Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.4e-131 472.2 249 100.0
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 5.4e-59 231.9 184 74.5
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 4.0e-54 215.7 204 62.7
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 2.6e-53 213.0 207 64.7
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 8.4e-52 208.0 198 65.7
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.6e-50 203.8 195 61.5
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 6.0e-50 201.8 163 70.6
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.0e-49 201.1 163 69.9
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.3e-49 200.7 206 60.7
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 3.9e-49 199.1 212 60.4
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.9e-49 199.1 162 71.0
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.9e-49 199.1 206 58.3
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 1.1e-48 197.6 211 59.7
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 9.6e-48 194.5 165 70.3
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.8e-47 193.0 206 59.7
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 3.7e-47 192.6 165 67.3
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.1e-46 191.0 200 61.0
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 1.8e-46 190.3 165 66.1
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.0e-46 189.1 164 65.9
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 4.0e-46 189.1 165 58.2
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.5e-45 187.2 163 68.7
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.0e-45 186.8 167 66.5
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 2.0e-45 186.8 165 62.4
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.0e-45 186.8 165 67.3
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.6e-45 186.4 163 68.7
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 4.5e-45 185.7 163 68.1
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 5.8e-45 185.3 160 63.8
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.0e-44 184.5 204 57.8
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.3e-44 184.1 165 66.1
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.7e-44 183.7 168 65.5
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 2.2e-44 183.3 170 61.2
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 2.9e-44 183.0 206 58.3
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.9e-44 183.0 168 64.9
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 3.8e-44 182.6 206 57.3
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.4e-43 180.6 207 51.2
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.9e-43 180.3 166 65.1
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.9e-43 180.3 160 63.1
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 3.2e-43 179.5 206 56.8
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 4.2e-43 179.1 165 64.8
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 7.1e-43 178.3 162 62.3
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 9.3e-43 177.9 165 57.6
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 9.3e-43 177.9 150 70.0
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.2e-42 177.6 160 61.9
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-42 177.6 211 52.6
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.6e-42 177.2 160 63.1
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 2.1e-42 176.8 202 56.4
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 2.1e-42 176.8 203 58.1
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.7e-42 176.4 163 65.0
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 2.7e-42 176.4 208 53.8
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 3.5e-42 176.0 212 54.2
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 4.6e-42 175.6 162 61.7
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 4.6e-42 175.6 210 57.1
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 6.0e-42 175.3 216 54.6
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.3e-41 173.3 163 62.0
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.1e-40 171.0 147 72.1
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.5e-40 170.6 223 53.4
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 2.5e-40 169.9 168 60.7
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 2.5e-40 169.9 168 60.7
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 3.3e-40 169.5 205 53.7
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 3.3e-40 169.5 161 61.5
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 9.7e-40 167.9 163 63.8
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 1.3e-39 167.5 211 51.7
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.6e-39 167.2 112 78.6
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.6e-39 167.2 163 61.3
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 6.3e-39 165.2 149 64.4
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 8.2e-39 164.9 155 61.9
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.1e-38 164.5 150 64.0
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.4e-38 164.1 162 63.6
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.4e-38 164.1 163 60.7
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 2.4e-38 163.3 149 63.8
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.6e-37 159.8 162 60.5
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 3.4e-37 159.5 123 74.0
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 4.5e-37 159.1 222 51.8
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 4.5e-37 159.1 179 54.2
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.0e-36 157.9 142 66.2
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.0e-36 157.9 150 64.0
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 1.0e-36 157.9 219 51.6
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 1.3e-36 157.5 166 59.6
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.7e-36 157.1 206 53.4
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.4e-35 154.1 161 59.0
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.2e-35 152.5 224 49.6
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 2.7e-34 149.8 237 46.8
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.5e-29 134.0 99 69.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 2.0e-29 133.7 160 55.0
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 6.1e-26 122.1 94 64.9
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 1.0e-25 121.3 101 65.3
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 3.9e-25 119.4 239 40.2
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.5e-24 117.5 74 77.0
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 2.6e-24 116.7 73 79.5
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 2.6e-24 116.7 74 78.4
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 7.4e-24 115.2 113 69.9
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 9.7e-24 114.8 171 52.0
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.4e-22 110.9 162 51.9
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 1.5e-21 107.5 146 50.0
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.6e-21 106.7 131 53.4
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.6e-21 106.7 211 36.0
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 5.9e-21 105.5 112 55.4
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 7.7e-21 105.1 109 53.2
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 7.7e-21 105.1 91 59.3
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 7.7e-21 105.1 89 61.8
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.9e-20 103.2 189 43.9
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 2.9e-20 103.2 89 59.6
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 3.8e-20 102.8 89 56.2
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.8e-20 102.8 103 55.3
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.0e-20 102.4 111 50.5
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 6.5e-20 102.1 61 82.0
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.9e-19 100.5 89 57.3
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.9e-19 100.5 128 45.3
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 1.9e-19 100.5 132 46.2
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 2.5e-19 100.1 145 42.8
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 2.5e-19 100.1 110 46.4
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 3.2e-19 99.8 91 56.0
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 4.2e-19 99.4 143 42.0
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 4.2e-19 99.4 86 66.3
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 5.5e-19 99.0 109 51.4
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 7.2e-19 98.6 91 54.9
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 7.2e-19 98.6 91 54.9
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 9.4e-19 98.2 92 52.2
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 9.4e-19 98.2 112 45.5
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 9.4e-19 98.2 109 50.5
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 1.2e-18 97.8 105 54.3
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.2e-18 97.8 109 49.5
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 2.1e-18 97.1 87 56.3
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 2.1e-18 97.1 129 43.4
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 8.0e-18 95.1 111 46.8
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.0e-17 94.7 89 56.2
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.0e-17 94.7 172 39.0
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.4e-17 94.4 91 50.5
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.4e-17 94.4 130 46.2
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 3.0e-17 93.2 88 58.0
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 3.0e-17 93.2 88 58.0
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.0e-17 93.2 137 44.5
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 5.2e-17 92.4 89 56.2
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 8.8e-17 91.7 91 51.6
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 8.8e-17 91.7 138 46.4
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 8.8e-17 91.7 109 51.4
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 1.5e-16 90.9 128 42.2
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.5e-16 90.9 157 45.2
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 2.0e-16 90.5 147 39.5
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 2.0e-16 90.5 147 39.5
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 3.3e-16 89.7 91 50.5
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 4.4e-16 89.4 191 40.8
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 4.4e-16 89.4 92 46.7
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 4.4e-16 89.4 142 51.4
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 7.4e-16 88.6 99 53.5
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 9.7e-16 88.2 91 54.9
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.3e-15 87.8 91 47.3
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 2.2e-15 87.0 109 45.0
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 2.8e-15 86.7 105 47.6
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 2.8e-15 86.7 99 48.5
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.7e-15 86.3 91 46.2
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 1.1e-14 84.7 81 70.4
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 5.3e-14 82.4 112 42.9
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.6e-13 80.9 124 41.1
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 5.5e-11 72.4 130 43.1
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 2.7e-10 70.1 102 36.3
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 6.1e-10 68.9 115 36.5
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 3.0e-09 66.6 142 35.9
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 3.0e-09 66.6 100 53.0
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 8.8e-09 65.1 100 52.0
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.3e-07 61.2 65 50.8
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 1.3e-07 61.2 84 52.4
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 3.7e-07 59.7 65 50.8
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 4.8e-07 59.3 76 44.7
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 6.3e-07 58.9 55 54.5


User provided reference genes

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