Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 3389.0 1766 100.0
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2417.5 1888 70.3
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2375.9 1879 70.2
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2353.6 1947 68.7
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2272.3 1932 66.3
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2262.6 1852 68.6
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2236.1 1920 65.7
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2211.8 1930 65.9
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2199.5 1944 65.1
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2196.0 1920 66.1
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2190.2 1920 65.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2185.6 1931 64.7
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2176.7 1921 64.6
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2176.4 1934 65.3
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2165.2 1931 63.0
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2163.3 1926 64.2
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2153.3 1931 63.7
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2150.6 1913 65.3
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2149.8 1940 63.1
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2149.4 1937 63.5
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2149.4 1970 63.6
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2144.8 1927 63.3
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2144.4 1913 64.5
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2143.6 1913 65.1
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2143.2 1937 62.1
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2134.0 1930 63.1
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2125.9 1924 63.5
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2125.1 1929 62.6
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2123.6 1927 63.6
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2120.1 1882 64.7
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2118.2 1937 62.6
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2117.8 1931 62.5
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2106.6 1961 62.0
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2105.5 1923 62.2
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2105.1 1934 62.4
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2092.4 1979 60.7
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2088.5 1942 62.7
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2087.8 1945 62.1
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2085.8 1963 61.9
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2082.4 1923 62.2
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2076.2 1932 61.8
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2074.7 1921 63.5
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2073.9 2147 57.5
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2071.2 1976 61.9
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2060.8 1871 64.0
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2051.6 1926 61.5
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2048.5 1932 61.6
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2043.9 1915 61.4
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2038.5 2049 59.5
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2033.5 2088 59.0
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2028.8 1770 64.4
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2026.9 1932 60.7
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2024.2 1676 68.9
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2023.4 1922 60.0
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2023.4 1882 62.5
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2020.7 1669 67.9
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2005.7 1918 60.5
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1977.6 1941 61.1
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1968.4 1926 59.8
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 1961.4 1925 59.8
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 1950.3 1911 58.8
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1933.3 1901 58.4
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1928.3 1926 59.3
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 1925.6 1898 59.3
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1923.3 1828 61.8
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1922.1 1925 59.4
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1915.2 1903 59.1
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1913.7 1928 59.3
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1908.6 2252 52.2
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1899.8 1887 59.2
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1887.5 1896 59.5
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1878.2 1888 59.2
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1877.4 1925 58.2
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1875.5 1922 58.3
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1870.1 1887 58.6
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1869.7 1948 57.9
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1869.4 1887 58.7
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1867.4 1575 67.0
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1862.8 1907 58.3
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1862.4 1929 58.0
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1854.3 1887 58.2
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1852.8 1541 68.6
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1847.8 1927 56.1
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1844.7 1931 57.7
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1842.8 1904 57.6
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1830.1 1898 57.3
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1813.5 1737 61.4
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1786.2 1421 67.6
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1772.3 1889 57.3
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1610.9 1883 51.4
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1546.9 2007 48.4
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1541.2 2037 48.6
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1460.7 1295 64.9
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1449.1 1320 64.7
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1446.4 1883 47.6
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1437.9 1867 48.3
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1423.3 1219 67.4
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1409.0 1862 49.1
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1365.1 1153 66.6
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1354.0 1244 65.2
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1293.1 1512 52.8
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1219.9 1003 65.8
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1122.5 1009 62.4
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 5.4e-294 1015.4 1378 43.4
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 1.2e-290 1004.2 1066 60.0
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.4e-286 990.7 744 71.9
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.9e-283 980.3 906 60.2
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 7.8e-277 958.4 1134 54.1
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.2e-248 864.8 634 70.3
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 8.2e-226 788.9 820 62.1
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 6.5e-215 752.7 1093 45.0
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.2e-212 743.0 913 53.5
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 8.6e-191 672.5 510 71.8
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 1.0e-180 639.0 1386 33.3
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 4.5e-123 447.6 1301 30.2
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 6.7e-111 407.1 392 59.2
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.6e-102 378.6 351 61.0
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.1e-100 371.3 366 57.7
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.5e-97 362.8 239 78.2
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.5e-97 362.1 465 49.5
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 4.4e-94 351.3 492 54.7
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.8e-93 348.6 262 71.4
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.0e-86 325.9 304 60.2
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.7e-86 324.3 385 52.2
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 4.8e-85 321.2 273 62.6
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 6.1e-72 277.7 509 44.2
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 4.6e-67 261.5 946 25.7
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 3.1e-63 248.8 226 61.9
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 8.9e-63 247.3 1125 25.6
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 7.5e-62 244.2 172 69.2
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 2.2e-61 242.7 169 69.8
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 2.0e-54 219.5 247 54.7
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 8.3e-53 214.2 170 61.2
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.1e-48 199.5 190 61.1
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 3.1e-47 195.7 380 41.3
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 2.2e-45 189.5 163 54.6
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.4e-44 186.0 223 52.0
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 1.8e-39 169.9 159 59.1
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 9.3e-36 157.5 89 80.9
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.5e-35 155.6 116 68.1
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.9e-34 152.1 197 48.2
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.4e-30 138.7 252 40.1
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 3.5e-27 129.0 179 45.3
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 1.7e-26 126.7 70 91.4
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 4.3e-25 122.1 69 88.4
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 5.6e-25 121.7 98 66.3
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 9.6e-25 120.9 87 62.1
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 9.6e-25 120.9 69 87.0
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 1.6e-24 120.2 62 93.5
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 6.2e-24 118.2 134 54.5
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 5.8e-22 111.7 85 65.9
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 2.1e-19 103.2 79 60.8
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 2.5e-17 96.3 107 53.3
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 9.6e-17 94.4 128 46.1
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.6e-16 93.6 91 60.4
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.8e-16 92.8 58 77.6
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.8e-16 92.8 58 77.6
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 2.4e-15 89.7 58 75.9
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 4.0e-15 89.0 75 60.0
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 5.3e-15 88.6 51 84.3
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.5e-14 87.0 91 47.3
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.3e-13 84.0 94 50.0
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 3.8e-13 82.4 41 92.7
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 4.9e-13 82.0 73 57.5
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 4.2e-12 79.0 36 94.4
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.3e-10 73.9 87 52.9
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.0e-10 72.8 48 72.9
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 6.7e-10 71.6 54 68.5
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 2.5e-09 69.7 58 67.2
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 2.1e-08 66.6 69 49.3
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 5.9e-06 58.5 59 52.5


User provided reference genes

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