Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 0.0e+00 1606.7 798 100.0
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 0.0e+00 1143.6 880 71.2
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 1.8e-273 946.0 937 57.6
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 4.2e-254 881.7 912 55.7
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 9.1e-249 864.0 805 58.9
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 3.4e-240 835.5 909 53.8
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 4.2e-238 828.6 926 52.7
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 9.4e-238 827.4 861 54.6
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 6.1e-237 824.7 939 52.9
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 8.0e-237 824.3 948 50.6
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 5.7e-235 818.1 936 51.1
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 2.2e-234 816.2 954 49.9
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 8.2e-234 814.3 960 50.4
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 7.0e-233 811.2 963 49.6
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 1.2e-232 810.4 958 49.9
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 1.0e-231 807.4 928 51.2
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 2.9e-231 805.8 937 49.7
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 3.2e-230 802.4 928 51.1
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 5.2e-228 795.0 938 50.0
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.5e-227 793.5 938 49.8
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 2.6e-227 792.7 967 49.4
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 7.5e-227 791.2 928 50.8
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 1.1e-225 787.3 935 49.8
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 9.1e-225 784.3 928 50.4
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 1.1e-222 777.3 956 47.8
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 5.5e-222 775.0 900 50.9
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 3.0e-220 769.2 966 48.0
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 8.8e-220 767.7 950 47.9
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 1.5e-219 766.9 932 48.4
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 1.7e-218 763.5 964 47.3
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 4.8e-218 761.9 947 48.6
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 8.3e-218 761.1 953 47.0
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 1.4e-217 760.4 964 47.2
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 2.0e-216 756.5 933 48.9
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 5.9e-216 755.0 964 47.2
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 2.3e-215 753.1 953 46.1
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 8.6e-215 751.1 966 46.8
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 1.5e-214 750.4 914 49.0
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 1.9e-214 750.0 948 46.5
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 7.2e-214 748.0 935 47.0
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 1.6e-213 746.9 955 46.6
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 6.1e-213 745.0 927 47.8
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 8.0e-213 744.6 937 46.9
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 3.0e-212 742.7 905 48.8
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 4.0e-212 742.3 933 48.2
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 6.8e-212 741.5 951 46.2
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 1.2e-211 740.7 954 46.3
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 2.0e-211 740.0 959 46.4
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 3.4e-211 739.2 959 46.1
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 9.8e-211 737.6 951 45.8
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 1.3e-210 737.3 952 46.8
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 2.8e-210 736.1 961 45.4
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 1.4e-209 733.8 951 45.6
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 1.4e-209 733.8 925 49.2
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 1.9e-206 723.4 953 45.0
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 3.3e-206 722.6 932 47.1
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 5.2e-204 715.3 955 44.9
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 5.2e-204 715.3 954 45.2
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 8.9e-204 714.5 953 44.9
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 1.5e-203 713.8 954 45.1
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 4.4e-203 712.2 950 45.4
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 1.3e-202 710.7 947 45.5
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 3.2e-201 706.1 949 45.5
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 5.4e-201 705.3 951 45.7
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 2.0e-200 703.4 939 45.7
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 1.7e-199 700.3 945 45.9
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 4.7e-197 692.2 941 45.0
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 8.0e-197 691.4 903 45.3
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 5.2e-196 688.7 953 44.3
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 6.8e-196 688.3 1020 42.6
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 5.8e-195 685.3 1215 38.8
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 5.8e-195 685.3 1044 43.7
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 8.3e-194 681.4 945 44.9
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 2.4e-193 679.9 944 44.8
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.3e-190 669.5 942 44.7
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 5.6e-190 668.7 948 44.1
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 8.1e-189 664.8 843 47.8
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 1.8e-188 663.7 927 44.4
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 5.8e-187 658.7 969 43.0
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 1.3e-186 657.5 926 44.1
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 1.1e-185 654.4 970 42.9
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 4.6e-184 649.0 939 43.5
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 7.3e-182 641.7 939 43.1
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 2.8e-181 639.8 1022 41.7
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 1.7e-178 630.6 834 45.9
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 2.1e-176 623.6 980 41.2
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 1.7e-175 620.5 988 41.1
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 2.5e-174 616.7 931 44.4
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 7.6e-171 605.1 784 47.2
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 2.9e-170 603.2 829 45.5
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 9.3e-169 598.2 995 39.0
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.0e-167 594.7 992 38.9
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 5.1e-167 592.4 976 39.1
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.3e-165 587.8 822 44.3
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 1.1e-164 584.7 981 40.3
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 4.0e-164 582.8 830 43.3
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 4.5e-163 579.3 719 49.1
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 4.9e-162 575.9 820 44.0
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 1.4e-161 574.3 802 44.6
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 4.3e-158 562.8 723 48.7
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 4.0e-156 556.2 809 43.8
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 3.4e-147 526.6 611 52.4
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 2.1e-144 517.3 663 47.2
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.4e-124 450.7 443 59.1
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 3.0e-111 407.1 1069 31.7
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 5.2e-111 406.4 877 35.0
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 1.9e-105 387.9 704 39.1
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 4.7e-104 383.3 847 36.5
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 6.1e-104 382.9 542 44.6
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 1.6e-99 368.2 1099 28.9
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 3.8e-98 363.6 436 49.8
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 3.6e-96 357.1 324 61.4
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 6.1e-96 356.3 312 63.8
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 3.0e-95 354.0 544 42.6
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.4e-87 328.6 270 64.1
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 3.1e-87 327.4 580 38.6
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 4.4e-78 297.0 509 39.5
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 3.4e-62 244.2 360 42.8
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 3.4e-62 244.2 765 29.2
Potri.014G184701 Populus trichocarpa HOM05D004952 ORTHO05D006131 3.2e-60 237.7 189 65.1
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 1.4e-55 222.2 178 62.9
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 1.3e-53 215.7 263 43.7
Potri.014G184801 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.3e-48 199.1 275 46.5
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 7.4e-41 173.3 169 50.9
SEGI_10713 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 1.1e-33 149.4 160 51.9
Prupe.1G390100 Prunus persica HOM05D004952 ORTHO05D006131 3.2e-28 131.3 127 55.9
Actinidia22602 Actinidia chinensis HOM05D004952 ORTHO05D006131 1.0e-26 126.3 118 55.9
SGA_v2.0_scaffold5008G54579 Striga asiatica HOM05D004952 ORTHO05D006131 4.5e-22 110.9 90 67.8
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 1.3e-21 109.4 102 59.8
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 1.3e-21 109.4 102 59.8
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 7.2e-20 103.6 128 44.5
Ah.16g107230 Amaranthus hybridus HOM05D004952 ORTHO05D006131 3.3e-17 94.7 88 54.5
Glyma.04G036380 Glycine max HOM05D004952 ORTHO05D006131 5.7e-17 94.0 56 75.0
CBR_g19823 Chara braunii HOM05D004952 ORTHO05D000937 1.0e-13 83.2 212 31.6
Haze_25585 Corylus avellana HOM05D004952 ORTHO05D006131 1.3e-13 82.8 63 61.9
MCO11G910 Micromonas commoda HOM05D004952 ORTHO05D006131 4.2e-12 77.8 237 26.2
BcaB05g23764 Brassica carinata HOM05D004952 ORTHO05D006131 5.5e-12 77.4 60 66.7
CDE06G0077 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 1.2e-11 76.3 118 40.7
Glyma.04G036460 Glycine max HOM05D004952 ORTHO05D006131 3.6e-11 74.7 81 49.4
MBI13_g43601_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D018024 5.1e-10 70.9 56 55.4
Glyma.04G036420 Glycine max HOM05D004952 ORTHO05D006131 2.0e-09 68.9 70 47.1
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 1.8e-07 62.4 244 26.2
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 7.0e-07 60.5 208 29.8
MBI03_g03594_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 9.1e-07 60.1 50 56.0
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 1.5e-06 59.3 172 27.3
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 2.6e-06 58.5 162 27.8


User provided reference genes

Program Settings