Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40250 Nelumbo nucifera HOM05D000086 ORTHO05D000983 8.8e-105 383.6 196 100.0
TAR626G0492 Trochodendron aralioides HOM05D000086 ORTHO05D000983 5.8e-64 248.1 187 72.7
Dinv43318 Davidia involucrata HOM05D000086 ORTHO05D000983 4.0e-57 225.3 193 66.8
MBI15_g34418_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D000983 2.2e-55 219.5 188 66.0
Dinv41302 Davidia involucrata HOM05D000086 ORTHO05D000983 5.1e-52 208.4 198 64.1
RcHm_v2.0_Chr4g0404881 Rosa chinensis HOM05D000086 ORTHO05D000983 2.5e-51 206.1 193 61.7
Sabra18G0085300 Salix brachista HOM05D000086 ORTHO05D000983 5.6e-51 204.9 192 60.9
Ciclev10008104m.g Citrus clementina HOM05D000086 ORTHO05D000983 2.1e-50 203.0 196 60.7
Potri.018G098500 Populus trichocarpa HOM05D000086 ORTHO05D000983 3.6e-50 202.2 192 59.9
Oeu031849.1 Olea europaea HOM05D000086 ORTHO05D000983 4.7e-50 201.8 192 60.9
TAR383G1101 Trochodendron aralioides HOM05D000086 ORTHO05D000983 8.1e-50 201.1 146 73.3
Duzib168G0865 Durio zibethinus HOM05D000086 ORTHO05D000983 1.4e-49 200.3 197 59.4
FAN22G0098 Fragaria x ananassa HOM05D000086 ORTHO05D000983 1.4e-49 200.3 193 61.1
Prupe.1G097100 Prunus persica HOM05D000086 ORTHO05D000983 1.4e-49 200.3 199 60.3
FAN07G0727 Fragaria x ananassa HOM05D000086 ORTHO05D000983 4.0e-49 198.7 193 60.6
FvH4_4g09580 Fragaria vesca HOM05D000086 ORTHO05D000983 5.3e-49 198.4 193 60.6
FAN12G2657 Fragaria x ananassa HOM05D000086 ORTHO05D000983 5.3e-49 198.4 193 60.6
FAN12G1188 Fragaria x ananassa HOM05D000086 ORTHO05D000983 6.9e-49 198.0 193 60.6
FAN26G1607 Fragaria x ananassa HOM05D000086 ORTHO05D000983 6.9e-49 198.0 193 60.6
MBI14_g08078_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D000983 9.0e-49 197.6 197 58.4
Gohir.D08G096950 Gossypium hirsutum HOM05D000086 ORTHO05D000983 2.6e-48 196.1 195 60.0
Thecc.09G161200 Theobroma cacao HOM05D000086 ORTHO05D000983 2.6e-48 196.1 201 58.2
Gohir.A08G087300 Gossypium hirsutum HOM05D000086 ORTHO05D000983 5.8e-48 194.9 195 59.5
Gorai.004G103200 Gossypium raimondii HOM05D000086 ORTHO05D000983 5.8e-48 194.9 195 60.0
Duzib187G1434 Durio zibethinus HOM05D000086 ORTHO05D000983 7.6e-48 194.5 197 58.4
MD13G1260900 Malus domestica HOM05D000086 ORTHO05D000983 9.9e-48 194.1 200 57.0
CiPaw.07G186900 Carya illinoinensis HOM05D000086 ORTHO05D000983 1.3e-47 193.7 195 59.0
QL02p095731 Quercus lobata HOM05D000086 ORTHO05D000983 1.3e-47 193.7 199 58.8
Aqoxy7G03233 Aquilegia oxysepala HOM05D000086 ORTHO05D000983 2.2e-47 193.0 210 53.8
Haze_22162 Corylus avellana HOM05D000086 ORTHO05D000983 2.2e-47 193.0 196 59.2
Oeu038131.1 Olea europaea HOM05D000086 ORTHO05D000983 6.4e-47 191.4 201 55.7
Actinidia20960 Actinidia chinensis HOM05D000086 ORTHO05D000983 8.4e-47 191.0 194 60.3
Potri.006G176700 Populus trichocarpa HOM05D000086 ORTHO05D000983 1.4e-46 190.3 193 59.1
Cpa.g.sc75.18 Carica papaya HOM05D000086 ORTHO05D000983 5.4e-46 188.3 198 58.1
Hma1.2p1_0921F.1_g236840 Hydrangea macrophylla HOM05D000086 ORTHO05D000983 5.4e-46 188.3 196 57.1
COL.COLO4_09212 Corchorus olitorius HOM05D000086 ORTHO05D000983 7.1e-46 188.0 197 58.9
MSTRG.19680 Avicennia marina HOM05D000086 ORTHO05D000983 2.1e-45 186.4 198 58.6
Cfa013544 Carpinus fangiana HOM05D000086 ORTHO05D000983 2.7e-45 186.0 199 58.3
Cc06_g13960 Coffea canephora HOM05D000086 ORTHO05D000983 2.7e-45 186.0 206 56.8
Manes.06G025000 Manihot esculenta HOM05D000086 ORTHO05D000983 6.0e-45 184.9 194 58.8
CiPaw.08G040100 Carya illinoinensis HOM05D000086 ORTHO05D000983 7.8e-45 184.5 197 55.8
Lj7P467T12 Lonicera japonica HOM05D000086 ORTHO05D000983 3.0e-44 182.6 199 57.8
DCAR_017945 Daucus carota HOM05D000086 ORTHO05D000983 3.9e-44 182.2 195 55.9
MSTRG.6180 Avicennia marina HOM05D000086 ORTHO05D000983 8.7e-44 181.0 197 55.3
Sabra06G0134900 Salix brachista HOM05D000086 ORTHO05D000983 1.9e-43 179.9 193 57.5
Lj4g0015174 Lotus japonicus HOM05D000086 ORTHO05D000983 3.3e-43 179.1 210 53.3
Oeu058829.1 Olea europaea HOM05D000086 ORTHO05D000983 3.3e-43 179.1 203 55.7
Medtr4g129420 Medicago truncatula HOM05D000086 ORTHO05D000983 5.6e-43 178.3 197 55.8
PSO782G4041 Papaver somniferum HOM05D000086 ORTHO05D000983 7.3e-43 177.9 199 57.3
VMungo1215G1534 Vigna mungo HOM05D000086 ORTHO05D000983 7.3e-43 177.9 209 55.0
CSS0017807 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D000983 2.1e-42 176.4 205 54.6
Lalb_Chr07g0180101 Lupinus albus HOM05D000086 ORTHO05D000983 2.1e-42 176.4 195 54.9
Atru.chr7.497 Acer truncatum HOM05D000086 ORTHO05D000983 2.8e-42 176.0 198 55.1
PSO063G6927 Papaver somniferum HOM05D000086 ORTHO05D000983 3.6e-42 175.6 201 56.7
Manes.14G148300 Manihot esculenta HOM05D000086 ORTHO05D000983 4.8e-42 175.3 192 55.7
Phvul.003G150800 Phaseolus vulgaris HOM05D000086 ORTHO05D000983 6.2e-42 174.9 208 54.8
arahy.Tifrunner.gnm1.ann1.11SGI5 Arachis hypogaea HOM05D000086 ORTHO05D000983 5.3e-41 171.8 202 55.9
Glyma.13G092000 Glycine max HOM05D000086 ORTHO05D000983 9.0e-41 171.0 213 53.5
Rhsim03G0262000 Rhododendron simsii HOM05D000086 ORTHO05D000983 1.5e-40 170.2 211 54.5
CANSAT11G1003 Cannabis sativa HOM05D000086 ORTHO05D000983 2.0e-40 169.9 208 53.4
TWI63G0768 Tripterygium wilfordii HOM05D000086 ORTHO05D000983 2.6e-40 169.5 196 57.7
TPR.G5329 Trifolium pratense HOM05D000086 ORTHO05D000983 1.3e-39 167.2 210 52.9
Lalb_Chr12g0199091 Lupinus albus HOM05D000086 ORTHO05D000983 2.9e-39 166.0 196 56.1
Ca_21186_v3 Cicer arietinum L. HOM05D000086 ORTHO05D000983 6.4e-39 164.9 196 53.1
Eucgr.C01247 Eucalyptus grandis HOM05D000086 ORTHO05D000983 1.4e-38 163.7 205 51.2
Glyma.17G068300 Glycine max HOM05D000086 ORTHO05D000983 1.9e-38 163.3 218 51.4
TWI34G0467 Tripterygium wilfordii HOM05D000086 ORTHO05D000983 1.6e-37 160.2 193 55.4
CDE02G0829 Ceratophyllum demersum HOM05D000086 ORTHO05D000983 3.3e-35 152.5 193 51.3
Peaxi162Scf00457g00052 Petunia axillaris HOM05D000086 ORTHO05D000983 7.4e-35 151.4 205 48.3
Gohir.A08G235300 Gossypium hirsutum HOM05D000086 ORTHO05D000983 9.6e-35 151.0 191 52.4
Gorai.004G273000 Gossypium raimondii HOM05D000086 ORTHO05D000983 1.3e-34 150.6 191 52.4
Gohir.D08G255700 Gossypium hirsutum HOM05D000086 ORTHO05D000983 3.7e-34 149.1 191 51.8
DCAR_020105 Daucus carota HOM05D000086 ORTHO05D000983 1.4e-33 147.1 197 49.2
Actinidia38651 Actinidia chinensis HOM05D000086 ORTHO05D000983 2.4e-33 146.4 192 50.5
Nitab4.5_0010802g0010 Nicotiana tabacum HOM05D000086 ORTHO05D000983 2.6e-32 142.9 208 46.6
vmacro06038 Vaccinium macrocarpon HOM05D000086 ORTHO05D000983 2.6e-32 142.9 188 47.9
Lsat_1_v5_gn_5_52300 Lactuca sativa HOM05D000086 ORTHO05D000983 3.4e-32 142.5 187 48.7
Nitab4.5_0005985g0070 Nicotiana tabacum HOM05D000086 ORTHO05D000983 4.5e-32 142.1 206 47.6
Psat4g010640 Pisum sativum HOM05D000086 ORTHO05D000983 7.6e-32 141.4 190 50.5
ClCG06G012920 Citrullus lanatus HOM05D000086 ORTHO05D000983 9.9e-32 141.0 189 51.3
ECA240G1695 Erigeron canadensis HOM05D000086 ORTHO05D000983 1.1e-30 137.5 191 48.7
CDE05G2929 Ceratophyllum demersum HOM05D000086 ORTHO05D000983 3.2e-30 136.0 193 48.2
PGR102G2274 Punica granatum HOM05D000086 ORTHO05D000983 1.6e-29 133.7 210 47.1
Eucgr.C00207 Eucalyptus grandis HOM05D000086 ORTHO05D000983 6.0e-29 131.7 186 46.8
MELO3C010166.2 Cucumis melo HOM05D000086 ORTHO05D000983 5.1e-28 128.6 182 48.9
Sopen07g002450 Solanum pennellii HOM05D000086 ORTHO05D000983 1.1e-27 127.5 194 45.4
CsaV3_1G029490 Cucumis sativus L. HOM05D000086 ORTHO05D000983 1.3e-26 124.0 182 46.7
HanXRQChr09g0244351 Helianthus annuus HOM05D000086 ORTHO05D000983 1.6e-26 123.6 191 46.1
ATR0580G125 Amborella trichopoda HOM05D000086 ORTHO05D000983 2.8e-26 122.9 229 38.9
Migut.J01421 Erythranthe guttata HOM05D000086 ORTHO05D000983 2.8e-26 122.9 196 46.4
HanXRQChr05g0136501 Helianthus annuus HOM05D000086 ORTHO05D000983 4.8e-26 122.1 192 42.2
HanXRQChr03g0066331 Helianthus annuus HOM05D000086 ORTHO05D000983 8.2e-26 121.3 191 44.0
Lsat_1_v5_gn_8_65840 Lactuca sativa HOM05D000086 ORTHO05D000983 1.1e-25 120.9 195 46.2
PGSC0003DMG400043193 Solanum tuberosum HOM05D000086 ORTHO05D000983 1.1e-25 120.9 198 42.9
Solyc07g006360.1 Solanum lycopersicum HOM05D000086 ORTHO05D000983 1.8e-25 120.2 195 45.1
vmacro13076 Vaccinium macrocarpon HOM05D000086 ORTHO05D000983 5.3e-25 118.6 184 50.0
THA.LOC104803517 Tarenaya hassleriana HOM05D000086 ORTHO05D000983 4.5e-24 115.5 206 41.3
Medtr6g012765 Medicago truncatula HOM05D000086 ORTHO05D000983 5.8e-24 115.2 145 53.1
ECA236G1765 Erigeron canadensis HOM05D000086 ORTHO05D000983 1.0e-23 114.4 203 41.9
SHI02983 Sapria himalayana HOM05D000086 ORTHO05D000983 1.0e-23 114.4 191 42.4
HPP92_017162 Vanilla planifolia HOM05D000086 ORTHO05D000983 1.7e-23 113.6 187 43.3
Actinidia33375 Actinidia chinensis HOM05D000086 ORTHO05D000983 1.9e-22 110.2 192 42.2
Sc18g0003320 Simmondsia chinensis HOM05D000086 ORTHO05D000983 1.9e-22 110.2 188 42.6
SGA_v2.0_scaffold66G22513 Striga asiatica HOM05D000086 ORTHO05D000983 2.5e-22 109.8 199 45.2
Zm00001eb177000 Zea mays HOM05D000086 ORTHO05D000983 3.2e-22 109.4 193 42.0
Ah.14g084070 Amaranthus hybridus HOM05D000086 ORTHO05D000983 4.2e-22 109.0 195 43.6
Migut.K00273 Erythranthe guttata HOM05D000086 ORTHO05D000983 1.6e-21 107.1 189 40.7
HanXRQChr06g0179421 Helianthus annuus HOM05D000086 ORTHO05D000983 1.0e-20 104.4 196 37.2
MD16G1263000 Malus domestica HOM05D000086 ORTHO05D000983 6.7e-20 101.7 155 45.8
Oeu031851.1 Olea europaea HOM05D000086 ORTHO05D000983 8.7e-20 101.3 185 41.1
GSVIVG01023776001 Vitis vinifera HOM05D000086 ORTHO05D000983 1.1e-19 100.9 186 39.2
AL7G21750 Arabidopsis lyrata HOM05D000086 ORTHO05D000983 1.5e-19 100.5 199 38.2
Os08g0445000 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000983 5.7e-19 98.6 209 40.2
Actinidia33313 Actinidia chinensis HOM05D000086 ORTHO05D000983 4.8e-18 95.5 130 46.9
Ah.09g229540 Amaranthus hybridus HOM05D000086 ORTHO05D000983 3.1e-17 92.8 196 40.8
Carub.0007s1020 Capsella rubella HOM05D000086 ORTHO05D000983 3.1e-17 92.8 198 38.9
EL10Ac8g18865 Beta vulgaris HOM05D000086 ORTHO05D000983 4.1e-17 92.4 202 41.1
AT4G30400 Arabidopsis thaliana HOM05D000086 ORTHO05D000983 5.3e-17 92.0 198 37.4
HPP92_017445 Vanilla planifolia HOM05D000086 ORTHO05D000983 2.6e-16 89.7 114 48.2
Sp7g28280 Schrenkiella parvula HOM05D000086 ORTHO05D000983 4.5e-16 89.0 199 36.7
CsaV3_2G007910 Cucumis sativus L. HOM05D000086 ORTHO05D000983 7.7e-16 88.2 190 39.5
Thhalv10025087m.g Eutrema salsugineum HOM05D000086 ORTHO05D000983 7.7e-16 88.2 198 36.4
ClCG11G012580 Citrullus lanatus HOM05D000086 ORTHO05D000983 1.0e-15 87.8 194 36.6
MELO3C004094.2 Cucumis melo HOM05D000086 ORTHO05D000983 1.3e-15 87.4 191 38.7
Sed0019328 Sechium edule HOM05D000086 ORTHO05D000983 2.2e-15 86.7 184 38.6
HPP92_017455 Vanilla planifolia HOM05D000086 ORTHO05D000983 2.9e-15 86.3 114 46.5
A03p59810 Brassica napus HOM05D000086 ORTHO05D000983 3.8e-15 85.9 198 36.9
BolC7t46245H Brassica oleracea HOM05D000086 ORTHO05D000983 3.8e-15 85.9 198 36.9
BraA03t15034Z Brassica rapa HOM05D000086 ORTHO05D000983 5.0e-15 85.5 202 34.7
Peaxi162Scf00297g00082 Petunia axillaris HOM05D000086 ORTHO05D000983 5.0e-15 85.5 150 40.7
A01p07770 Brassica napus HOM05D000086 ORTHO05D000983 1.1e-14 84.3 198 36.9
Aa31LG2G20130 Aethionema arabicum HOM05D000086 ORTHO05D000983 2.5e-14 83.2 189 37.0
C01p08660 Brassica napus HOM05D000086 ORTHO05D000983 2.5e-14 83.2 198 36.4
BraA01t00721Z Brassica rapa HOM05D000086 ORTHO05D000983 4.2e-14 82.4 198 36.4
BcaB07g31650 Brassica carinata HOM05D000086 ORTHO05D000983 9.4e-14 81.3 201 34.3
BcaC09g51829 Brassica carinata HOM05D000086 ORTHO05D000983 1.2e-13 80.9 198 35.9
BolC1t00848H Brassica oleracea HOM05D000086 ORTHO05D000983 1.2e-13 80.9 198 35.9
BcaNung02992 Brassica carinata HOM05D000086 ORTHO05D000983 1.6e-13 80.5 201 34.8
C07p57850 Brassica napus HOM05D000086 ORTHO05D000983 2.1e-13 80.1 198 35.4
BcaB03g16655 Brassica carinata HOM05D000086 ORTHO05D000983 2.7e-13 79.7 193 36.8
Zm00001eb192670 Zea mays HOM05D000086 ORTHO05D000983 4.6e-13 79.0 197 34.0
SEGI_24048 Sequoiadendron giganteum HOM05D000086 ORTHO05D000983 7.9e-13 78.2 232 33.6
CDE05G2846 Ceratophyllum demersum HOM05D000086 ORTHO05D000983 1.0e-12 77.8 155 40.0
MBI15_g26089_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D000983 1.0e-12 77.8 115 48.7
BcaC04g22890 Brassica carinata HOM05D000086 ORTHO05D000983 1.4e-12 77.4 193 35.2
C09p14160 Brassica napus HOM05D000086 ORTHO05D000983 1.4e-12 77.4 193 35.2
A09p12030 Brassica napus HOM05D000086 ORTHO05D000983 1.8e-12 77.0 193 35.2
BolC9t54313H Brassica oleracea HOM05D000086 ORTHO05D000983 1.8e-12 77.0 193 34.7
BraA09t36846Z Brassica rapa HOM05D000086 ORTHO05D000983 1.8e-12 77.0 193 35.2
Carub.0003s3291 Capsella rubella HOM05D000086 ORTHO05D000983 1.8e-12 77.0 192 37.0
CARHR238300 Cardamine hirsuta HOM05D000086 ORTHO05D000983 1.8e-12 77.0 206 33.0
THA.LOC104819986 Tarenaya hassleriana HOM05D000086 ORTHO05D000983 5.1e-12 75.5 188 36.2
Thhalv10022703m.g Eutrema salsugineum HOM05D000086 ORTHO05D000983 8.8e-12 74.7 194 33.5
Zm00001eb257520 Zea mays HOM05D000086 ORTHO05D000983 1.1e-11 74.3 193 33.7
Sed0025626 Sechium edule HOM05D000086 ORTHO05D000983 1.5e-11 73.9 194 35.1
BcaNung00545 Brassica carinata HOM05D000086 ORTHO05D000983 3.3e-11 72.8 198 33.3
Sp3g32140 Schrenkiella parvula HOM05D000086 ORTHO05D000983 7.4e-11 71.6 192 32.3
A07p01970 Brassica napus HOM05D000086 ORTHO05D000983 6.3e-10 68.6 192 33.9
BraA07t27996Z Brassica rapa HOM05D000086 ORTHO05D000983 6.3e-10 68.6 192 33.9
AT2G18650 Arabidopsis thaliana HOM05D000086 ORTHO05D000983 8.2e-10 68.2 192 31.2
DCAR_014718 Daucus carota HOM05D000086 ORTHO05D000983 1.8e-09 67.0 86 46.5
AL3G52030 Arabidopsis lyrata HOM05D000086 ORTHO05D000983 6.9e-09 65.1 192 33.3
BcaC06g36442 Brassica carinata HOM05D000086 ORTHO05D000983 1.2e-08 64.3 193 32.1
C07p04100 Brassica napus HOM05D000086 ORTHO05D000983 2.0e-08 63.5 193 34.2
BolC7t40805H Brassica oleracea HOM05D000086 ORTHO05D000983 2.0e-08 63.5 193 34.2
CARHR109240 Cardamine hirsuta HOM05D000086 ORTHO05D000983 2.0e-08 63.5 193 33.7
unitig_21.g20646 Utricularia gibba HOM05D000086 ORTHO05D000983 2.0e-08 63.5 98 48.0
Os02g0790600 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000983 2.6e-08 63.2 185 30.8
Aa31LG8G15430 Aethionema arabicum HOM05D000086 ORTHO05D000983 1.7e-07 60.5 200 31.5
Os06g0187300 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000983 1.7e-07 60.5 187 32.6


User provided reference genes

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