Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30522 Nelumbo nucifera HOM05D003747 ORTHO05D005080 5.3e-75 284.3 143 100.0
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 2.5e-24 115.9 80 70.0
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 3.1e-22 109.0 80 68.8
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 6.8e-22 107.8 80 68.8
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 2.6e-21 105.9 80 67.5
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 9.8e-21 104.0 80 66.2
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 1.7e-20 103.2 80 65.0
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 2.2e-20 102.8 81 66.7
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 2.9e-20 102.4 81 65.4
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.9e-20 102.4 81 65.4
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.9e-20 102.4 81 65.4
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.9e-20 102.4 81 65.4
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 4.9e-20 101.7 79 69.6
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 6.4e-20 101.3 81 65.4
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 6.4e-20 101.3 80 61.2
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 6.4e-20 101.3 80 63.8
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 8.3e-20 100.9 81 65.4
FAN20G0559 Fragaria x ananassa HOM05D003747 ORTHO05D005080 8.3e-20 100.9 81 64.2
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 8.3e-20 100.9 81 66.7
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 8.3e-20 100.9 78 69.2
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.1e-19 100.5 81 66.7
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 1.4e-19 100.1 81 65.4
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 1.9e-19 99.8 84 64.3
FAN14G4182 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.9e-19 99.8 81 64.2
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 2.4e-19 99.4 78 66.7
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 2.4e-19 99.4 81 61.7
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 2.4e-19 99.4 78 65.4
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 3.2e-19 99.0 81 64.2
FAN05G3899 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.2e-19 99.0 81 63.0
FAN12G1591 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.2e-19 99.0 81 63.0
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.2e-19 99.0 81 64.2
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.2e-19 99.0 81 64.2
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 3.2e-19 99.0 81 64.2
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 3.2e-19 99.0 78 66.7
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 3.2e-19 99.0 80 60.0
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 3.2e-19 99.0 76 63.2
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 4.1e-19 98.6 81 63.0
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 4.1e-19 98.6 83 57.8
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 5.4e-19 98.2 81 63.0
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 5.4e-19 98.2 83 59.0
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 5.4e-19 98.2 80 61.2
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 5.4e-19 98.2 80 63.8
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 7.0e-19 97.8 80 61.2
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 7.0e-19 97.8 85 58.8
CsaV3_1G045460 Cucumis sativus L. HOM05D003747 ORTHO05D005080 7.0e-19 97.8 81 63.0
CsaV3_UNG233280 Cucumis sativus L. HOM05D003747 ORTHO05D005080 7.0e-19 97.8 81 63.0
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 7.0e-19 97.8 79 64.6
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 7.0e-19 97.8 82 59.8
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 9.2e-19 97.4 81 63.0
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 9.2e-19 97.4 82 63.4
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 9.2e-19 97.4 80 60.0
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 9.2e-19 97.4 82 62.2
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 1.2e-18 97.1 86 58.1
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 1.2e-18 97.1 81 61.7
FAN03G1393 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.2e-18 97.1 81 61.7
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.2e-18 97.1 82 58.5
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.2e-18 97.1 82 58.5
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 1.2e-18 97.1 112 49.1
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 1.2e-18 97.1 82 65.9
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 1.6e-18 96.7 79 60.8
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.6e-18 96.7 80 61.2
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.6e-18 96.7 80 61.2
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.6e-18 96.7 80 61.2
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 2.1e-18 96.3 80 61.2
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 2.1e-18 96.3 86 58.1
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 2.1e-18 96.3 85 57.6
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 2.1e-18 96.3 81 63.0
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 2.1e-18 96.3 77 61.0
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 2.1e-18 96.3 82 61.0
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 2.1e-18 96.3 82 61.0
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 2.1e-18 96.3 82 61.0
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 2.7e-18 95.9 80 62.5
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 3.5e-18 95.5 85 54.1
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 3.5e-18 95.5 63 69.8
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 3.5e-18 95.5 63 69.8
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 3.5e-18 95.5 81 61.7
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 3.5e-18 95.5 79 65.8
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 3.5e-18 95.5 79 65.8
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 3.5e-18 95.5 82 59.8
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.5e-18 95.5 81 61.7
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 3.5e-18 95.5 81 61.7
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 4.6e-18 95.1 82 58.5
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 4.6e-18 95.1 82 58.5
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 4.6e-18 95.1 79 59.5
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 4.6e-18 95.1 90 54.4
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 4.6e-18 95.1 79 65.8
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 4.6e-18 95.1 81 61.7
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 4.6e-18 95.1 76 61.8
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 6.0e-18 94.7 83 55.4
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 6.0e-18 94.7 86 55.8
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.0e-18 94.7 63 69.8
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 7.8e-18 94.4 82 57.3
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 7.8e-18 94.4 82 57.3
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 7.8e-18 94.4 94 51.1
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.0e-17 94.0 60 73.3
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 1.0e-17 94.0 83 57.8
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 1.0e-17 94.0 83 57.8
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 1.3e-17 93.6 79 59.5
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 1.7e-17 93.2 82 56.1
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 1.7e-17 93.2 80 58.8
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 1.7e-17 93.2 82 58.5
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 1.7e-17 93.2 90 55.6
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 1.7e-17 93.2 76 57.9
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 1.7e-17 93.2 87 56.3
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 1.7e-17 93.2 118 47.5
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 1.7e-17 93.2 63 68.3
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 2.3e-17 92.8 80 60.0
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 3.0e-17 92.4 79 58.2
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 3.0e-17 92.4 81 58.0
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.9e-17 92.0 63 68.3
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 3.9e-17 92.0 82 57.3
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 5.0e-17 91.7 80 57.5
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 5.0e-17 91.7 83 61.4
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 5.0e-17 91.7 83 61.4
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 5.0e-17 91.7 87 52.9
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 5.0e-17 91.7 62 67.7
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 6.6e-17 91.3 106 48.1
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 1.1e-16 90.5 80 57.5
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 1.1e-16 90.5 64 64.1
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 1.1e-16 90.5 64 65.6
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.5e-16 90.1 78 57.7
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.9e-16 89.7 63 65.1
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.9e-16 89.7 61 68.9
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.9e-16 89.7 60 71.7
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 2.5e-16 89.4 63 65.1
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 2.5e-16 89.4 63 65.1
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 2.5e-16 89.4 63 65.1
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 2.5e-16 89.4 80 60.0
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 2.5e-16 89.4 61 67.2
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 2.5e-16 89.4 77 61.0
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 3.3e-16 89.0 77 57.1
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 4.3e-16 88.6 61 65.6
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 4.3e-16 88.6 71 62.0
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 4.3e-16 88.6 58 69.0
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 7.3e-16 87.8 67 62.7
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 9.5e-16 87.4 61 70.5
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.2e-15 87.0 87 54.0
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 2.1e-15 86.3 55 70.9
HPP92_027213 Vanilla planifolia HOM05D003747 ORTHO05D005080 2.8e-15 85.9 62 64.5
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 3.6e-15 85.5 63 60.3
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.4e-14 83.6 60 65.0
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 4.4e-13 78.6 64 54.7
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 5.8e-13 78.2 54 66.7
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 9.9e-13 77.4 50 78.0
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 3.7e-12 75.5 69 52.2
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 4.9e-12 75.1 61 55.7
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.1e-11 73.9 64 59.4
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 1.4e-11 73.6 80 50.0
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 1.9e-11 73.2 80 48.8
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 4.1e-11 72.0 61 62.3
Lsat_1_v5_gn_4_36661 Lactuca sativa HOM05D003747 ORTHO05D005080 5.4e-11 71.6 80 50.0
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.6e-10 70.1 81 51.9
Pp3c1_6530 Physcomitrium patens HOM05D003747 ORTHO05D005080 2.1e-10 69.7 64 51.6
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 3.5e-10 68.9 85 44.7
Lj3A744G93 Lonicera japonica HOM05D000041 ORTHO05D000452 3.5e-10 68.9 60 50.0
Lj3A743G72 Lonicera japonica HOM05D000041 ORTHO05D000452 1.0e-09 67.4 57 49.1
Nn4g23567 Nelumbo nucifera HOM05D003747 ORTHO05D005080 3.9e-09 65.5 36 86.1
Lj3A744G94 Lonicera japonica HOM05D000041 ORTHO05D004955 6.6e-09 64.7 60 46.7
Rhsim06G0014000 Rhododendron simsii HOM05D003747 ORTHO05D005080 9.5e-08 60.8 37 73.0
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 1.2e-07 60.5 50 56.0
Lsat_1_v5_gn_8_75581 Lactuca sativa HOM05D000041 ORTHO05D000452 1.1e-06 57.4 51 52.9
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 2.4e-06 56.2 49 61.2


User provided reference genes

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