Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 0.0e+00 1546.2 1290 100.0
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 6.3e-175 619.4 1382 45.9
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 5.9e-165 586.3 1322 47.9
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 7.7e-165 585.9 1324 44.2
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.2e-155 553.5 1323 47.1
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 4.4e-152 543.5 1364 48.4
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 7.0e-150 536.2 996 44.7
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 4.5e-149 533.5 1326 47.1
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 7.7e-149 532.7 1515 45.1
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 8.0e-146 522.7 1376 43.8
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 5.2e-145 520.0 1322 44.3
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 5.7e-144 516.5 1331 42.8
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 5.7e-144 516.5 1331 42.8
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.7e-143 513.8 1327 45.2
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 4.9e-143 513.5 1517 39.2
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 2.7e-141 507.7 1384 40.5
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.9e-140 504.2 1324 43.4
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 4.0e-137 493.8 1326 45.2
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 8.9e-137 492.7 1326 42.7
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 4.4e-136 490.3 1385 45.1
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.4e-134 485.3 1280 42.3
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 6.6e-132 476.5 1287 44.6
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 1.2e-130 472.2 1382 46.1
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.2e-128 465.7 1399 44.0
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 4.4e-128 463.8 1324 43.3
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 7.5e-128 463.0 1318 49.5
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 7.0e-126 456.4 1383 42.7
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 2.3e-124 451.4 1379 40.8
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 5.0e-124 450.3 720 43.9
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 3.3e-123 447.6 1307 40.2
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 9.5e-123 446.0 1531 35.9
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 1.2e-122 445.7 1326 40.5
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 8.1e-122 443.0 1319 46.1
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.4e-121 442.2 1309 40.6
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 3.4e-120 437.6 1374 42.6
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 3.7e-119 434.1 1373 41.4
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 3.2e-118 431.0 1324 41.8
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.6e-117 428.7 983 42.7
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 4.9e-111 407.1 368 73.9
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 3.0e-108 397.9 997 41.6
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 8.6e-108 396.4 990 38.1
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 8.6e-108 396.4 1560 34.8
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 1.9e-107 395.2 1358 40.8
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 3.6e-106 391.0 1384 40.7
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.8e-105 388.7 1861 36.8
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 8.9e-105 386.3 1466 37.4
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 6.6e-100 370.2 971 38.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 6.6e-100 370.2 1394 34.9
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 9.6e-99 366.3 1383 39.2
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 3.1e-97 361.3 1328 36.6
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 3.4e-96 357.8 996 39.9
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 9.9e-96 356.3 1328 41.9
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.7e-95 355.5 1376 41.4
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 1.8e-92 345.5 1404 39.4
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.5e-91 342.4 1376 41.2
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.5e-91 341.7 1384 40.2
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 9.6e-91 339.7 1387 41.6
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 9.0e-89 333.2 1387 40.6
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 3.4e-88 331.3 1379 35.2
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 2.2e-87 328.6 624 44.1
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.2e-87 328.6 1430 37.3
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.2e-87 328.6 1340 40.7
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.2e-86 324.3 1350 39.3
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 9.3e-86 323.2 1379 38.7
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 5.1e-84 317.4 996 44.8
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 1.9e-83 315.5 388 56.7
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.9e-83 315.5 983 40.2
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 4.8e-82 310.8 1301 43.7
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 5.3e-81 307.4 1331 38.9
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 9.0e-81 306.6 1385 38.9
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 1.2e-80 306.2 1336 40.8
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 3.4e-80 304.7 1392 39.7
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 2.5e-78 298.5 1368 31.9
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 1.2e-77 296.2 1383 34.9
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.6e-77 295.8 1395 37.7
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.6e-77 295.8 1395 37.7
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.3e-76 292.0 1376 37.7
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 6.7e-76 290.4 1338 38.4
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.1e-74 285.4 957 40.2
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.7e-74 284.6 1338 37.6
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.5e-72 279.3 766 43.2
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 3.8e-71 274.6 1383 35.1
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 4.2e-70 271.2 961 38.3
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 9.3e-70 270.0 1386 34.2
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.6e-69 269.2 889 38.7
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 1.6e-66 259.2 1382 37.8
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 5.9e-64 250.8 777 37.3
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.7e-63 249.2 1360 35.7
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.7e-63 249.2 1356 41.6
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 2.9e-63 248.4 1326 32.1
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 6.1e-61 240.7 1084 27.7
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 4.5e-56 224.6 1011 34.3
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 9.7e-51 206.8 1315 33.7
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 1.3e-50 206.5 636 38.7
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.4e-49 203.0 1388 36.2
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 3.1e-49 201.8 1364 28.6
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 9.1e-49 200.3 1382 37.7
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.1e-46 193.4 1318 30.7
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 2.1e-37 162.5 609 31.0
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 8.0e-37 160.6 379 36.9
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.5e-35 156.4 487 36.1
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.5e-35 156.4 231 49.8
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 9.8e-35 153.7 251 43.8
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.7e-34 151.8 216 50.0
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.4e-33 149.8 1222 37.9
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.8e-33 149.4 368 35.1
Oeu030768.1 Olea europaea HOM05D003806 ORTHO05D004346 3.5e-32 145.2 116 77.6
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 5.9e-32 144.4 1345 29.5
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.0e-31 143.7 221 45.2
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.5e-27 129.8 508 42.1
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.3e-26 126.7 221 41.6
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 7.0e-25 120.9 1212 33.7
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 7.8e-24 117.5 212 42.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.7e-23 116.3 169 52.7
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 3.8e-23 115.2 194 46.9
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 6.6e-23 114.4 179 49.7
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 6.6e-23 114.4 179 49.7
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 6.6e-23 114.4 179 49.7
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 8.6e-23 114.0 221 42.1
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 8.6e-23 114.0 171 50.3
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.5e-22 113.2 182 47.3
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.5e-22 112.5 178 50.6
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.5e-22 112.5 174 50.0
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 3.6e-21 108.6 628 28.7
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 6.1e-21 107.8 1346 27.3
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 8.9e-20 104.0 196 46.4
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 5.7e-19 101.3 427 33.5
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.8e-19 100.5 235 33.6
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.9e-18 99.0 235 33.6
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 5.4e-17 94.7 358 31.3
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 2.0e-16 92.8 922 43.7
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 4.6e-16 91.7 1317 31.7
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.1e-14 87.0 609 38.3
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 3.3e-14 85.5 1415 36.1
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 5.6e-14 84.7 676 29.0
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 7.3e-14 84.3 168 43.5
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 9.5e-14 84.0 226 32.7
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.6e-13 83.2 192 35.4
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.6e-13 83.2 192 35.4
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.3e-12 79.3 282 28.0
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.1e-12 79.0 234 30.3
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 4.0e-12 78.6 354 28.5
ATR0691G037 Amborella trichopoda HOM05D002721 ORTHO05D002919 3.4e-11 75.5 234 30.3
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 5.8e-11 74.7 1222 25.1
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 7.5e-11 74.3 141 39.7
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 7.5e-11 74.3 141 39.7
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 9.8e-11 73.9 296 28.4
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 9.8e-11 73.9 57 77.2
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 1.7e-10 73.2 87 49.4
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.7e-10 73.2 212 33.0
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 2.9e-10 72.4 148 37.8
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.7e-10 72.0 212 32.5
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 6.4e-10 71.2 206 36.4
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 6.4e-10 71.2 101 43.6
SEGI_34534 Sequoiadendron giganteum HOM05D002721 ORTHO05D002919 6.4e-10 71.2 247 32.0
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.4e-09 70.1 544 29.8
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 1.9e-09 69.7 66 59.1
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 3.2e-09 68.9 60 65.0
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 4.1e-09 68.6 59 64.4
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 7.8e-08 64.3 85 49.4
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 2.3e-07 62.8 133 36.1
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 3.0e-07 62.4 216 27.3
Cc04_g04110 Coffea canephora HOM05D003806 ORTHO05D004346 5.0e-07 61.6 57 64.9
Thhalv10012837m.g Eutrema salsugineum HOM05D002721 ORTHO05D002919 6.6e-07 61.2 265 29.8
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 2.5e-06 59.3 225 33.3
Dinv33882 Davidia involucrata HOM05D002721 ORTHO05D002919 2.5e-06 59.3 292 25.0
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 3.3e-06 58.9 77 49.4
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 4.3e-06 58.5 225 32.4
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 4.3e-06 58.5 269 27.1
Carub.0006s0983 Capsella rubella HOM05D002721 ORTHO05D002919 5.6e-06 58.2 265 28.7
Sp6g32210 Schrenkiella parvula HOM05D002721 ORTHO05D002919 9.5e-06 57.4 265 29.8


User provided reference genes

Program Settings