Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 0.0e+00 1682.9 903 100.0
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 0.0e+00 1211.1 811 83.8
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 0.0e+00 1173.7 917 69.6
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 0.0e+00 1112.1 899 69.0
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 0.0e+00 1091.6 907 67.9
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 0.0e+00 1083.2 916 65.7
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.2e-311 1073.2 938 65.5
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 4.3e-311 1071.2 902 66.2
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 9.3e-311 1070.1 912 65.4
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 2.8e-307 1058.5 931 63.5
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 5.9e-305 1050.8 899 65.9
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.9e-303 1045.8 905 64.9
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.0e-301 1038.1 908 65.3
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 2.8e-299 1031.9 905 64.6
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.1e-298 1028.5 900 64.6
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.3e-296 1023.1 924 64.1
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 1.9e-295 1019.2 899 65.1
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.3e-293 1012.3 934 61.6
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.0e-293 1011.9 915 65.0
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.3e-288 996.5 918 60.1
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 2.5e-287 992.3 730 72.6
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 3.3e-287 991.9 921 60.7
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 4.7e-286 988.0 814 67.7
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 2.6e-284 982.2 871 62.2
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 2.8e-278 962.2 925 59.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 7.0e-274 947.6 921 60.5
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 3.0e-272 942.2 927 58.1
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 6.6e-272 941.0 907 59.5
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 6.2e-270 934.5 919 58.4
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.4e-269 933.3 902 58.2
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 2.3e-269 932.6 822 62.0
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.1e-269 932.2 856 61.8
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 4.0e-269 931.8 863 60.6
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 6.8e-269 931.0 907 58.0
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 3.7e-267 925.2 911 57.4
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 4.1e-266 921.8 929 57.9
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.1e-265 919.5 911 57.4
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 3.5e-265 918.7 910 57.6
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 7.8e-265 917.5 857 61.1
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.0e-264 917.1 914 57.3
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.7e-264 916.4 918 56.5
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.9e-263 912.9 863 59.3
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 4.3e-263 911.8 928 57.2
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 2.1e-262 909.4 911 57.4
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 3.6e-262 908.7 945 56.5
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 8.1e-262 907.5 910 56.8
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 2.4e-261 906.0 927 58.7
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.5e-260 903.3 925 57.5
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.0e-260 902.9 912 56.8
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.4e-260 901.7 764 65.2
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 3.2e-258 895.6 903 58.7
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 4.2e-258 895.2 912 55.9
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 7.1e-258 894.4 918 56.3
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 7.8e-257 891.0 913 58.5
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.9e-256 888.6 913 57.5
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.6e-256 887.9 913 58.3
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 2.5e-255 885.9 850 59.6
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.1e-254 882.9 902 56.9
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 2.1e-254 882.9 883 58.4
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 4.7e-254 881.7 906 57.2
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 6.2e-254 881.3 898 56.8
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 6.2e-254 881.3 875 56.7
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 8.1e-254 880.9 879 57.3
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 6.9e-253 877.9 924 58.2
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.2e-252 877.1 912 56.1
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 2.6e-252 875.9 911 56.4
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 5.8e-252 874.8 899 58.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.8e-251 872.1 917 55.1
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.1e-250 870.5 874 55.8
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.2e-250 868.6 895 55.8
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 3.5e-249 865.5 926 55.2
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.3e-248 863.6 921 56.1
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.5e-247 860.1 923 54.7
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.3e-246 857.1 849 58.7
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 2.4e-245 852.8 909 54.6
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.9e-245 851.3 898 55.6
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 5.8e-244 848.2 896 56.1
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 9.9e-244 847.4 862 58.0
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 9.3e-242 840.9 814 59.3
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 2.3e-240 836.3 864 55.9
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 6.7e-240 834.7 857 56.4
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 1.9e-239 833.2 870 54.3
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 3.1e-237 825.9 864 55.8
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 3.4e-236 822.4 904 52.5
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 2.9e-235 819.3 904 54.4
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.9e-234 816.6 903 52.7
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 9.3e-234 814.3 867 54.6
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.8e-232 810.1 865 54.6
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.0e-232 809.3 869 54.2
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 3.0e-232 809.3 865 55.3
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 5.6e-231 805.1 919 51.7
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 6.5e-227 791.6 872 53.8
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 8.4e-227 791.2 912 50.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 4.2e-226 788.9 863 51.8
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.3e-224 783.9 891 49.9
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.1e-223 780.8 863 53.5
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.9e-223 780.0 878 53.2
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 2.8e-222 776.2 877 51.7
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-220 770.8 884 52.7
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 7.7e-220 768.1 896 52.1
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.3e-219 767.3 606 67.0
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 2.9e-219 766.1 870 53.1
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-218 762.3 868 52.6
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 6.7e-216 755.0 863 51.8
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 4.8e-206 722.2 892 50.1
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 6.5e-203 711.8 826 51.8
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.9e-202 710.3 853 49.5
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.4e-200 704.1 859 49.7
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 3.9e-200 702.6 572 68.4
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 4.8e-198 695.7 900 48.1
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 5.0e-195 685.6 763 52.7
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.4e-192 677.6 878 47.9
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.1e-189 667.9 661 57.9
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 4.1e-181 639.4 865 48.0
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 2.3e-179 633.6 873 48.1
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 4.2e-178 629.4 869 46.3
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.1e-177 627.1 650 56.6
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 7.3e-162 575.5 1073 38.9
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.2e-143 515.0 861 41.8
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.9e-142 510.4 404 67.6
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.3e-137 495.0 434 61.1
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 6.6e-131 472.6 793 43.1
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.6e-129 468.0 924 37.2
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 4.0e-128 463.4 470 59.8
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 3.5e-124 450.3 1041 35.4
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.7e-118 431.4 455 54.7
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 2.0e-111 407.9 986 33.9
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 7.1e-109 399.4 969 34.4
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.1e-104 385.6 248 79.4
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.2e-103 382.1 278 71.6
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.5e-103 381.7 343 58.3
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 6.5e-102 376.3 348 58.6
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-98 365.2 880 34.4
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 1.5e-98 365.2 880 34.4
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 8.2e-97 359.4 867 33.2
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 3.0e-91 340.9 224 77.7
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 3.5e-87 327.4 975 30.1
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.4e-75 288.9 823 31.5
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 2.9e-70 271.2 192 71.9
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 3.8e-70 270.8 401 44.1
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 2.7e-68 264.6 401 43.4
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 4.7e-68 263.8 410 44.1
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-67 262.3 363 45.2
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 4.0e-67 260.8 322 47.8
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 2.0e-66 258.5 410 43.7
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.2e-65 255.0 845 29.8
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-63 249.2 402 43.0
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 2.2e-57 228.4 364 41.2
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 6.6e-54 216.9 331 45.9
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.0e-51 209.5 345 41.7
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.0e-51 209.5 313 46.0
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 8.6e-46 189.9 172 64.5
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.6e-44 185.7 167 64.1
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 3.6e-44 184.5 1124 25.4
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 8.1e-44 183.3 148 67.6
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 8.9e-43 179.9 204 55.4
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 5.8e-42 177.2 696 29.0
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 3.2e-40 171.4 167 61.1
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 6.0e-39 167.2 131 64.1
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 7.8e-39 166.8 307 40.1
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.0e-38 166.4 251 43.8
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 1.1e-37 162.9 306 38.9
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.0e-35 154.5 225 44.0
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.4e-32 146.0 130 63.8
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 5.4e-32 144.1 304 36.5
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 9.2e-32 143.3 208 44.2
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 2.7e-31 141.7 304 36.2
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 6.0e-31 140.6 814 24.4
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.9e-29 135.6 122 63.9
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 5.4e-24 117.5 82 74.4
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 1.8e-19 102.4 260 35.4
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 3.1e-19 101.7 218 35.3
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 2.5e-13 82.0 188 33.0
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.8e-11 75.9 180 33.9
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 7.6e-10 70.5 120 41.7
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 8.4e-09 67.0 63 55.6
Cfa021652 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.7e-07 62.0 52 57.7
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 1.0e-06 60.1 52 61.5
CAN.G443.2 Capsicum annuum HOM05D000880 ORTHO05D004760 6.7e-06 57.4 163 31.3


User provided reference genes

Program Settings