Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 2.1e-126 455.7 227 100.0
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 1.3e-72 276.9 168 82.1
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 2.0e-68 263.1 167 78.4
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 4.5e-68 261.9 167 78.4
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 4.5e-68 261.9 167 78.4
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 1.0e-67 260.8 165 79.4
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 2.2e-67 259.6 170 76.5
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.9e-67 259.2 165 77.0
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 5.0e-67 258.5 168 76.2
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 8.4e-67 257.7 167 76.6
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.9e-66 256.5 167 74.9
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 3.0e-64 249.2 167 75.4
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.1e-63 247.3 165 73.9
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.5e-63 246.9 163 74.2
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 1.9e-63 246.5 167 73.1
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 2.5e-63 246.1 165 74.5
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 2.5e-63 246.1 168 75.0
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 3.3e-63 245.7 167 72.5
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 7.4e-63 244.6 170 73.5
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 1.6e-62 243.4 162 75.9
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 2.2e-62 243.0 165 72.7
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 2.2e-62 243.0 161 75.8
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 4.8e-62 241.9 157 77.7
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 6.3e-62 241.5 168 70.2
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 6.3e-62 241.5 161 73.9
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 6.3e-62 241.5 172 69.8
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 8.2e-62 241.1 154 78.6
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.1e-61 240.7 168 73.2
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 1.4e-61 240.4 162 74.1
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 1.4e-61 240.4 174 66.1
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.8e-61 240.0 161 74.5
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 3.1e-61 239.2 202 61.9
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 6.9e-61 238.0 166 71.7
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 3.4e-60 235.7 168 70.2
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 5.9e-60 235.0 162 72.2
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.0e-59 234.2 164 71.3
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.0e-59 234.2 162 71.6
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.7e-59 233.4 162 72.2
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 5.0e-59 231.9 183 66.1
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 8.5e-59 231.1 169 69.8
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.1e-58 230.7 167 70.1
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.1e-58 230.7 168 69.6
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.9e-58 229.9 162 72.2
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 4.2e-58 228.8 175 62.3
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 3.6e-57 225.7 154 72.7
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 4.6e-57 225.3 174 65.5
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.4e-56 223.8 170 66.5
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 1.8e-56 223.4 169 66.9
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.8e-56 223.4 156 70.5
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.8e-56 223.4 166 66.9
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.8e-56 223.4 168 67.3
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 2.3e-56 223.0 149 75.2
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 3.0e-56 222.6 170 65.9
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 3.0e-56 222.6 170 65.9
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 3.0e-56 222.6 170 65.9
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.9e-56 222.2 169 66.9
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 2.0e-55 219.9 168 66.7
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 4.3e-55 218.8 167 65.3
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 4.3e-55 218.8 167 65.3
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 5.7e-55 218.4 173 65.3
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 7.4e-55 218.0 161 67.7
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 9.7e-55 217.6 179 62.6
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.7e-54 216.9 167 65.3
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 2.2e-54 216.5 167 65.9
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 2.8e-54 216.1 167 64.7
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 3.7e-54 215.7 170 65.9
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 3.7e-54 215.7 161 66.5
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.1e-53 214.2 170 65.3
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.1e-53 214.2 161 65.8
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.4e-53 213.8 161 66.5
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 1.8e-53 213.4 168 64.9
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 1.8e-53 213.4 167 64.7
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 2.4e-53 213.0 162 66.7
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 2.4e-53 213.0 154 70.8
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 3.1e-53 212.6 167 64.7
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 9.1e-53 211.1 167 67.7
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 9.1e-53 211.1 166 68.1
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.2e-52 210.7 168 66.1
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 1.2e-52 210.7 167 64.1
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.2e-52 210.7 162 65.4
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.6e-52 209.5 165 66.7
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 3.4e-52 209.1 170 64.7
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 3.4e-52 209.1 171 64.9
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 5.9e-52 208.4 164 66.5
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 5.9e-52 208.4 164 66.5
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 1.7e-51 206.8 167 60.5
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 5.0e-51 205.3 168 64.9
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.9e-50 203.4 170 61.8
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 7.9e-49 198.0 170 60.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 6.7e-48 194.9 167 59.9
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 8.8e-48 194.5 167 59.3
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 1.1e-47 194.1 171 59.6
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 5.7e-47 191.8 156 66.0
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 5.7e-47 191.8 161 60.2
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 2.8e-46 189.5 153 66.0
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.5e-44 183.7 124 74.2
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.0e-40 171.0 120 68.3
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 1.1e-39 167.5 167 54.5
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.3e-39 166.0 171 48.0
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 3.3e-39 166.0 183 48.6
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.3e-38 164.1 183 49.2
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-34 149.8 166 48.2
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 4.0e-32 142.5 106 65.1
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-31 140.6 181 41.4
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 8.3e-30 134.8 214 38.8
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 9.1e-29 131.3 176 46.6
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 5.9e-28 128.6 176 46.6
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.3e-27 127.5 116 54.3
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-25 120.9 186 38.2
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-25 120.6 176 46.6
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-25 119.8 189 40.2
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 3.6e-25 119.4 108 59.3
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-24 116.3 165 45.5
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 8.8e-24 114.8 191 40.8
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 4.4e-23 112.5 148 38.5
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 2.8e-22 109.8 138 42.0
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 1.1e-21 107.8 113 54.9
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-21 107.5 136 41.9
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 9.1e-21 104.8 72 68.1
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-20 104.0 177 39.5
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 3.5e-20 102.8 70 72.9
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 3.5e-20 102.8 138 40.6
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-19 101.3 174 35.1
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.0e-19 101.3 164 34.1
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 8.6e-19 98.2 178 32.6
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.3e-18 95.9 153 36.6
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 4.7e-17 92.4 71 70.4
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 6.1e-17 92.0 76 61.8
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-16 89.7 176 33.0
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 7.5e-15 85.1 175 32.6
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-14 84.0 175 34.9
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.9e-14 82.4 108 43.5
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-13 81.3 110 47.3
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-13 80.9 167 32.3
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-12 77.8 173 32.4
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-12 77.8 167 31.7
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 1.6e-12 77.4 42 85.7
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-12 77.0 182 30.8
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 6.6e-11 72.0 111 40.5
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-10 70.1 181 28.2
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 7.3e-10 68.6 131 31.3
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-09 67.8 115 32.2
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-09 66.6 180 26.1
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 4.7e-09 65.9 166 28.3
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 8.0e-09 65.1 124 31.5
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-08 63.5 145 31.7
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-07 60.5 181 28.7
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-07 60.1 172 28.5
Atru.chr12.1394 Acer truncatum HOM05D004737 ORTHO05D005623 5.8e-07 58.9 180 26.7
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 2.9e-06 56.6 185 26.5


User provided reference genes

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