Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38977 Nelumbo nucifera HOM05D001100 ORTHO05D017069 2.7e-74 282.0 149 100.0
Nn2g12165 Nelumbo nucifera HOM05D001100 ORTHO05D017069 7.0e-62 240.7 137 93.4
Nn6g33905 Nelumbo nucifera HOM05D001100 ORTHO05D017069 1.1e-59 233.4 137 91.2
Nn1g03945 Nelumbo nucifera HOM05D001100 ORTHO05D001503 2.0e-56 222.6 128 92.2
Nn4g23799 Nelumbo nucifera HOM05D001100 ORTHO05D017069 3.4e-56 221.9 137 89.8
Nn3g17606 Nelumbo nucifera HOM05D001100 ORTHO05D001503 1.3e-39 166.8 93 94.6
TAR626G0779 Trochodendron aralioides HOM05D001100 ORTHO05D001503 1.0e-28 130.6 128 60.9
Nn1g06698 Nelumbo nucifera HOM05D001100 ORTHO05D001503 5.6e-27 124.8 138 57.2
Nn3g16501 Nelumbo nucifera HOM05D001100 ORTHO05D017069 8.1e-26 120.9 71 90.1
Nn7g37433 Nelumbo nucifera HOM05D001100 ORTHO05D017069 4.2e-22 108.6 68 86.8
Hma1.2p1_0144F.1_g065020 Hydrangea macrophylla HOM05D001100 ORTHO05D001503 1.3e-20 103.6 132 50.0
Nn5g28107 Nelumbo nucifera HOM05D001100 ORTHO05D017069 1.3e-20 103.6 67 82.1
Dinv39795 Davidia involucrata HOM05D001100 ORTHO05D001503 3.9e-20 102.1 131 51.1
CiPaw.09G159900 Carya illinoinensis HOM05D001100 ORTHO05D001503 1.5e-19 100.1 131 50.4
Cfa000374 Carpinus fangiana HOM05D001100 ORTHO05D001503 2.8e-18 95.9 131 49.6
Haze_06551 Corylus avellana HOM05D001100 ORTHO05D001503 6.2e-18 94.7 131 48.9
TWI38G0457 Tripterygium wilfordii HOM05D001100 ORTHO05D001503 1.8e-17 93.2 130 46.2
Aqoxy1G02660 Aquilegia oxysepala HOM05D001100 ORTHO05D001503 3.1e-17 92.4 146 47.9
Lj6g0007265 Lotus japonicus HOM05D001100 ORTHO05D001503 3.1e-17 92.4 141 46.8
TAR624G0534 Trochodendron aralioides HOM05D001100 ORTHO05D001503 3.1e-17 92.4 61 73.8
Potri.004G036400 Populus trichocarpa HOM05D001100 ORTHO05D001503 7.6e-16 87.8 137 45.3
Duzib235G1189 Durio zibethinus HOM05D001100 ORTHO05D001503 1.3e-15 87.0 132 46.2
Prupe.4G039300 Prunus persica HOM05D001100 ORTHO05D001503 1.7e-15 86.7 137 46.7
Rhsim13G0175000 Rhododendron simsii HOM05D001100 ORTHO05D001503 1.7e-15 86.7 132 49.2
vmacro22276 Vaccinium macrocarpon HOM05D001100 ORTHO05D001503 1.7e-15 86.7 136 49.3
Duzib192G0604 Durio zibethinus HOM05D001100 ORTHO05D001503 3.8e-15 85.5 129 44.2
Potri.011G044900 Populus trichocarpa HOM05D001100 ORTHO05D001503 4.9e-15 85.1 145 42.1
CANSAT56G1894 Cannabis sativa HOM05D001100 ORTHO05D001503 8.4e-15 84.3 144 44.4
Thecc.06G196000 Theobroma cacao HOM05D001100 ORTHO05D001503 8.4e-15 84.3 137 46.0
arahy.Tifrunner.gnm1.ann1.1HMN83 Arachis hypogaea HOM05D001100 ORTHO05D001503 2.4e-14 82.8 137 46.7
Ciclev10015112m.g Citrus clementina HOM05D001100 ORTHO05D001503 3.2e-14 82.4 126 43.7
Gohir.A10G022200 Gossypium hirsutum HOM05D001100 ORTHO05D001503 3.2e-14 82.4 139 46.0
Medtr2g012510 Medicago truncatula HOM05D001100 ORTHO05D001503 3.2e-14 82.4 104 52.9
Gohir.D10G023000 Gossypium hirsutum HOM05D001100 ORTHO05D001503 4.2e-14 82.0 66 66.7
Manes.16G022600 Manihot esculenta HOM05D001100 ORTHO05D001503 4.2e-14 82.0 130 45.4
Psat1g207680 Pisum sativum HOM05D001100 ORTHO05D001503 5.4e-14 81.6 79 63.3
Gorai.011G024100 Gossypium raimondii HOM05D001100 ORTHO05D001503 1.2e-13 80.5 66 65.2
RcHm_v2.0_Chr5g0006821 Rosa chinensis HOM05D001100 ORTHO05D001503 1.2e-13 80.5 133 43.6
Sabra11G0031200 Salix brachista HOM05D001100 ORTHO05D001503 1.6e-13 80.1 134 40.3
QL05p038543 Quercus lobata HOM05D001100 ORTHO05D001503 2.1e-13 79.7 62 69.4
arahy.Tifrunner.gnm1.ann1.U4QVWL Arachis hypogaea HOM05D001100 ORTHO05D001503 2.7e-13 79.3 142 43.7
TPR.G36821 Trifolium pratense HOM05D001100 ORTHO05D001503 3.5e-13 79.0 61 67.2
GSVIVG01005836001 Vitis vinifera HOM05D001100 ORTHO05D001503 4.6e-13 78.6 50 74.0
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 6.0e-13 78.2 122 46.7
Ca_00275_v3 Cicer arietinum L. HOM05D001100 ORTHO05D001503 7.9e-13 77.8 144 43.8
Glyma.13G185200 Glycine max HOM05D001100 ORTHO05D001503 1.8e-12 76.6 133 39.8
Dinv08331 Davidia involucrata HOM05D001100 ORTHO05D001503 3.0e-12 75.9 53 66.0
MD05G1323300 Malus domestica HOM05D001100 ORTHO05D001503 3.0e-12 75.9 75 61.3
COL.COLO4_31551 Corchorus olitorius HOM05D001100 ORTHO05D001503 3.9e-12 75.5 48 79.2
Glyma.13G244900 Glycine max HOM05D001100 ORTHO05D001503 5.1e-12 75.1 75 60.0
Glyma.15G068800 Glycine max HOM05D001100 ORTHO05D001503 5.1e-12 75.1 74 60.8
CAN.G1181.1 Capsicum annuum HOM05D001100 ORTHO05D001503 6.7e-12 74.7 127 44.1
AUR62014747 Chenopodium quinoa HOM05D001100 ORTHO05D001503 1.1e-11 73.9 80 56.2
MD10G1301100 Malus domestica HOM05D001100 ORTHO05D001503 1.1e-11 73.9 76 60.5
Atru.chr10.1979 Acer truncatum HOM05D001100 ORTHO05D001503 1.5e-11 73.6 65 64.6
PGR004G1129 Punica granatum HOM05D001100 ORTHO05D001503 1.5e-11 73.6 135 43.0
VMungo0540G0628 Vigna mungo HOM05D001100 ORTHO05D017069 1.5e-11 73.6 71 56.3
CiPaw.11G174700 Carya illinoinensis HOM05D001100 ORTHO05D001503 1.9e-11 73.2 50 66.0
MD11G1239100 Malus domestica HOM05D001100 ORTHO05D001503 1.9e-11 73.2 50 72.0
CSS0018393 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 2.5e-11 72.8 51 68.6
FAN21G3488 Fragaria x ananassa HOM05D001100 ORTHO05D001503 2.5e-11 72.8 143 39.2
vmacro09549 Vaccinium macrocarpon HOM05D001100 ORTHO05D001503 2.5e-11 72.8 50 70.0
AUR62016925 Chenopodium quinoa HOM05D001100 ORTHO05D001503 3.3e-11 72.4 67 64.2
FAN21G0587 Fragaria x ananassa HOM05D001100 ORTHO05D001503 3.3e-11 72.4 50 68.0
FAN16G2544 Fragaria x ananassa HOM05D001100 ORTHO05D001503 4.3e-11 72.0 50 66.0
FAN25G3062 Fragaria x ananassa HOM05D001100 ORTHO05D001503 4.3e-11 72.0 50 66.0
Phvul.006G190400 Phaseolus vulgaris HOM05D001100 ORTHO05D001503 4.3e-11 72.0 69 56.5
Prupe.4G187800 Prunus persica HOM05D001100 ORTHO05D001503 4.3e-11 72.0 50 68.0
RcHm_v2.0_Chr5g0035001 Rosa chinensis HOM05D001100 ORTHO05D001503 4.3e-11 72.0 50 66.0
CSS0015291 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 9.6e-11 70.9 50 68.0
MELO3C002563.2 Cucumis melo HOM05D001100 ORTHO05D001503 9.6e-11 70.9 128 43.8
CsaV3_3G044460 Cucumis sativus L. HOM05D001100 ORTHO05D001503 9.6e-11 70.9 50 64.0
Migut.H01495 Erythranthe guttata HOM05D001100 ORTHO05D001503 9.6e-11 70.9 137 36.5
Rhsim04G0018700 Rhododendron simsii HOM05D001100 ORTHO05D001503 9.6e-11 70.9 50 68.0
Sed0023425 Sechium edule HOM05D001100 ORTHO05D001503 9.6e-11 70.9 50 64.0
Actinidia18753 Actinidia chinensis HOM05D001100 ORTHO05D001503 1.3e-10 70.5 50 64.0
FvH4_3g20770 Fragaria vesca HOM05D001100 ORTHO05D001503 1.3e-10 70.5 50 66.0
FAN11G0341 Fragaria x ananassa HOM05D001100 ORTHO05D001503 1.3e-10 70.5 50 66.0
Ah.14g089050 Amaranthus hybridus HOM05D001100 ORTHO05D001503 1.6e-10 70.1 53 67.9
FAN11G2753 Fragaria x ananassa HOM05D001100 ORTHO05D001503 1.6e-10 70.1 132 41.7
MD03G1221700 Malus domestica HOM05D001100 ORTHO05D001503 1.6e-10 70.1 50 70.0
ClCG11G018360 Citrullus lanatus HOM05D001100 ORTHO05D001503 2.1e-10 69.7 50 64.0
MELO3C018215.2 Cucumis melo HOM05D001100 ORTHO05D001503 2.1e-10 69.7 50 62.0
Oeu053966.2 Olea europaea HOM05D001100 ORTHO05D001503 2.1e-10 69.7 62 56.5
EL10Ac8g20633 Beta vulgaris HOM05D001100 ORTHO05D001503 2.8e-10 69.3 123 42.3
CDE12G0704 Ceratophyllum demersum HOM05D001100 ORTHO05D001503 2.8e-10 69.3 130 39.2
Lalb_Chr15g0090021 Lupinus albus HOM05D001100 ORTHO05D001503 2.8e-10 69.3 144 40.3
QL08p019034 Quercus lobata HOM05D001100 ORTHO05D001503 4.8e-10 68.6 50 66.0
Cpa.g.sc27.102 Carica papaya HOM05D001100 ORTHO05D001503 6.2e-10 68.2 43 74.4
Nitab4.5_0006694g0030 Nicotiana tabacum HOM05D001100 ORTHO05D001503 8.1e-10 67.8 129 40.3
TWI39G1022 Tripterygium wilfordii HOM05D001100 ORTHO05D001503 8.1e-10 67.8 47 66.0
ClCG03G005600 Citrullus lanatus HOM05D001100 ORTHO05D001503 1.1e-09 67.4 133 40.6
Medtr4g090525 Medicago truncatula HOM05D001100 ORTHO05D001503 1.1e-09 67.4 134 39.6
Oeu031649.1 Olea europaea HOM05D001100 ORTHO05D001503 1.1e-09 67.4 49 63.3
Atru.chr2.2814 Acer truncatum HOM05D001100 ORTHO05D001503 1.4e-09 67.0 51 66.7
Cpa.g.sc2554.1 Carica papaya HOM05D001100 ORTHO05D001503 1.4e-09 67.0 46 69.6
FAN25G1363 Fragaria x ananassa HOM05D001100 ORTHO05D001503 1.4e-09 67.0 132 39.4
Lj4g0024750 Lotus japonicus HOM05D001100 ORTHO05D001503 1.4e-09 67.0 61 57.4
Psat7g111200 Pisum sativum HOM05D001100 ORTHO05D001503 1.4e-09 67.0 134 39.6
DCAR_017157 Daucus carota HOM05D001100 ORTHO05D001503 1.8e-09 66.6 50 66.0
Manes.03G115100 Manihot esculenta HOM05D001100 ORTHO05D001503 1.8e-09 66.6 47 68.1
FAN16G1788 Fragaria x ananassa HOM05D001100 ORTHO05D001503 2.4e-09 66.2 61 59.0
Cc02_g12650 Coffea canephora HOM05D001100 ORTHO05D001503 3.1e-09 65.9 144 38.2
Duzib213G0651 Durio zibethinus HOM05D001100 ORTHO05D001503 4.0e-09 65.5 50 60.0
Eucgr.G00577 Eucalyptus grandis HOM05D001100 ORTHO05D001503 4.0e-09 65.5 145 40.7
Nitab4.5_0003114g0090 Nicotiana tabacum HOM05D001100 ORTHO05D001503 4.0e-09 65.5 126 39.7
Ciclev10008644m.g Citrus clementina HOM05D001100 ORTHO05D001503 5.3e-09 65.1 51 64.7
Glyma.07G191500 Glycine max HOM05D001100 ORTHO05D001503 5.3e-09 65.1 133 37.6
COL.COLO4_09462 Corchorus olitorius HOM05D001100 ORTHO05D001503 6.9e-09 64.7 50 60.0
Gohir.A01G067300 Gossypium hirsutum HOM05D001100 ORTHO05D001503 6.9e-09 64.7 53 54.7
Gohir.D01G054500 Gossypium hirsutum HOM05D001100 ORTHO05D001503 6.9e-09 64.7 53 54.7
Gorai.002G074400 Gossypium raimondii HOM05D001100 ORTHO05D001503 6.9e-09 64.7 53 54.7
TWI38G0548 Tripterygium wilfordii HOM05D001100 ORTHO05D001503 6.9e-09 64.7 47 61.7
HPP92_013157 Vanilla planifolia HOM05D001100 ORTHO05D001503 6.9e-09 64.7 105 45.7
MSTRG.14695 Avicennia marina HOM05D001100 ORTHO05D001503 9.0e-09 64.3 131 37.4
Lj4g0003458 Lotus japonicus HOM05D001100 ORTHO05D001503 9.0e-09 64.3 87 49.4
Thecc.07G074400 Theobroma cacao HOM05D001100 ORTHO05D001503 9.0e-09 64.3 50 60.0
GSVIVG01014412001 Vitis vinifera HOM05D001100 ORTHO05D001503 9.0e-09 64.3 46 67.4
Ah.04g165010 Amaranthus hybridus HOM05D001100 ORTHO05D001503 1.2e-08 63.9 46 71.7
TPR.G32404 Trifolium pratense HOM05D001100 ORTHO05D001503 1.2e-08 63.9 115 36.5
Eucgr.F03343 Eucalyptus grandis HOM05D001100 ORTHO05D001503 2.0e-08 63.2 50 60.0
Potri.011G124700 Populus trichocarpa HOM05D001100 ORTHO05D001503 2.0e-08 63.2 47 70.2
SalBow8G0378 Salvia bowleyana HOM05D001100 ORTHO05D001503 2.0e-08 63.2 50 62.0
Lalb_Chr05g0218251 Lupinus albus HOM05D001100 ORTHO05D001503 2.6e-08 62.8 91 44.0
Phvul.011G148400 Phaseolus vulgaris HOM05D001100 ORTHO05D001503 2.6e-08 62.8 50 58.0
arahy.Tifrunner.gnm1.ann1.IT4TLX Arachis hypogaea HOM05D001100 ORTHO05D001503 3.4e-08 62.4 50 58.0
arahy.Tifrunner.gnm1.ann1.NC667I Arachis hypogaea HOM05D001100 ORTHO05D001503 3.4e-08 62.4 50 58.0
Lsat_1_v5_gn_4_56081 Lactuca sativa HOM05D001100 ORTHO05D001503 3.4e-08 62.4 138 32.6
Lj1A851G60 Lonicera japonica HOM05D001100 ORTHO05D001503 4.5e-08 62.0 48 66.7
Lj3g0001024 Lotus japonicus HOM05D001100 ORTHO05D001503 4.5e-08 62.0 50 58.0
VMungo1127G0935 Vigna mungo HOM05D001100 ORTHO05D001503 4.5e-08 62.0 50 58.0
Cc05_g12560 Coffea canephora HOM05D001100 ORTHO05D001503 7.6e-08 61.2 51 60.8
Solyc12g013560.2 Solanum lycopersicum HOM05D001100 ORTHO05D001503 7.6e-08 61.2 53 58.5
Sopen12g006920 Solanum pennellii HOM05D001100 ORTHO05D001503 7.6e-08 61.2 53 58.5
PGSC0003DMG400022370 Solanum tuberosum HOM05D001100 ORTHO05D001503 7.6e-08 61.2 61 52.5
SGA_v2.0_scaffold73G24306 Striga asiatica HOM05D001100 ORTHO05D001503 7.6e-08 61.2 46 65.2
AUR62015617 Chenopodium quinoa HOM05D001100 ORTHO05D001503 9.9e-08 60.8 46 65.2
AUR62029328 Chenopodium quinoa HOM05D001100 ORTHO05D001503 9.9e-08 60.8 46 65.2
AUR62029340 Chenopodium quinoa HOM05D001100 ORTHO05D001503 9.9e-08 60.8 46 65.2
Phvul.002G223600 Phaseolus vulgaris HOM05D001100 ORTHO05D001503 9.9e-08 60.8 131 38.9
Sabra11G0109400 Salix brachista HOM05D001100 ORTHO05D001503 9.9e-08 60.8 47 68.1
Solyc04g016570.1 Solanum lycopersicum HOM05D001100 ORTHO05D017069 9.9e-08 60.8 66 50.0
Glyma.06G249500 Glycine max HOM05D001100 ORTHO05D001503 1.3e-07 60.5 50 56.0
Glyma.12G148400 Glycine max HOM05D001100 ORTHO05D001503 1.3e-07 60.5 53 52.8
HanXRQChr15g0494501 Helianthus annuus HOM05D001100 ORTHO05D001503 1.3e-07 60.5 55 54.5
SalBow1G4616 Salvia bowleyana HOM05D001100 ORTHO05D001503 1.3e-07 60.5 52 59.6
SalBow7G2402 Salvia bowleyana HOM05D001100 ORTHO05D001503 1.3e-07 60.5 52 59.6
VMungo0251G1464 Vigna mungo HOM05D001100 ORTHO05D001503 2.2e-07 59.7 67 55.2
MSTRG.6848 Avicennia marina HOM05D001100 ORTHO05D001503 2.9e-07 59.3 50 60.0
Nitab4.5_0000662g0040 Nicotiana tabacum HOM05D001100 ORTHO05D001503 3.8e-07 58.9 49 63.3
Nitab4.5_0001610g0010 Nicotiana tabacum HOM05D001100 ORTHO05D001503 3.8e-07 58.9 49 63.3
Solyc02g078860.3 Solanum lycopersicum HOM05D001100 ORTHO05D001503 3.8e-07 58.9 112 39.3
Lj2A282T44 Lonicera japonica HOM05D001100 ORTHO05D001503 4.9e-07 58.5 52 53.8
Lalb_Chr19g0134381 Lupinus albus HOM05D001100 ORTHO05D001503 4.9e-07 58.5 46 60.9
ECA234G2407 Erigeron canadensis HOM05D001100 ORTHO05D001503 8.4e-07 57.8 49 57.1
Sopen02g023680 Solanum pennellii HOM05D001100 ORTHO05D001503 8.4e-07 57.8 101 39.6
EL10Ac4g08088 Beta vulgaris HOM05D001100 ORTHO05D001503 1.1e-06 57.4 48 62.5
Ca_23097_v3 Cicer arietinum L. HOM05D001100 ORTHO05D001503 1.1e-06 57.4 50 58.0
Lalb_Chr01g0006451 Lupinus albus HOM05D001100 ORTHO05D017069 1.1e-06 57.4 53 50.9
Lsat_1_v5_gn_7_106201 Lactuca sativa HOM05D001100 ORTHO05D001503 1.4e-06 57.0 48 56.2
Psat4g173160 Pisum sativum HOM05D001100 ORTHO05D001503 1.4e-06 57.0 50 58.0
Sed0002135 Sechium edule HOM05D001100 ORTHO05D001503 1.4e-06 57.0 127 34.6
Medtr8g464260 Medicago truncatula HOM05D001100 ORTHO05D001503 1.9e-06 56.6 50 58.0
PGSC0003DMG400008568 Solanum tuberosum HOM05D001100 ORTHO05D001503 1.9e-06 56.6 52 53.8
Dinv40511 Davidia involucrata HOM05D001100 ORTHO05D001503 2.4e-06 56.2 33 75.8
SGA_v2.0_scaffold159G37645 Striga asiatica HOM05D001100 ORTHO05D001503 2.4e-06 56.2 47 57.4
ATR0693G320 Amborella trichopoda HOM05D001100 ORTHO05D001503 3.2e-06 55.8 47 57.4
CAN.G433.19 Capsicum annuum HOM05D001100 ORTHO05D001503 5.5e-06 55.1 52 51.9
PGR031G3797 Punica granatum HOM05D001100 ORTHO05D001503 5.5e-06 55.1 49 59.2
TPR.G29366 Trifolium pratense HOM05D001100 ORTHO05D001503 5.5e-06 55.1 53 52.8


User provided reference genes

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