31 137.9 78 78.2
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 1.4e-30 136.0 70 85.7
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 5.1e-30 134.0 82 82.9
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 6.7e-30 133.7 68 85.3
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.7e-28 129.0 91 69.2
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.8e-27 125.6 69 78.3
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.4e-27 125.2 65 89.2
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.4e-27 125.2 64 89.1
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 1.2e-26 122.9 60 93.3
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.5e-24 115.9 60 85.0
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.6e-23 111.3 63 81.0
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 5.7e-21 104.0 77 62.3
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.3e-20 102.8 55 89.1
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 2.8e-20 101.7 48 97.9
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 3.2e-16 88.2 44 90.9
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 2.1e-15 85.5 60 70.0
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 6.1e-15 84.0 46 82.6
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 1.8e-14 82.4 78 55.1
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.3e-14 82.0 47 83.0
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 6.8e-14 80.5 47 83.0
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 8.8e-14 80.1 37 100.0
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 1.2e-13 79.7 39 84.6
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 1.2e-13 79.7 39 84.6
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 1.5e-13 79.3 53 73.6
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.7e-12 75.9 38 86.8
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.8e-12 75.1 67 61.2
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.7e-12 74.7 59 64.4
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.4e-11 72.0 38 92.1
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.6e-10 69.3 38 86.8
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.6e-10 69.3 51 62.7
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.5e-08 62.0 38 84.2
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 4.2e-08 61.2 29 86.2
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.4e-06 56.2 29 86.2


User provided reference genes

Program Settings