Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.1e-40 169.5 85 100.0
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 7.4e-32 140.2 124 63.7
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 2.0e-29 132.1 125 61.6
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 1.3e-28 129.4 124 58.9
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 1.3e-28 129.4 106 66.0
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.8e-28 127.9 104 66.3
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 3.8e-28 127.9 125 60.0
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 6.4e-28 127.1 114 60.5
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 2.4e-27 125.2 116 59.5
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 3.2e-27 124.8 125 57.6
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 4.2e-27 124.4 120 58.3
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 5.5e-27 124.0 125 57.6
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 5.5e-27 124.0 125 57.6
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 7.1e-27 123.6 121 60.3
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 7.1e-27 123.6 125 57.6
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 7.1e-27 123.6 125 56.8
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 7.1e-27 123.6 125 57.6
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 9.3e-27 123.2 119 60.5
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 1.2e-26 122.9 120 57.5
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.6e-26 122.5 125 53.6
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 1.6e-26 122.5 121 58.7
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 1.6e-26 122.5 124 58.9
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 2.1e-26 122.1 120 57.5
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 2.7e-26 121.7 125 56.0
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 2.7e-26 121.7 125 56.8
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 3.5e-26 121.3 121 58.7
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.5e-26 121.3 120 55.8
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 4.6e-26 120.9 119 58.0
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 4.6e-26 120.9 119 60.5
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 4.6e-26 120.9 125 57.6
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 6.0e-26 120.6 125 56.0
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 7.9e-26 120.2 125 56.8
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 7.9e-26 120.2 121 56.2
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.0e-25 119.8 121 57.9
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 1.0e-25 119.8 125 56.8
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 1.3e-25 119.4 120 55.8
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 1.3e-25 119.4 119 57.1
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.3e-25 119.4 119 57.1
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.3e-25 119.4 119 57.1
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 1.3e-25 119.4 121 58.7
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.3e-25 119.4 120 57.5
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 1.3e-25 119.4 121 57.0
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 1.3e-25 119.4 123 56.1
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 1.3e-25 119.4 125 56.0
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 1.8e-25 119.0 121 56.2
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.8e-25 119.0 125 55.2
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 1.8e-25 119.0 62 95.2
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 1.8e-25 119.0 125 55.2
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 2.3e-25 118.6 121 57.0
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 2.3e-25 118.6 125 57.6
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 2.3e-25 118.6 125 54.4
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 3.0e-25 118.2 125 52.8
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 3.0e-25 118.2 125 52.8
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 3.0e-25 118.2 62 93.5
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 3.9e-25 117.9 121 56.2
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 3.9e-25 117.9 125 53.6
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 3.9e-25 117.9 118 55.9
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 5.1e-25 117.5 120 56.7
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 5.1e-25 117.5 120 56.7
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 5.1e-25 117.5 121 55.4
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 5.1e-25 117.5 121 55.4
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 6.7e-25 117.1 125 56.0
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 6.7e-25 117.1 123 54.5
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 6.7e-25 117.1 123 54.5
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 8.7e-25 116.7 118 55.1
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 8.7e-25 116.7 125 53.6
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 8.7e-25 116.7 121 53.7
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 8.7e-25 116.7 61 91.8
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.5e-24 115.9 67 88.1
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 1.5e-24 115.9 125 55.2
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.5e-24 115.9 121 57.0
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.5e-24 115.9 121 57.0
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 1.5e-24 115.9 121 56.2
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.9e-24 115.5 119 55.5
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.9e-24 115.5 62 90.3
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.9e-24 115.5 121 53.7
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 1.9e-24 115.5 123 53.7
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.5e-24 115.2 62 91.9
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 2.5e-24 115.2 125 53.6
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 3.3e-24 114.8 120 55.0
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 3.3e-24 114.8 121 55.4
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 3.3e-24 114.8 121 55.4
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 4.3e-24 114.4 121 55.4
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 4.3e-24 114.4 119 56.3
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 4.3e-24 114.4 125 54.4
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.3e-24 114.4 121 54.5
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 4.3e-24 114.4 121 54.5
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 4.3e-24 114.4 125 55.2
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 4.3e-24 114.4 120 53.3
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 7.4e-24 113.6 62 91.9
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 7.4e-24 113.6 121 55.4
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 7.4e-24 113.6 121 55.4
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 7.4e-24 113.6 121 55.4
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 7.4e-24 113.6 121 55.4
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 7.4e-24 113.6 121 55.4
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 7.4e-24 113.6 121 55.4
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 7.4e-24 113.6 62 91.9
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 7.4e-24 113.6 62 91.9
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 7.4e-24 113.6 62 91.9
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 7.4e-24 113.6 121 54.5
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 9.6e-24 113.2 121 54.5
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 9.6e-24 113.2 121 55.4
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 1.3e-23 112.8 124 51.6
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.6e-23 112.5 124 53.2
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.8e-23 111.7 61 86.9
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.8e-23 111.7 61 86.9
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 3.7e-23 111.3 62 85.5
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 3.7e-23 111.3 125 50.4
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 8.2e-23 110.2 124 51.6
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.8e-22 109.0 120 49.2
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 2.4e-22 108.6 62 85.5
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 3.1e-22 108.2 62 87.1
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 4.0e-22 107.8 62 82.3
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 5.3e-22 107.5 62 80.6
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 1.5e-21 105.9 120 50.0
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 2.6e-21 105.1 56 91.1
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 2.6e-21 105.1 56 91.1
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 3.4e-21 104.8 125 50.4
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 4.5e-21 104.4 66 78.8
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 1.7e-20 102.4 120 47.5
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 2.9e-20 101.7 63 76.2
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 4.9e-20 100.9 119 47.9
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 1.1e-19 99.8 84 63.1
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.4e-19 99.4 62 77.4
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 1.9e-19 99.0 124 49.2
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 2.5e-19 98.6 62 77.4
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.6e-18 95.9 91 59.3
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 3.9e-17 91.3 62 74.2
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 6.7e-17 90.5 62 71.0
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 8.7e-17 90.1 80 63.8
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.9e-16 89.0 124 44.4
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 1.9e-16 89.0 62 75.8
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 7.4e-16 87.0 53 69.8
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 1.2e-13 79.7 62 67.7
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.5e-12 73.9 74 55.4
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.1e-11 73.2 97 48.5
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 1.4e-11 72.8 105 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 2.5e-11 72.0 55 60.0
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 3.3e-08 61.6 35 77.1
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 7.4e-08 60.5 35 82.9
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 1.4e-06 56.2 83 48.2
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 3.1e-06 55.1 50 50.0
CBR_g37451 Chara braunii HOM05D004883 ORTHO05D005766 5.3e-06 54.3 45 62.2
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 5.3e-06 54.3 39 66.7


User provided reference genes

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