Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 2846.2 1475 100.0
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1830.5 1536 65.0
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1799.3 1536 65.2
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1793.9 1600 64.2
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1779.2 1564 65.0
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1763.8 1557 64.5
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1735.7 1402 65.7
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1734.9 1600 60.1
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1721.1 1339 66.8
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1721.1 1339 66.8
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1714.1 1493 64.4
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1701.8 1595 59.3
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1682.2 1589 59.3
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1635.9 1313 65.0
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1634.0 1362 65.2
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1622.1 1308 64.8
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1619.4 1337 63.6
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1607.0 1329 63.7
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1606.7 1350 63.6
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1600.9 1357 62.6
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1600.1 1352 62.6
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1598.9 1095 73.0
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1593.9 1328 63.8
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1592.8 1280 66.1
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1577.0 1297 63.3
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1572.4 1521 58.3
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1572.4 1411 60.4
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1567.7 1338 62.1
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1565.8 1445 59.6
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1563.9 1308 63.5
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1561.6 1445 59.4
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1554.7 1318 62.7
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1554.3 1315 62.4
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1553.9 1445 59.3
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1550.8 1443 59.0
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1548.5 1315 63.0
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1548.1 1319 62.4
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1548.1 1333 62.2
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1546.2 1388 60.9
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1545.8 1318 61.8
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1543.1 1316 62.8
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1540.0 1315 61.8
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1531.5 1617 55.2
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1523.1 1317 62.6
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1522.7 1445 58.5
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1520.0 1355 60.9
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1519.6 1324 61.0
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1515.0 1352 60.6
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1500.3 1453 56.4
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1500.0 1321 61.5
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1491.1 1301 61.2
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1488.4 1302 61.0
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1487.2 1322 60.4
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1483.0 1316 60.0
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1481.8 1331 58.6
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1478.0 1632 52.2
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1477.6 1303 59.3
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1473.4 1316 59.6
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1469.5 1297 59.7
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1464.1 1335 58.6
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1460.3 1268 61.1
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1457.6 1614 50.2
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1450.6 1316 58.4
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1444.9 1312 58.7
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1431.0 1565 54.9
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1427.5 1316 57.7
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1409.8 1314 58.8
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1409.0 1359 54.7
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1365.5 1345 55.0
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1364.0 1369 53.5
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1363.6 1346 53.8
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1359.4 1327 54.0
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1355.9 1326 54.5
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1353.2 1290 57.8
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1351.7 1333 53.8
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1345.5 1206 59.9
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1340.5 1357 53.4
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1337.4 1330 53.5
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1337.0 1376 52.1
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1332.8 1322 53.3
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1330.5 1322 53.4
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1325.1 1336 52.8
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1318.9 1371 52.2
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1312.4 1161 60.2
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1298.1 1118 58.9
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1285.4 1258 54.1
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1256.9 929 68.4
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1234.2 1160 58.0
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1215.7 834 72.9
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1203.7 1386 48.6
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1187.6 1073 61.3
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1144.0 1169 53.1
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1085.1 833 65.4
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 1.2e-302 1043.9 929 58.7
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 3.0e-290 1002.7 830 64.9
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 4.8e-288 995.3 1143 46.7
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 5.3e-287 991.9 1098 47.5
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 7.2e-284 981.5 1135 46.8
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 2.1e-243 847.0 1091 44.8
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.6e-230 804.3 548 71.5
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 9.9e-217 758.4 799 53.8
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 2.4e-210 737.3 879 46.0
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.1e-198 697.6 620 61.8
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 6.9e-178 629.4 623 57.6
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 6.9e-178 629.4 623 57.6
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 4.5e-177 626.7 881 42.7
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 5.7e-172 609.8 464 67.0
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 5.7e-156 556.6 370 74.6
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 7.5e-156 556.2 478 57.9
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 5.0e-144 516.9 324 73.8
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 3.2e-114 417.9 470 51.7
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.7e-112 412.1 291 70.4
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 7.8e-105 386.7 394 52.0
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 2.7e-97 361.7 475 50.7
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.2e-89 336.3 476 48.1
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.0e-88 331.6 302 58.3
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.8e-85 322.4 206 72.8
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 3.8e-83 314.7 208 71.6
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 7.4e-71 273.9 173 74.0
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.1e-69 270.0 227 61.7
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 1.7e-62 246.1 1081 24.1
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 6.9e-61 240.7 786 26.3
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 6.1e-57 227.6 145 72.4
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 8.8e-56 223.8 585 36.4
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 1.3e-46 193.4 851 23.5
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 2.2e-43 182.6 232 47.4
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 1.1e-42 180.3 125 69.6
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 1.1e-42 180.3 139 64.7
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.5e-42 179.1 172 58.7
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 8.0e-41 174.1 104 77.9
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.4e-40 173.3 210 47.6
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 3.0e-40 172.2 310 41.3
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 3.1e-37 162.2 182 48.9
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 1.2e-36 160.2 153 57.5
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 4.9e-30 138.3 156 48.1
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 8.3e-30 137.5 154 53.9
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 1.3e-27 130.2 79 81.0
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 3.8e-27 128.6 76 72.4
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 4.3e-26 125.2 89 69.7
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 9.5e-26 124.0 328 32.6
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 1.8e-24 119.8 103 53.4
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 2.0e-23 116.3 75 77.3
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.3e-22 113.6 134 49.3
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 1.7e-22 113.2 76 73.7
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 3.7e-22 112.1 111 55.0
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 4.9e-22 111.7 156 44.9
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 2.4e-21 109.4 80 62.5
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 2.3e-19 102.8 123 53.7
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 2.3e-19 102.8 76 64.5
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.1e-18 100.5 64 75.0
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 1.9e-18 99.8 111 47.7
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 2.8e-17 95.9 137 50.4
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 1.4e-16 93.6 97 53.6
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 1.5e-15 90.1 68 58.8
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 5.8e-15 88.2 119 43.7
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 2.2e-14 86.3 46 78.3
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 8.3e-14 84.3 68 55.9
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 6.6e-11 74.7 87 48.3
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 2.1e-09 69.7 89 49.4
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 2.8e-09 69.3 68 54.4
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 2.8e-09 69.3 48 70.8
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 4.7e-09 68.6 36 80.6
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 3.1e-08 65.9 47 68.1
SHI18922 Sapria himalayana HOM05D004216 ORTHO05D004926 2.2e-06 59.7 35 71.4


User provided reference genes

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