Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.3e-263 912.5 471 100.0
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 8.8e-135 484.6 550 55.3
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.3e-117 427.6 537 51.0
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 7.8e-115 418.3 532 50.0
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.0e-111 407.9 530 50.2
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.8e-111 407.1 501 50.5
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 8.9e-111 404.8 554 47.5
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.2e-104 384.4 480 47.1
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.6e-104 384.0 543 46.6
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 6.2e-104 382.1 509 48.1
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 8.0e-104 381.7 540 45.9
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 6.8e-103 378.6 537 46.0
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 6.8e-103 378.6 560 45.2
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.5e-102 377.5 536 46.1
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 4.4e-102 375.9 466 50.4
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 5.8e-102 375.6 552 44.9
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.7e-101 374.0 558 44.4
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.7e-101 374.0 532 45.5
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.9e-101 373.2 548 46.2
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 4.9e-101 372.5 487 46.2
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.9e-101 372.5 532 45.3
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 6.4e-101 372.1 548 44.5
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 6.4e-101 372.1 545 44.6
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 8.3e-101 371.7 536 45.1
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.1e-100 371.3 552 45.7
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.4e-100 370.2 546 45.6
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 2.4e-100 370.2 563 44.0
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.2e-99 367.9 495 46.9
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 1.6e-99 367.5 565 42.8
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 3.5e-99 366.3 546 44.3
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 6.0e-99 365.5 550 43.6
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 7.8e-99 365.2 545 45.3
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.0e-98 364.8 544 45.4
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.3e-98 364.4 548 44.2
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 3.0e-98 363.2 577 43.2
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 5.1e-98 362.5 569 43.4
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 5.1e-98 362.5 549 44.1
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 6.6e-98 362.1 549 44.3
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.1e-97 361.3 577 42.6
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.9e-97 360.5 564 43.1
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.5e-97 360.1 531 43.7
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 2.5e-97 360.1 551 44.5
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.5e-97 360.1 564 43.1
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 5.6e-97 359.0 549 43.9
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.6e-97 359.0 570 42.6
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 5.6e-97 359.0 543 42.9
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 7.3e-97 358.6 544 42.8
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.2e-96 357.8 548 43.2
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.2e-96 357.8 552 42.8
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 2.1e-96 357.1 543 44.4
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.8e-96 356.7 546 42.9
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 8.1e-96 355.1 517 45.1
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.4e-95 354.4 547 43.0
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 4.0e-95 352.8 548 42.7
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 4.0e-95 352.8 545 41.8
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 4.0e-95 352.8 540 43.0
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 6.8e-95 352.1 545 43.9
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 8.9e-95 351.7 560 42.3
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.2e-94 351.3 545 43.5
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.2e-94 351.3 533 43.9
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 9.9e-94 348.2 498 47.0
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 9.9e-94 348.2 581 41.8
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 9.9e-94 348.2 544 43.8
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 1.3e-93 347.8 544 42.1
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 4.1e-92 342.8 539 43.4
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 5.4e-92 342.4 521 42.0
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 6.0e-91 339.0 513 44.4
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 6.0e-91 339.0 551 41.7
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 6.6e-90 335.5 580 40.7
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 8.6e-90 335.1 552 42.2
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.1e-89 334.7 545 41.8
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 9.5e-89 331.6 528 41.7
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 9.5e-89 331.6 544 42.8
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.6e-88 330.9 544 42.8
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 4.7e-88 329.3 545 41.3
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 8.1e-88 328.6 539 41.4
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.1e-87 328.2 545 40.6
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 2.4e-87 327.0 548 40.9
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 2.4e-87 327.0 552 40.9
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 3.1e-87 326.6 552 40.9
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 3.1e-87 326.6 548 40.9
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 6.8e-87 325.5 550 43.3
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.5e-86 324.3 552 40.6
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 1.5e-86 324.3 532 42.9
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.6e-86 323.6 561 41.2
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 3.4e-86 323.2 552 40.8
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 3.4e-86 323.2 532 42.7
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.2e-84 316.6 555 38.6
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 3.5e-83 313.2 539 40.6
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 7.8e-83 312.0 543 40.1
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 1.3e-82 311.2 544 40.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 3.0e-82 310.1 537 40.4
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 1.1e-81 308.1 569 40.2
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 1.9e-81 307.4 488 43.9
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 5.6e-81 305.8 541 41.6
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.8e-79 300.8 496 40.9
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.4e-78 296.2 514 39.9
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 2.5e-73 280.4 446 43.3
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 4.8e-72 276.2 550 37.5
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.3e-64 251.5 481 40.1
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 2.1e-64 250.8 534 34.6
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 2.0e-62 244.2 561 33.5
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 7.9e-59 232.3 153 77.1
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 2.3e-58 230.7 552 34.2
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.8e-56 223.8 565 30.6
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.9e-53 213.8 144 69.4
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.5e-52 210.7 158 71.5
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.7e-50 202.6 144 63.9
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 4.3e-49 199.9 559 30.6
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.4e-47 194.9 151 58.3
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.4e-47 194.1 184 59.2
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 1.2e-43 181.8 140 65.7
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.2e-43 181.8 477 32.1
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.6e-43 180.3 132 68.9
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 1.3e-40 171.8 200 53.0
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 1.9e-36 157.9 147 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 3.2e-36 157.1 563 27.7
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 3.6e-35 153.7 177 50.8
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 8.8e-34 149.1 147 52.4
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.4e-31 141.7 128 55.5
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.8e-31 141.4 128 54.7
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 1.8e-31 141.4 128 54.7
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 5.3e-31 139.8 128 54.7
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.1e-31 139.0 109 67.0
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 3.5e-30 137.1 122 55.7
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.2e-28 130.6 372 32.8
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 9.4e-28 129.0 83 71.1
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 4.7e-27 126.7 650 23.1
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.4e-26 125.2 99 65.7
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 3.9e-26 123.6 75 77.3
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 7.5e-17 92.8 141 34.8
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.6e-14 85.1 138 35.5
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 7.7e-14 82.8 78 60.3
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 4.2e-12 77.0 108 47.2
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.0e-10 72.4 120 40.0
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 1.3e-08 65.5 47 57.4
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 1.7e-08 65.1 108 36.1
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 3.7e-08 63.9 51 51.0
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 3.7e-08 63.9 51 51.0
Os12g0574400 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D014916 5.4e-07 60.1 119 28.6
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 7.7e-06 56.2 72 44.4


User provided reference genes

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