Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30165 Nelumbo nucifera HOM05D004759 ORTHO05D005722 1.2e-169 599.7 304 100.0
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 2.1e-121 439.5 303 74.9
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 3.6e-121 438.7 303 72.9
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 6.1e-121 438.0 306 72.9
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 6.8e-120 434.5 303 71.3
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 3.4e-119 432.2 304 72.0
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 3.4e-119 432.2 303 70.3
TAR376G0227 Trochodendron aralioides HOM05D004759 ORTHO05D005722 1.3e-118 430.3 303 72.6
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 3.7e-118 428.7 303 70.6
Manes.04G079000 Manihot esculenta HOM05D004759 ORTHO05D005722 3.7e-118 428.7 303 70.0
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 3.7e-118 428.7 303 70.6
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 6.3e-118 427.9 305 70.5
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 1.8e-117 426.4 304 72.0
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 2.4e-117 426.0 303 69.6
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 5.3e-117 424.9 303 69.3
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 7.0e-117 424.5 303 69.3
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 7.0e-117 424.5 303 69.3
MD05G1114400 Malus domestica HOM05D004759 ORTHO05D005722 9.1e-117 424.1 303 70.6
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 1.2e-116 423.7 307 69.4
Atru.chr5.3204 Acer truncatum HOM05D004759 ORTHO05D005722 1.6e-116 423.3 304 70.1
Potri.004G166900 Populus trichocarpa HOM05D004759 ORTHO05D005722 2.7e-116 422.5 303 70.3
Eucgr.I01368 Eucalyptus grandis HOM05D004759 ORTHO05D005722 5.9e-116 421.4 303 69.3
Duzib132G0429 Durio zibethinus HOM05D004759 ORTHO05D005722 7.7e-116 421.0 303 71.0
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 2.9e-115 419.1 307 68.7
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 5.0e-115 418.3 305 69.8
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 1.5e-114 416.8 303 69.0
Sabra04G0112000 Salix brachista HOM05D004759 ORTHO05D005722 1.5e-114 416.8 303 70.0
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 5.5e-114 414.8 303 69.0
Duzib248G0603 Durio zibethinus HOM05D004759 ORTHO05D005722 5.5e-114 414.8 303 68.6
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 5.5e-114 414.8 304 69.1
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 9.4e-114 414.1 304 69.1
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 1.2e-113 413.7 308 68.5
MD10G1116400 Malus domestica HOM05D004759 ORTHO05D005722 1.2e-113 413.7 304 68.8
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 2.1e-113 412.9 303 69.6
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 4.7e-113 411.8 305 69.8
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 6.1e-113 411.4 305 69.5
Rhsim11G0187000 Rhododendron simsii HOM05D004759 ORTHO05D005722 6.1e-113 411.4 303 69.3
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 1.0e-112 410.6 305 69.2
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 1.4e-112 410.2 303 67.7
ClCG02G004370 Citrullus lanatus HOM05D004759 ORTHO05D005722 5.2e-112 408.3 304 68.8
arahy.Tifrunner.gnm1.ann1.8G8R7R Arachis hypogaea HOM05D004759 ORTHO05D005722 6.8e-112 407.9 306 67.6
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.2e-111 407.1 303 67.3
FvH4_2g02210 Fragaria vesca HOM05D004759 ORTHO05D005722 1.2e-111 407.1 303 68.0
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 2.0e-111 406.4 303 67.0
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 4.4e-111 405.2 305 67.9
RcHm_v2.0_Chr6g0245891 Rosa chinensis HOM05D004759 ORTHO05D005722 4.4e-111 405.2 303 68.3
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 5.7e-111 404.8 303 67.7
Lj1g0004015 Lotus japonicus HOM05D004759 ORTHO05D005722 5.7e-111 404.8 303 66.3
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 1.3e-110 403.7 296 70.3
FAN15G1889 Fragaria x ananassa HOM05D004759 ORTHO05D005722 1.3e-110 403.7 303 67.7
Glyma.11G097500 Glycine max HOM05D004759 ORTHO05D005722 1.3e-110 403.7 303 67.3
arahy.Tifrunner.gnm1.ann1.B05S7J Arachis hypogaea HOM05D004759 ORTHO05D005722 1.7e-110 403.3 306 67.0
FAN24G2027 Fragaria x ananassa HOM05D004759 ORTHO05D005722 1.7e-110 403.3 303 67.3
FAN20G1238 Fragaria x ananassa HOM05D004759 ORTHO05D005722 2.8e-110 402.5 303 67.3
TAR628G0309 Trochodendron aralioides HOM05D004759 ORTHO05D005722 1.4e-109 400.2 305 70.2
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 1.6e-108 396.7 306 66.7
FAN27G2697 Fragaria x ananassa HOM05D004759 ORTHO05D005722 2.0e-108 396.4 303 66.7
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 3.5e-108 395.6 303 66.0
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 5.9e-108 394.8 306 66.7
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 7.7e-108 394.4 303 68.3
Sed0015502 Sechium edule HOM05D004759 ORTHO05D005722 7.7e-108 394.4 304 65.8
VMungo1127G1183 Vigna mungo HOM05D004759 ORTHO05D005722 1.0e-107 394.0 304 66.8
Glyma.06G005900 Glycine max HOM05D004759 ORTHO05D005722 1.3e-107 393.7 303 66.3
Glyma.04G006200 Glycine max HOM05D004759 ORTHO05D005722 1.7e-107 393.3 303 66.0
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 2.3e-107 392.9 307 65.1
Nn1g05877 Nelumbo nucifera HOM05D004759 ORTHO05D005722 2.9e-107 392.5 302 69.2
MSTRG.16864 Avicennia marina HOM05D004759 ORTHO05D005722 3.8e-107 392.1 303 66.0
vmacro22691 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 3.8e-107 392.1 304 66.1
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 5.0e-107 391.7 303 67.3
VMungo1309G1106 Vigna mungo HOM05D004759 ORTHO05D005722 8.6e-107 391.0 303 66.0
Phvul.011G025600 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 1.9e-106 389.8 303 66.3
CsaV3_7G000740 Cucumis sativus L. HOM05D004759 ORTHO05D005722 2.5e-106 389.4 304 64.8
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 2.5e-106 389.4 303 67.0
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 7.2e-106 387.9 307 66.1
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 7.2e-106 387.9 307 66.1
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 7.2e-106 387.9 303 65.3
Lalb_Chr19g0139561 Lupinus albus HOM05D004759 ORTHO05D005722 9.5e-106 387.5 304 65.1
MELO3C013383.2 Cucumis melo HOM05D004759 ORTHO05D005722 1.6e-105 386.7 316 63.6
Phvul.009G000900 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 1.6e-105 386.7 303 65.3
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 1.6e-105 386.7 306 65.0
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 2.1e-105 386.3 307 65.8
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 2.1e-105 386.3 307 65.8
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 2.1e-105 386.3 304 64.1
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 3.6e-105 385.6 306 62.7
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 1.0e-104 384.0 306 63.7
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 3.0e-104 382.5 309 64.1
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 4.0e-104 382.1 309 64.4
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 8.9e-104 380.9 306 62.4
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 1.5e-103 380.2 306 64.1
TWI31G1308 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 2.0e-103 379.8 304 65.5
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 2.6e-103 379.4 307 64.8
Ca_15318_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 5.7e-103 378.3 305 63.9
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 2.2e-102 376.3 302 63.6
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 1.8e-101 373.2 305 62.3
Medtr3g117680 Medicago truncatula HOM05D004759 ORTHO05D005722 2.0e-100 369.8 305 63.3
Psat5g003440 Pisum sativum HOM05D004759 ORTHO05D005722 2.0e-100 369.8 305 62.6
SalBow6G6339 Salvia bowleyana HOM05D004759 ORTHO05D005722 2.0e-100 369.8 328 61.0
TPR.G38567 Trifolium pratense HOM05D004759 ORTHO05D005722 2.0e-100 369.8 305 63.6
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 7.3e-98 361.3 301 60.1
Dinv41981 Davidia involucrata HOM05D004759 ORTHO05D005722 2.8e-97 359.4 240 78.3
MSTRG.27666 Avicennia marina HOM05D004759 ORTHO05D005722 1.0e-96 357.5 302 60.6
Nitab4.5_0000980g0350 Nicotiana tabacum HOM05D004759 ORTHO05D005722 1.3e-94 350.5 303 61.4
CDE02G2774 Ceratophyllum demersum HOM05D004759 ORTHO05D005722 4.9e-94 348.6 304 59.5
Os10g0177200 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.2e-92 344.0 303 57.1
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 6.0e-92 341.7 305 58.0
SHI05655 Sapria himalayana HOM05D004759 ORTHO05D005722 1.3e-91 340.5 332 56.6
BcaNung01966 Brassica carinata HOM05D004759 ORTHO05D005722 1.5e-90 337.0 306 58.2
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 1.8e-88 330.1 313 55.9
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 5.1e-83 312.0 250 63.2
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 8.6e-83 311.2 242 65.3
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 4.7e-81 305.4 302 51.7
Actinidia20479 Actinidia chinensis HOM05D004759 ORTHO05D005722 6.8e-80 301.6 249 63.1
vmacro02240 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 4.4e-79 298.9 245 62.0
Manes.11G078000 Manihot esculenta HOM05D004759 ORTHO05D005722 3.9e-75 285.8 214 66.4
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 1.9e-74 283.5 261 56.3
HPP92_003533 Vanilla planifolia HOM05D004759 ORTHO05D005722 1.9e-74 283.5 302 54.6
Zm00001eb010730 Zea mays HOM05D004759 ORTHO05D005722 2.8e-73 279.6 296 51.7
Gohir.D12G032200 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.1e-72 277.7 212 65.1
Duzib052G1250 Durio zibethinus HOM05D004759 ORTHO05D005722 4.0e-72 275.8 215 64.7
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 8.9e-72 274.6 213 64.3
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 4.9e-70 268.9 242 58.3
SEGI_06358 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 1.9e-69 266.9 306 45.8
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 2.1e-68 263.5 224 57.6
SEGI_27774 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 3.5e-68 262.7 306 44.4
Sed0015287 Sechium edule HOM05D004759 ORTHO05D005722 1.0e-67 261.2 214 59.8
Carub.0007s0066 Capsella rubella HOM05D004759 ORTHO05D005722 3.3e-66 256.1 216 59.7
arahy.Tifrunner.gnm1.ann1.R4GM9V Arachis hypogaea HOM05D004759 ORTHO05D005722 4.3e-66 255.8 236 56.8
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 7.3e-66 255.0 214 57.9
Oeu055645.1 Olea europaea HOM05D004759 ORTHO05D005722 6.4e-62 241.9 215 57.2
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 1.3e-57 227.6 215 54.9
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 1.6e-57 227.3 183 61.7
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 1.5e-55 220.7 302 40.7
arahy.Tifrunner.gnm1.ann1.ZR7FTB Arachis hypogaea HOM05D004759 ORTHO05D005722 1.1e-53 214.5 216 53.2
HPP92_007135 Vanilla planifolia HOM05D004759 ORTHO05D005722 1.1e-50 204.5 205 50.7
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 5.6e-50 202.2 304 39.5
Pp3c5_21520 Physcomitrium patens HOM05D004759 ORTHO05D005722 6.2e-49 198.7 277 39.4
Glyma.12G023500 Glycine max HOM05D004759 ORTHO05D005722 1.3e-43 181.0 142 62.0
HPP92_003524 Vanilla planifolia HOM05D004759 ORTHO05D005722 1.1e-40 171.4 129 69.8
arahy.Tifrunner.gnm1.ann1.T5CB16 Arachis hypogaea HOM05D004759 ORTHO05D005722 1.0e-38 164.9 145 55.9
PSO541G2336 Papaver somniferum HOM05D004759 ORTHO05D005722 1.3e-38 164.5 256 39.5
PSO675G1610 Papaver somniferum HOM05D004759 ORTHO05D005722 5.0e-38 162.5 247 37.7
Ciclev10030375m.g Citrus clementina HOM05D004759 ORTHO05D005722 2.5e-37 160.2 290 38.3
Cc02_g16650 Coffea canephora HOM05D004759 ORTHO05D005722 3.6e-28 129.8 123 55.3
SEGI_21972 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 3.0e-27 126.7 207 31.9
Actinidia00584 Actinidia chinensis HOM05D004759 ORTHO05D005722 5.1e-27 125.9 84 79.8
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 7.4e-26 122.1 314 29.6
unitig_21.g20808 Utricularia gibba HOM05D004759 ORTHO05D005722 1.4e-24 117.9 149 45.0
DCAR_026360 Daucus carota HOM05D004759 ORTHO05D005722 1.3e-22 111.3 88 64.8
vmacro02239 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 2.3e-19 100.5 62 80.6
unitig_21.g20809 Utricularia gibba HOM05D004759 ORTHO05D005722 1.7e-17 94.4 71 62.0
Cpa.g.sc37.205 Carica papaya HOM05D004759 ORTHO05D005722 4.1e-16 89.7 57 77.2
SEGI_16256 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 1.3e-14 84.7 111 40.5
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 7.2e-13 79.0 242 21.1
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 2.1e-12 77.4 244 23.0
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 4.0e-11 73.2 260 24.2
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 5.2e-11 72.8 240 21.7
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 5.2e-11 72.8 244 22.1
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 5.2e-11 72.8 244 22.1
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 8.8e-11 72.0 242 21.9
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 3.3e-10 70.1 243 23.0
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 7.5e-10 68.9 223 24.7
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 9.7e-10 68.6 222 24.3
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 4.8e-09 66.2 191 26.7
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 6.3e-09 65.9 252 24.6
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 1.1e-08 65.1 224 23.7
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 2.4e-08 63.9 223 26.0
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 2.4e-08 63.9 223 24.7
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 4.1e-08 63.2 225 24.9
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 4.1e-08 63.2 224 24.1
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 4.1e-08 63.2 213 23.5
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 4.1e-08 63.2 228 25.4
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 4.1e-08 63.2 223 24.2
Ah.13g066420 Amaranthus hybridus HOM05D004759 ORTHO05D005722 5.3e-08 62.8 54 61.1
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 5.3e-08 62.8 229 25.8
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 7.0e-08 62.4 229 25.3
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 9.1e-08 62.0 192 25.5
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 1.2e-07 61.6 228 24.6
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 3.5e-07 60.1 232 22.4
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 4.5e-07 59.7 129 29.5
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 6.5e-06 55.8 218 23.9
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 6.5e-06 55.8 237 19.8
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 8.5e-06 55.5 264 21.6


User provided reference genes

Program Settings