Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 5.1e-168 594.3 304 100.0
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.8e-112 409.8 257 80.9
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 3.4e-111 405.6 263 78.3
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 3.0e-104 382.5 259 74.9
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 2.6e-103 379.4 257 74.7
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 2.9e-94 349.4 259 69.5
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 6.0e-92 341.7 257 69.6
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 6.6e-91 338.2 312 59.3
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.9e-90 336.7 259 68.7
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 4.3e-90 335.5 257 66.9
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 9.5e-90 334.3 259 68.3
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.2e-89 334.0 259 68.3
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 2.8e-89 332.8 256 68.0
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.1e-88 330.9 256 67.6
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.8e-88 330.1 263 63.5
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 8.9e-88 327.8 257 65.8
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 8.9e-88 327.8 262 66.8
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 2.6e-87 326.2 262 66.4
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 3.4e-87 325.9 265 63.4
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 7.5e-87 324.7 274 61.7
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 2.2e-86 323.2 276 63.0
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 5.1e-83 312.0 257 62.6
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 5.1e-83 312.0 258 61.2
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 2.1e-81 306.6 274 58.0
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 2.8e-81 306.2 257 61.9
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 3.6e-81 305.8 256 63.3
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 3.4e-79 299.3 273 57.9
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 5.8e-79 298.5 254 63.8
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 4.9e-78 295.4 255 62.0
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 8.3e-78 294.7 273 60.4
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.9e-77 293.5 264 58.0
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 5.4e-77 292.0 252 59.9
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 5.4e-77 292.0 255 58.8
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 2.1e-76 290.0 243 62.1
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.6e-76 288.9 278 58.3
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 6.0e-76 288.5 286 55.9
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 7.8e-76 288.1 255 60.8
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.7e-75 287.0 254 59.1
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 1.7e-75 287.0 253 60.5
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 3.9e-75 285.8 254 58.7
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 1.1e-74 284.3 257 56.8
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.5e-74 283.9 252 61.1
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 7.3e-74 281.6 253 59.3
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.1e-73 280.0 257 54.9
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 1.1e-72 277.7 251 58.2
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 3.1e-72 276.2 254 54.7
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 6.8e-72 275.0 253 57.7
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-71 274.2 252 56.0
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 5.8e-71 271.9 256 55.5
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 9.9e-71 271.2 254 55.9
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 2.2e-70 270.0 255 60.0
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 2.2e-70 270.0 254 57.1
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 3.8e-70 269.2 280 51.8
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 8.4e-70 268.1 256 54.3
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 7.1e-69 265.0 243 54.7
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 9.3e-69 264.6 262 53.8
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 4.6e-68 262.3 273 53.8
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 4.6e-68 262.3 296 49.3
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 7.8e-68 261.5 255 55.3
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 7.8e-68 261.5 242 59.5
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.0e-67 261.2 258 55.0
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.0e-67 261.2 259 52.9
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-67 260.8 256 54.7
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 5.1e-67 258.8 264 54.2
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.5e-66 257.3 244 55.7
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 3.3e-66 256.1 259 56.4
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.3e-65 254.2 248 54.0
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.6e-65 253.8 240 55.0
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 3.6e-65 252.7 240 55.0
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 3.6e-65 252.7 242 55.8
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 1.1e-64 251.1 243 55.1
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 9.9e-63 244.6 242 52.9
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.4e-61 240.7 307 48.9
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.4e-61 240.7 307 48.9
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 9.3e-61 238.0 242 52.5
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.1e-60 236.9 255 49.4
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 1.0e-59 234.6 237 52.7
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.3e-59 233.4 251 50.6
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 4.3e-58 229.2 251 51.0
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 4.8e-57 225.7 221 54.3
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 1.1e-56 224.6 256 47.7
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 5.8e-55 218.8 245 49.4
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 9.9e-55 218.0 258 48.8
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 9.9e-55 218.0 242 48.8
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 9.9e-55 218.0 247 49.0
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 2.9e-54 216.5 259 47.9
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 3.8e-54 216.1 231 50.6
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.4e-53 214.2 258 47.7
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 1.4e-53 214.2 247 48.6
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.9e-53 213.8 256 47.3
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 7.1e-53 211.8 198 56.1
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 1.2e-52 211.1 257 49.4
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 2.1e-52 210.3 272 46.3
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 2.7e-52 209.9 271 45.4
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 3.5e-52 209.5 256 46.1
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 3.5e-52 209.5 245 47.3
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 6.0e-52 208.8 232 53.4
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 6.0e-52 208.8 253 45.8
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 6.0e-52 208.8 253 45.8
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 6.0e-52 208.8 253 45.8
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.8e-51 207.2 164 62.8
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 5.1e-51 205.7 240 48.3
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 1.1e-50 204.5 261 44.8
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 4.3e-50 202.6 248 49.2
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 5.6e-50 202.2 269 45.7
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 7.4e-50 201.8 254 45.3
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 1.3e-49 201.1 262 46.9
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 1.6e-49 200.7 254 44.9
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.6e-49 200.7 261 44.4
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 4.8e-49 199.1 251 45.4
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 8.1e-49 198.4 180 54.4
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 1.1e-48 198.0 243 49.8
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.1e-48 196.4 261 44.4
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 5.3e-48 195.7 256 46.1
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 1.2e-47 194.5 239 45.6
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 2.0e-47 193.7 261 47.1
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 7.6e-47 191.8 262 45.8
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.6e-47 191.8 262 45.8
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 1.3e-46 191.0 185 55.7
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.3e-46 191.0 262 45.8
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.9e-46 189.9 250 47.2
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.9e-46 189.9 262 45.4
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.1e-45 188.0 262 45.0
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.1e-45 188.0 282 43.6
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 1.4e-45 187.6 266 44.7
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.2e-45 186.4 224 49.1
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.0e-43 179.9 159 57.2
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 6.7e-43 178.7 180 50.6
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 3.3e-42 176.4 239 44.4
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 4.3e-42 176.0 279 37.3
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 5.7e-42 175.6 247 39.7
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.6e-41 174.1 253 41.1
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 8.2e-41 171.8 264 40.2
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 6.9e-40 168.7 253 40.7
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 1.2e-39 167.9 277 39.7
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 1.5e-39 167.5 253 40.3
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 2.0e-39 167.2 258 39.9
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.6e-39 166.8 252 42.9
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 2.2e-38 163.7 244 40.6
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 2.2e-38 163.7 159 58.5
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.6e-36 157.5 251 40.2
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 1.3e-35 154.5 263 36.1
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 2.5e-34 150.2 264 34.5
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.4e-32 144.4 255 37.3
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 3.1e-32 143.3 243 37.9
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.5e-31 141.0 263 38.4
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 1.5e-31 141.0 202 43.1
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 2.0e-31 140.6 244 36.1
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 3.4e-31 139.8 252 36.1
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 3.4e-31 139.8 262 33.2
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.5e-31 139.4 265 32.8
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.5e-31 139.4 265 32.8
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 5.9e-31 139.0 210 42.4
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 1.0e-30 138.3 215 40.5
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 1.3e-30 137.9 257 34.2
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 1.1e-26 124.8 262 32.4
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-23 114.4 195 37.4
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 2.2e-22 110.5 183 41.0
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 8.5e-22 108.6 140 47.1
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 1.4e-21 107.8 106 51.9
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.4e-21 107.8 84 65.5
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 2.5e-21 107.1 260 31.5
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 8.8e-19 98.6 245 30.2
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.8e-17 93.6 76 61.8
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.6e-15 87.0 147 38.8
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 2.2e-14 84.0 85 51.8
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-10 71.6 69 56.5
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 1.1e-08 65.1 210 24.3
Medtr4g117730 Medicago truncatula HOM05D003539 ORTHO05D004111 1.8e-08 64.3 59 54.2
Psat0s4462g0080 Pisum sativum HOM05D003539 ORTHO05D004111 1.2e-07 61.6 76 50.0


User provided reference genes

Program Settings