Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.7e-170 602.1 330 100.0
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.7e-170 602.1 330 100.0
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 8.4e-108 394.4 328 65.5
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 1.8e-94 350.1 327 60.6
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 4.0e-94 349.0 332 59.9
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 3.4e-93 345.9 336 64.6
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 1.7e-92 343.6 329 58.1
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 1.7e-92 343.6 326 59.5
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 6.5e-92 341.7 326 57.4
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.5e-91 339.7 328 59.1
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 2.5e-91 339.7 326 57.1
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 9.3e-91 337.8 328 58.8
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 2.7e-90 336.3 328 55.8
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 2.7e-90 336.3 329 57.8
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.8e-89 333.6 330 57.3
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 1.8e-89 333.6 329 58.4
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.1e-88 330.9 327 57.5
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 2.2e-87 326.6 333 57.7
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 6.3e-87 325.1 331 59.8
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 1.8e-86 323.6 331 57.1
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 2.6e-85 319.7 328 55.8
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 3.4e-85 319.3 323 57.9
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 7.7e-85 318.2 328 55.8
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 1.0e-84 317.8 327 61.2
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 3.8e-84 315.8 333 55.9
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 5.0e-84 315.5 326 57.4
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 1.6e-82 310.5 324 56.8
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 2.1e-82 310.1 327 56.3
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 3.6e-82 309.3 329 55.0
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 3.6e-82 309.3 327 56.3
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 3.9e-81 305.8 329 54.4
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 3.9e-81 305.8 329 53.2
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 8.8e-81 304.7 324 53.1
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 1.1e-80 304.3 326 51.8
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 2.5e-80 303.1 329 54.7
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 2.5e-80 303.1 331 55.3
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 5.7e-80 302.0 331 54.7
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 7.4e-80 301.6 329 54.7
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 9.7e-80 301.2 327 53.8
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 3.7e-79 299.3 327 54.7
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 4.8e-79 298.9 326 54.6
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 6.3e-79 298.5 329 53.2
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 8.2e-79 298.1 373 52.5
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 1.4e-78 297.4 325 52.9
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 1.4e-78 297.4 334 52.1
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 2.4e-78 296.6 330 53.0
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 3.1e-78 296.2 331 52.9
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 5.3e-78 295.4 325 53.8
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 6.9e-78 295.0 332 52.7
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 2.6e-77 293.1 324 52.2
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 4.5e-77 292.4 331 53.2
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 4.5e-77 292.4 326 53.7
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 5.9e-77 292.0 326 54.6
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 7.7e-77 291.6 327 52.3
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 2.9e-76 289.7 338 52.4
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.1e-75 287.7 336 53.0
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.9e-75 287.0 327 53.2
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 3.2e-75 286.2 327 51.1
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 3.2e-75 286.2 325 53.8
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.2e-75 286.2 325 53.8
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 3.2e-75 286.2 328 51.2
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 4.2e-75 285.8 335 53.1
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 4.2e-75 285.8 325 53.8
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 1.2e-74 284.3 324 51.2
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 4.7e-74 282.3 327 48.9
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 6.1e-74 282.0 326 54.9
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.8e-73 280.4 337 51.9
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.8e-73 280.4 337 51.9
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 1.8e-73 280.4 331 49.5
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 8.8e-73 278.1 328 55.2
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 5.7e-72 275.4 324 49.4
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 1.3e-71 274.2 327 49.8
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 2.8e-71 273.1 324 50.6
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 4.8e-71 272.3 331 55.9
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 1.8e-70 270.4 324 50.9
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 3.1e-70 269.6 325 51.4
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 1.2e-69 267.7 324 50.3
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 2.6e-69 266.5 324 50.0
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 3.5e-69 266.2 336 48.8
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 4.5e-69 265.8 325 50.8
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 2.9e-68 263.1 331 49.2
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 1.9e-67 260.4 331 48.0
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 5.5e-67 258.8 326 50.3
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 2.3e-65 253.4 332 47.3
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 6.7e-65 251.9 332 47.0
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 1.5e-64 250.8 324 46.0
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 2.6e-64 250.0 329 45.6
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 2.2e-63 246.9 324 48.5
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 2.2e-63 246.9 325 46.5
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 2.8e-63 246.5 325 49.2
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.8e-63 246.5 332 50.0
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 3.7e-63 246.1 325 49.2
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 3.7e-63 246.1 325 49.2
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 4.8e-63 245.7 324 46.9
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 8.2e-63 245.0 274 53.3
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 8.2e-63 245.0 286 52.1
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 3.1e-62 243.0 407 43.5
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 4.1e-62 242.7 325 48.9
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 9.1e-62 241.5 324 48.1
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 6.5e-60 235.3 325 44.6
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 9.4e-59 231.5 333 48.9
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 1.0e-57 228.0 170 66.5
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 2.7e-53 213.4 327 41.0
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 7.8e-37 158.7 325 35.4
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 1.7e-36 157.5 264 43.6
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 4.3e-35 152.9 135 54.8
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 1.5e-32 144.4 269 38.7
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 2.6e-32 143.7 331 31.1
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 3.4e-32 143.3 300 39.7
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 4.4e-32 142.9 195 42.6
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 1.5e-27 127.9 358 29.9
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 3.3e-27 126.7 200 39.0
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 5.6e-27 125.9 340 31.5
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 8.9e-25 118.6 337 29.7
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 1.2e-24 118.2 111 57.7
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 4.9e-23 112.8 247 40.1
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 4.1e-22 109.8 137 43.1
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.1e-21 107.5 247 39.3
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 6.6e-20 102.4 156 40.4
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 9.5e-19 98.6 128 39.8
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 1.2e-16 91.7 145 37.9
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 2.8e-10 70.5 57 54.4
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 2.8e-10 70.5 57 54.4
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 5.8e-08 62.8 67 47.8
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 7.6e-08 62.4 117 39.3


User provided reference genes

Program Settings