Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.0e-106 389.0 188 100.0
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.1e-99 366.7 188 95.2
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.6e-98 362.1 188 91.0
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.9e-97 358.6 188 90.4
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.4e-96 356.3 188 91.0
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 2.7e-95 352.1 188 89.9
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 3.6e-95 351.7 188 89.4
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 3.6e-95 351.7 188 89.4
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 3.6e-95 351.7 188 89.4
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 4.6e-95 351.3 188 88.8
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 4.6e-95 351.3 188 88.8
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.8e-94 349.4 188 88.8
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.3e-94 349.0 188 88.8
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.9e-94 348.2 188 88.3
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 5.1e-94 347.8 188 88.3
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 5.1e-94 347.8 188 88.8
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 5.1e-94 347.8 188 88.3
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 8.8e-94 347.1 188 88.3
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.5e-93 346.3 188 87.8
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.5e-93 346.3 188 87.8
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 3.3e-93 345.1 188 87.2
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 7.4e-93 344.0 188 87.8
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 87.2
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 85.6
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 87.8
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 86.2
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 86.2
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 2.2e-92 342.4 185 86.5
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 86.2
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 86.7
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 6.3e-92 340.9 185 86.5
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 6.3e-92 340.9 185 85.4
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 6.3e-92 340.9 185 85.4
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 8.2e-92 340.5 185 86.5
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 86.7
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.4e-91 339.7 187 86.1
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 87.2
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 84.6
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 84.0
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 85.6
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 5.3e-91 337.8 185 84.9
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 86.7
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 84.0
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 84.0
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 83.5
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 83.5
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 85.1
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 85.1
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 85.1
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 85.1
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 85.1
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 83.5
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 84.0
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 85.1
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 85.1
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 85.1
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 85.1
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 85.1
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 85.1
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 85.1
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 2.6e-90 335.5 180 88.3
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 84.6
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 84.0
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 84.6
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 85.1
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 85.1
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 83.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 84.6
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 83.0
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 84.6
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.2e-89 332.4 179 88.3
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 83.0
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 85.1
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 85.1
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 84.0
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 84.0
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 85.1
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 84.0
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 84.6
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 6.5e-89 330.9 190 84.7
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 6.5e-89 330.9 190 84.7
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 83.0
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 84.0
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 84.0
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 83.0
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 83.0
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 83.0
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 83.0
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 83.0
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 82.4
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.6
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 82.4
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 82.4
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 82.4
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.2e-88 328.2 180 84.4
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 82.4
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.4
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 80.9
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 83.0
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 81.9
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 82.4
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 81.4
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 81.9
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 81.9
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 81.4
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 79.8
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 78.2
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 2.8e-84 315.5 189 81.0
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.1e-83 313.5 189 82.0
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 3.1e-83 312.0 189 81.5
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 5.3e-83 311.2 189 79.9
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 5.3e-83 311.2 189 81.5
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 7.0e-83 310.8 189 82.0
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 78.7
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.0e-81 307.0 188 80.3
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.0e-81 307.0 174 84.5
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.0e-81 307.0 188 79.3
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 77.7
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 3.8e-81 305.1 188 78.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 77.1
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.6e-79 299.7 169 82.2
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 3.0e-78 295.4 188 74.5
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 5.7e-77 291.2 190 74.7
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 5.7e-77 291.2 188 78.2
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 5.7e-77 291.2 188 72.3
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 9.7e-77 290.4 188 75.5
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.2e-76 289.3 190 74.2
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 3.7e-76 288.5 188 70.2
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 3.7e-76 288.5 188 75.0
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 7.0e-75 284.3 188 70.7
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.5e-74 282.0 188 71.8
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.5e-74 282.0 188 71.8
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 5.0e-73 278.1 188 75.0
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.5e-72 275.8 189 69.3
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 6.1e-71 271.2 179 73.7
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 6.1e-71 271.2 188 73.4
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 8.0e-71 270.8 177 75.1
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.0e-70 268.5 179 72.6
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 4.0e-70 268.5 187 67.4
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 7.5e-69 264.2 187 68.4
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 4.8e-68 261.5 187 66.3
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 5.0e-65 251.5 181 68.5
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 8.0e-63 244.2 188 60.1
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 8.8e-62 240.7 177 65.5
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.2e-61 240.4 165 75.2
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.1e-59 232.3 188 64.9
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.9e-48 196.4 187 52.4
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 2.3e-46 189.5 121 73.6
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 2.0e-45 186.4 115 77.4
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.7e-44 183.3 109 80.7
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 7.0e-43 177.9 123 74.0
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.2e-43 177.6 173 57.2
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 1.6e-42 176.8 127 68.5
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.5e-42 175.6 188 53.2
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.8e-38 163.3 85 91.8
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.2e-31 140.6 78 84.6
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 1.0e-25 120.9 91 68.1
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 4.3e-24 115.5 71 73.2
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.6e-10 70.5 35 91.4
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.1e-06 57.8 39 66.7


User provided reference genes

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