Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 0.0e+00 1110.9 562 100.0
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.0e-267 924.9 557 83.3
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.5e-266 922.5 555 82.3
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.9e-261 905.6 551 82.2
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 3.5e-255 884.8 562 78.6
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 3.0e-254 881.7 562 78.1
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 5.6e-253 877.5 541 81.0
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 3.4e-250 868.2 562 78.3
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 6.4e-249 864.0 551 78.6
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 8.3e-249 863.6 562 78.1
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 3.5e-247 858.2 561 77.5
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.3e-246 856.3 521 80.4
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.9e-245 852.4 554 76.7
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 5.6e-245 850.9 563 76.2
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.2e-244 849.7 562 77.4
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 2.8e-244 848.6 541 77.8
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 2.3e-243 845.5 550 78.0
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 8.9e-243 843.6 550 76.0
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 3.4e-242 841.6 520 80.4
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 7.6e-242 840.5 554 76.9
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 7.6e-242 840.5 550 75.8
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 9.9e-242 840.1 567 74.3
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.3e-241 839.7 481 84.6
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.3e-241 839.7 516 78.9
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.3e-241 839.7 561 76.5
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 1.7e-241 839.3 549 75.4
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 2.9e-241 838.6 567 74.3
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.7e-241 838.2 469 85.3
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 6.4e-241 837.4 547 77.3
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 3.2e-240 835.1 524 77.5
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 5.4e-240 834.3 530 79.1
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 5.4e-240 834.3 518 78.6
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 5.4e-240 834.3 552 77.0
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.6e-239 832.8 549 76.3
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 1.6e-239 832.8 518 78.4
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 7.8e-239 830.5 562 74.2
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.3e-238 829.7 518 78.2
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.3e-238 829.7 565 75.0
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 2.3e-238 828.9 566 74.9
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.0e-238 828.6 566 74.9
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 3.0e-238 828.6 516 77.7
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 5.1e-238 827.8 554 75.5
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 8.6e-238 827.0 518 78.0
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 8.6e-238 827.0 518 78.0
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.9e-237 825.9 525 78.7
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.5e-237 825.5 523 77.6
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 9.6e-237 823.5 547 76.2
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 4.7e-236 821.2 562 74.6
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 8.1e-236 820.5 504 79.2
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 8.1e-236 820.5 550 73.6
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.4e-235 819.7 537 77.5
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 3.1e-235 818.5 561 72.2
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 8.9e-235 817.0 562 74.4
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 5.8e-234 814.3 561 73.8
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 5.8e-234 814.3 561 74.0
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 9.9e-234 813.5 504 78.6
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 3.8e-233 811.6 561 73.4
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 4.9e-233 811.2 550 74.0
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.9e-232 809.3 550 74.5
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.6e-231 806.2 556 72.3
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 6.0e-231 804.3 562 73.1
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 7.8e-231 803.9 638 66.5
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.3e-230 803.1 565 71.3
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.5e-229 799.7 561 72.5
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 1.3e-228 796.6 513 76.2
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.3e-228 796.6 562 71.7
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.6e-228 796.2 554 72.6
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.1e-227 793.5 550 73.6
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.8e-227 792.7 550 72.4
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.4e-227 792.3 522 77.0
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 9.0e-227 790.4 551 72.6
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 5.8e-226 787.7 536 73.9
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.7e-225 786.2 528 73.7
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 1.7e-225 786.2 535 74.0
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 2.2e-225 785.8 550 72.4
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 4.9e-225 784.6 551 71.9
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 3.2e-224 781.9 577 70.0
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 1.2e-223 780.0 561 71.5
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 6.0e-223 777.7 535 73.5
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 1.7e-222 776.2 529 73.7
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 1.7e-222 776.2 528 73.5
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 1.7e-222 776.2 551 72.2
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 2.3e-222 775.8 525 76.0
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.5e-221 773.1 561 69.7
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 2.5e-221 772.3 518 74.7
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 3.3e-221 771.9 561 69.9
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 4.3e-221 771.5 487 76.8
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 9.6e-221 770.4 548 72.1
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 9.6e-221 770.4 518 74.5
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 9.6e-221 770.4 530 72.5
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 2.1e-220 769.2 551 70.4
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 2.8e-220 768.8 561 69.3
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 4.8e-220 768.1 561 69.7
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 6.9e-219 764.2 554 69.3
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 1.2e-218 763.5 557 71.8
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 3.4e-218 761.9 523 72.7
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.3e-217 760.0 588 67.2
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 6.4e-217 757.7 487 76.2
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 5.1e-214 748.0 555 68.8
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 8.7e-214 747.3 558 68.6
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 5.6e-213 744.6 561 67.4
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.3e-212 743.4 549 68.7
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.6e-212 743.0 561 68.6
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 8.1e-212 740.7 546 70.3
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.1e-211 740.3 463 76.7
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.4e-211 740.0 561 68.3
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 1.4e-211 740.0 550 68.2
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.4e-211 739.2 561 68.3
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 2.2e-209 732.6 539 68.3
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 2.2e-209 732.6 539 68.3
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.9e-205 719.5 561 66.3
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 2.5e-205 719.2 561 65.8
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 2.5e-205 719.2 526 70.7
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.1e-200 703.7 542 69.6
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 2.1e-199 699.5 408 81.6
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.1e-197 693.7 557 65.5
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 2.5e-197 692.6 569 65.0
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 2.8e-196 689.1 551 64.6
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 6.3e-196 688.0 564 63.7
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 9.4e-192 674.1 521 67.4
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 6.1e-191 671.4 565 63.5
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.1e-183 646.4 402 75.6
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.3e-182 642.9 524 64.3
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 1.8e-179 633.3 502 64.9
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.8e-166 590.1 551 57.5
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 2.2e-164 583.2 503 60.6
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.1e-163 579.3 551 59.0
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 4.1e-163 578.9 375 78.9
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.6e-162 577.0 554 56.7
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 4.2e-160 568.9 558 55.7
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.4e-158 563.9 438 66.9
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.4e-149 532.7 369 72.1
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.4e-147 527.3 435 65.1
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 6.8e-142 508.4 478 57.3
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 5.8e-141 505.4 573 49.9
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 8.6e-137 491.5 543 49.7
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 9.8e-133 478.0 553 50.8
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 6.6e-129 465.3 381 63.0
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.6e-125 453.4 389 63.5
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 3.0e-105 386.7 306 60.1
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 5.6e-104 382.5 412 56.6
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 5.8e-101 372.5 504 44.2
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 3.8e-100 369.8 621 38.5
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 3.9e-73 280.0 165 85.5
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.1e-70 271.9 314 51.9
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.0e-64 251.1 269 55.4
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.2e-61 241.9 459 33.1
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.0e-48 198.0 406 36.9
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 3.4e-48 197.2 467 30.4
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 1.8e-46 191.4 406 33.0
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 9.1e-46 189.1 111 82.9
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 5.0e-44 183.3 98 83.7
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.5e-43 181.0 91 91.2
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 1.2e-42 178.7 160 70.6
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.8e-41 174.9 412 32.0
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.2e-40 172.2 156 58.3
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 9.2e-38 162.5 160 60.6
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 5.9e-37 159.8 164 49.4
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 2.3e-36 157.9 105 75.2
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 5.6e-27 126.7 164 48.8
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 5.8e-24 116.7 86 61.6
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.7e-15 88.6 94 63.8
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.1e-14 85.9 40 95.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.3e-12 79.0 48 75.0
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.4e-09 68.9 32 93.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 1.8e-09 68.6 33 87.9
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 3.8e-07 60.8 243 24.7
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 4.9e-07 60.5 109 36.7
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 6.4e-07 60.1 243 24.7
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 6.4e-07 60.1 245 24.5
Nitab4.5_0000441g0190 Nicotiana tabacum HOM05D000992 ORTHO05D001928 6.4e-07 60.1 227 23.3
Nitab4.5_0007845g0030 Nicotiana tabacum HOM05D000992 ORTHO05D001928 6.4e-07 60.1 227 23.3
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 1.1e-06 59.3 243 24.3
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 1.1e-06 59.3 245 24.5
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 1.1e-06 59.3 243 24.3
Zm00001eb115120 Zea mays HOM05D000992 ORTHO05D001928 1.1e-06 59.3 234 24.4
AUR62018095 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.9e-06 58.5 310 22.9
PGSC0003DMG400006156 Solanum tuberosum HOM05D000992 ORTHO05D001928 1.9e-06 58.5 228 22.8
AT5G50550 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 3.2e-06 57.8 240 24.2
AT5G50650 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 3.2e-06 57.8 240 24.2
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 4.1e-06 57.4 57 54.4
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 7.1e-06 56.6 243 23.5


User provided reference genes

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