Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 3.2e-134 481.9 263 100.0
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 1.1e-91 340.5 265 72.5
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 4.4e-83 312.0 208 78.8
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 8.2e-82 307.8 266 64.7
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 3.1e-81 305.8 265 65.3
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 3.1e-81 305.8 269 66.5
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.2e-80 303.9 216 73.6
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 7.7e-80 301.2 272 65.4
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 8.5e-79 297.7 221 69.2
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 4.2e-78 295.4 282 63.1
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 1.2e-77 293.9 267 63.3
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 2.7e-77 292.7 216 72.7
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 4.7e-77 292.0 265 64.2
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 6.1e-77 291.6 267 64.8
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 8.0e-77 291.2 266 64.3
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 8.0e-77 291.2 269 65.1
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 3.0e-76 289.3 231 69.3
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 5.2e-76 288.5 229 66.4
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 6.8e-76 288.1 272 60.3
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 6.8e-76 288.1 278 64.0
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.2e-75 287.3 309 59.9
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 2.6e-75 286.2 273 61.5
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 1.3e-74 283.9 275 58.9
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.7e-74 283.5 257 61.9
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 1.1e-73 280.8 177 82.5
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 1.8e-73 280.0 215 68.4
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 3.1e-73 279.3 274 59.9
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 3.1e-73 279.3 271 58.7
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 4.1e-73 278.9 176 82.4
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 5.4e-73 278.5 271 58.3
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 5.4e-73 278.5 263 60.5
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 5.4e-73 278.5 267 65.5
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 1.2e-72 277.3 275 60.7
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.6e-72 276.9 274 59.5
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 2.7e-72 276.2 271 61.3
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 5.9e-72 275.0 275 57.8
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.7e-71 273.5 270 61.9
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.3e-71 273.1 270 60.4
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 5.0e-71 271.9 177 79.1
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 6.5e-71 271.6 206 68.0
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.5e-70 270.4 227 67.0
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 2.5e-70 269.6 266 60.9
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 4.2e-70 268.9 269 57.2
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 5.5e-70 268.5 273 56.4
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 7.2e-70 268.1 289 57.1
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 8.0e-69 264.6 270 60.4
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 2.3e-68 263.1 206 67.5
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 3.4e-67 259.2 181 74.6
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 4.4e-67 258.8 180 72.8
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 5.7e-67 258.5 267 57.7
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 5.7e-67 258.5 180 72.8
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 7.5e-67 258.1 254 60.6
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.3e-66 257.3 276 55.1
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.4e-65 253.8 321 52.6
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 1.8e-65 253.4 266 57.1
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 2.4e-65 253.1 179 74.9
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 2.7e-64 249.6 178 73.0
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.7e-64 249.6 179 73.7
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 3.5e-64 249.2 178 70.8
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 8.6e-63 244.6 178 70.8
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 1.5e-62 243.8 178 70.8
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 2.5e-62 243.0 178 70.2
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 5.6e-62 241.9 179 68.7
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 5.6e-62 241.9 169 71.6
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 7.3e-62 241.5 179 68.2
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 7.3e-62 241.5 179 68.2
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 7.3e-62 241.5 179 68.2
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 9.5e-62 241.1 179 68.2
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 9.5e-62 241.1 169 71.0
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 9.5e-62 241.1 179 68.2
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 9.5e-62 241.1 251 59.8
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.2e-61 240.7 169 71.0
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.6e-61 240.4 179 69.3
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.8e-60 236.9 163 70.6
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 4.0e-60 235.7 211 61.1
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 4.0e-60 235.7 169 72.8
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 4.4e-59 232.3 155 74.8
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 2.2e-58 229.9 199 61.8
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 3.7e-58 229.2 248 56.5
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 1.8e-57 226.9 164 68.3
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 9.2e-57 224.6 146 76.7
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.7e-56 223.0 232 59.5
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 7.8e-56 221.5 212 62.3
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 1.3e-55 220.7 241 56.8
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 5.0e-55 218.8 147 77.6
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 3.3e-54 216.1 268 50.7
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 1.6e-53 213.8 147 76.2
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 4.7e-53 212.2 212 58.5
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.2e-51 207.6 154 68.8
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.7e-50 203.8 235 51.9
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.9e-47 192.6 167 61.1
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 5.6e-46 188.7 179 59.2
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 1.1e-44 184.5 200 55.5
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.8e-44 183.7 212 52.4
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 3.2e-41 172.9 183 53.0
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 9.2e-41 171.4 201 51.7
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.3e-39 167.5 121 69.4
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 6.6e-39 165.2 122 68.9
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 8.4e-34 148.3 164 53.0
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 2.4e-33 146.7 103 70.9
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 3.2e-33 146.4 126 61.1
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.3e-30 136.3 85 82.4
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 1.6e-29 134.0 125 59.2
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 3.1e-28 129.8 86 74.4
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 5.8e-27 125.6 144 52.1
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 2.9e-26 123.2 117 56.4
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.2e-24 117.9 85 68.2
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 2.1e-24 117.1 144 50.7
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.0e-23 114.8 75 74.7
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.3e-23 114.4 105 62.9
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 3.0e-23 113.2 159 52.2
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 8.7e-23 111.7 189 44.4
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.6e-21 106.3 150 46.7
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 1.8e-20 104.0 184 39.7
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 5.3e-20 102.4 126 46.8
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 3.5e-16 89.7 71 70.4
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 1.0e-15 88.2 65 73.8
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 5.1e-15 85.9 65 60.0
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 3.1e-12 76.6 103 42.7
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 7.6e-11 72.0 55 60.0
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 2.2e-10 70.5 85 42.4
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.9e-09 67.4 47 63.8
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.4e-09 67.0 43 72.1


User provided reference genes

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