Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30079 Nelumbo nucifera HOM05D002278 ORTHO05D005241 3.5e-200 701.4 358 100.0
TAR625G0861 Trochodendron aralioides HOM05D002278 ORTHO05D005241 5.4e-100 368.6 334 62.9
Nn1g05386 Nelumbo nucifera HOM05D002278 ORTHO05D005241 9.1e-100 367.9 350 60.9
TAR628G0430 Trochodendron aralioides HOM05D002278 ORTHO05D005241 1.1e-97 360.9 347 60.8
TAR376G1069 Trochodendron aralioides HOM05D002278 ORTHO05D005241 3.4e-94 349.4 351 60.1
Aqoxy5G01901 Aquilegia oxysepala HOM05D002278 ORTHO05D005241 2.9e-90 336.3 355 54.1
Actinidia30781 Actinidia chinensis HOM05D002278 ORTHO05D005241 2.5e-89 333.2 358 55.6
Dinv14339 Davidia involucrata HOM05D002278 ORTHO05D005241 5.6e-89 332.0 351 56.7
Thecc.08G105400 Theobroma cacao HOM05D002278 ORTHO05D005241 6.1e-88 328.6 348 54.9
CiPaw.08G045900 Carya illinoinensis HOM05D002278 ORTHO05D005241 1.8e-84 317.0 349 54.2
CSS0019585 Camellia sinensis var. sinensis HOM05D002278 ORTHO05D005241 2.4e-84 316.6 351 55.0
CSS0021059 Camellia sinensis var. sinensis HOM05D002278 ORTHO05D005241 2.4e-84 316.6 351 55.0
PSO210G4340 Papaver somniferum HOM05D002278 ORTHO05D005241 6.0e-83 312.0 359 53.2
QL12p037001 Quercus lobata HOM05D002278 ORTHO05D005241 1.0e-82 311.2 351 53.3
Potri.002G097800 Populus trichocarpa HOM05D002278 ORTHO05D005241 5.0e-82 308.9 359 52.1
COL.COLO4_12056 Corchorus olitorius HOM05D002278 ORTHO05D005241 1.5e-81 307.4 353 52.7
TWI36G1031 Tripterygium wilfordii HOM05D002278 ORTHO05D005241 2.5e-81 306.6 343 52.2
Potri.005G164000 Populus trichocarpa HOM05D002278 ORTHO05D005241 3.3e-81 306.2 354 51.4
Cfa013646 Carpinus fangiana HOM05D002278 ORTHO05D005241 4.3e-81 305.8 351 52.7
PSO447G0245 Papaver somniferum HOM05D002278 ORTHO05D005241 7.3e-81 305.1 356 52.8
Eucgr.B00027 Eucalyptus grandis HOM05D002278 ORTHO05D005241 2.1e-80 303.5 335 53.7
Sabra02G0076800 Salix brachista HOM05D002278 ORTHO05D005241 3.6e-80 302.8 354 52.3
Haze_22283 Corylus avellana HOM05D002278 ORTHO05D005241 6.2e-80 302.0 353 52.4
Dinv44784 Davidia involucrata HOM05D002278 ORTHO05D005241 6.2e-80 302.0 351 54.1
Ciclev10000471m.g Citrus clementina HOM05D002278 ORTHO05D005241 1.4e-79 300.8 345 52.2
Duzib093G1829 Durio zibethinus HOM05D002278 ORTHO05D005241 4.0e-79 299.3 348 51.4
TWI12G0495 Tripterygium wilfordii HOM05D002278 ORTHO05D005241 1.2e-78 297.7 315 53.3
vmacro21263 Vaccinium macrocarpon HOM05D002278 ORTHO05D005241 1.2e-78 297.7 355 52.1
Lj4A101G75 Lonicera japonica HOM05D002278 ORTHO05D005241 4.4e-78 295.8 344 53.2
Rhsim06G0081100 Rhododendron simsii HOM05D002278 ORTHO05D005241 1.7e-77 293.9 358 50.6
Sc23g0000250 Simmondsia chinensis HOM05D002278 ORTHO05D005241 1.7e-77 293.9 335 52.5
Gorai.009G236200 Gossypium raimondii HOM05D002278 ORTHO05D005241 2.2e-77 293.5 332 52.7
CiPaw.07G178800 Carya illinoinensis HOM05D002278 ORTHO05D005241 2.9e-77 293.1 354 50.8
Gohir.A05G225600 Gossypium hirsutum HOM05D002278 ORTHO05D005241 4.9e-77 292.4 332 52.4
Gohir.D05G228300 Gossypium hirsutum HOM05D002278 ORTHO05D005241 6.4e-77 292.0 332 52.4
MBI05_g02439_MAGBIO Magnolia biondii HOM05D002278 ORTHO05D005241 3.2e-76 289.7 349 51.3
Hma1.2p1_0575F.1_g181670 Hydrangea macrophylla HOM05D002278 ORTHO05D005241 2.7e-75 286.6 347 51.0
MBI05_g39047_MAGBIO Magnolia biondii HOM05D002278 ORTHO05D005241 2.7e-75 286.6 349 51.0
Atru.chr13.1173 Acer truncatum HOM05D002278 ORTHO05D005241 6.6e-74 282.0 344 51.7
MELO3C003571.2 Cucumis melo HOM05D002278 ORTHO05D005241 7.3e-73 278.5 317 53.9
GSVIVG01009041001 Vitis vinifera HOM05D002278 ORTHO05D005241 7.3e-73 278.5 312 52.9
CsaV3_3G047530 Cucumis sativus L. HOM05D002278 ORTHO05D005241 9.5e-73 278.1 316 54.1
Manes.18G066400 Manihot esculenta HOM05D002278 ORTHO05D005241 2.1e-72 276.9 346 50.6
Sed0026585 Sechium edule HOM05D002278 ORTHO05D005241 5.2e-71 272.3 350 49.7
CANSAT25G1612 Cannabis sativa HOM05D002278 ORTHO05D005241 1.5e-70 270.8 359 51.3
AUR62027773 Chenopodium quinoa HOM05D002278 ORTHO05D005241 7.5e-70 268.5 360 47.5
ClCG11G014130 Citrullus lanatus HOM05D002278 ORTHO05D005241 7.5e-70 268.5 319 53.0
MSTRG.24451 Avicennia marina HOM05D002278 ORTHO05D005241 1.3e-69 267.7 331 51.1
MBI02_g35744_MAGBIO Magnolia biondii HOM05D002278 ORTHO05D005241 3.2e-68 263.1 359 47.4
AUR62018929 Chenopodium quinoa HOM05D002278 ORTHO05D005241 5.4e-68 262.3 358 45.8
Ah.05g169880 Amaranthus hybridus HOM05D002278 ORTHO05D005241 7.1e-68 261.9 355 47.3
Cc10_g07090 Coffea canephora HOM05D002278 ORTHO05D005241 2.1e-67 260.4 366 46.2
EL10Ac1g01206 Beta vulgaris HOM05D002278 ORTHO05D005241 1.0e-66 258.1 343 46.6
MD08G1184400 Malus domestica HOM05D002278 ORTHO05D005241 1.3e-66 257.7 333 48.0
Phvul.009G031700 Phaseolus vulgaris HOM05D002278 ORTHO05D005241 2.3e-66 256.9 354 46.0
CAN.G193.32 Capsicum annuum HOM05D002278 ORTHO05D005241 3.0e-66 256.5 354 46.0
Hund16899 Selenicereus undatus HOM05D002278 ORTHO05D005241 3.9e-66 256.1 353 45.6
VMungo1309G1178 Vigna mungo HOM05D002278 ORTHO05D005241 6.6e-66 255.4 356 46.1
PGR031G0688 Punica granatum HOM05D002278 ORTHO05D005241 8.6e-66 255.0 331 49.8
Cpa.g.sc36.143 Carica papaya HOM05D002278 ORTHO05D005241 1.1e-65 254.6 335 48.4
MD00G1009800 Malus domestica HOM05D002278 ORTHO05D005241 2.1e-64 250.4 335 46.3
Ca_15253_v3 Cicer arietinum L. HOM05D002278 ORTHO05D005241 2.8e-64 250.0 351 44.7
Ca_30277_v3 Cicer arietinum L. HOM05D002278 ORTHO05D005241 2.8e-64 250.0 351 44.7
Nitab4.5_0007108g0010 Nicotiana tabacum HOM05D002278 ORTHO05D005241 2.4e-63 246.9 353 44.2
PGSC0003DMG400031471 Solanum tuberosum HOM05D002278 ORTHO05D005241 5.2e-63 245.7 356 44.4
DCAR_019222 Daucus carota HOM05D002278 ORTHO05D005241 8.9e-63 245.0 343 47.5
Medtr3g074720 Medicago truncatula HOM05D002278 ORTHO05D005241 8.9e-63 245.0 354 44.9
Oeu053213.1 Olea europaea HOM05D002278 ORTHO05D005241 1.2e-62 244.6 327 45.9
Prupe.1G518600 Prunus persica HOM05D002278 ORTHO05D005241 1.2e-62 244.6 352 44.3
Hund26968 Selenicereus undatus HOM05D002278 ORTHO05D005241 2.0e-62 243.8 341 46.0
Nitab4.5_0000232g0080 Nicotiana tabacum HOM05D002278 ORTHO05D005241 2.6e-62 243.4 349 43.8
Glyma.04G101000 Glycine max HOM05D002278 ORTHO05D005241 3.4e-62 243.0 353 44.8
Duzib116G0517 Durio zibethinus HOM05D002278 ORTHO05D005241 4.4e-62 242.7 344 44.8
Psat5g139720 Pisum sativum HOM05D002278 ORTHO05D005241 7.6e-62 241.9 359 46.8
Peaxi162Scf00392g00317 Petunia axillaris HOM05D002278 ORTHO05D005241 3.8e-61 239.6 353 43.1
RcHm_v2.0_Chr7g0238651 Rosa chinensis HOM05D002278 ORTHO05D005241 4.9e-61 239.2 334 45.5
Solyc04g074270.3 Solanum lycopersicum HOM05D002278 ORTHO05D005241 4.9e-61 239.2 344 44.5
arahy.Tifrunner.gnm1.ann1.D6EEK4 Arachis hypogaea HOM05D002278 ORTHO05D005241 8.4e-61 238.4 331 47.1
arahy.Tifrunner.gnm1.ann1.LTHX1H Arachis hypogaea HOM05D002278 ORTHO05D005241 2.4e-60 236.9 331 47.1
Nitab4.5_0000017g0030 Nicotiana tabacum HOM05D002278 ORTHO05D005241 3.2e-60 236.5 355 43.9
Sopen04g029400 Solanum pennellii HOM05D002278 ORTHO05D005241 7.1e-60 235.3 339 44.5
TPR.G26157 Trifolium pratense HOM05D002278 ORTHO05D005241 9.2e-60 235.0 351 44.2
Duzib041G0062 Durio zibethinus HOM05D002278 ORTHO05D005241 2.1e-59 233.8 349 44.4
Medtr5g064040 Medicago truncatula HOM05D002278 ORTHO05D005241 3.5e-59 233.0 341 45.7
Nitab4.5_0001948g0010 Nicotiana tabacum HOM05D002278 ORTHO05D005241 6.0e-59 232.3 348 44.0
FvH4_5g37110 Fragaria vesca HOM05D002278 ORTHO05D005241 1.0e-58 231.5 329 46.5
FAN18G3225 Fragaria x ananassa HOM05D002278 ORTHO05D005241 1.0e-58 231.5 329 46.5
Lsat_1_v5_gn_6_103260 Lactuca sativa HOM05D002278 ORTHO05D005241 1.7e-58 230.7 337 49.0
Peaxi162Scf00937g00010 Petunia axillaris HOM05D002278 ORTHO05D005241 1.7e-58 230.7 358 43.3
Glyma.06G102700 Glycine max HOM05D002278 ORTHO05D005241 8.7e-58 228.4 351 44.7
FAN08G3415 Fragaria x ananassa HOM05D002278 ORTHO05D005241 7.3e-57 225.3 330 45.2
Lj1g0004815 Lotus japonicus HOM05D002278 ORTHO05D005241 7.3e-57 225.3 355 42.8
CDE10G0424 Ceratophyllum demersum HOM05D002278 ORTHO05D005241 9.6e-57 224.9 354 44.6
FAN13G1947 Fragaria x ananassa HOM05D002278 ORTHO05D005241 1.1e-55 221.5 330 44.8
ECA246G4185 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.8e-55 220.7 364 42.3
HanXRQChr05g0162691 Helianthus annuus HOM05D002278 ORTHO05D005241 1.8e-55 220.7 371 43.1
Lalb_Chr23g0270541 Lupinus albus HOM05D002278 ORTHO05D005241 1.5e-54 217.6 356 41.9
SalBow7G0997 Salvia bowleyana HOM05D002278 ORTHO05D005241 5.8e-54 215.7 326 43.9
Lj1g0005597 Lotus japonicus HOM05D002278 ORTHO05D005241 9.9e-54 214.9 349 41.3
Glyma.14G174400 Glycine max HOM05D002278 ORTHO05D005241 1.7e-53 214.2 343 41.7
Psat2g071800 Pisum sativum HOM05D002278 ORTHO05D005241 1.2e-51 208.0 329 42.6
Glyma.13G089600 Glycine max HOM05D002278 ORTHO05D005241 1.6e-51 207.6 352 40.9
THA.LOC104810738 Tarenaya hassleriana HOM05D002278 ORTHO05D005241 1.7e-50 204.1 347 41.5
Ca_19097_v3 Cicer arietinum L. HOM05D002278 ORTHO05D005241 4.3e-49 199.5 342 41.5
Aa31LG4G8250 Aethionema arabicum HOM05D002278 ORTHO05D005241 5.6e-49 199.1 319 43.3
TAR381G0365 Trochodendron aralioides HOM05D002278 ORTHO05D005241 1.6e-48 197.6 232 51.7
Sed0017143 Sechium edule HOM05D002278 ORTHO05D005241 1.5e-46 191.0 317 43.8
RcHm_v2.0_Chr7g0243931 Rosa chinensis HOM05D002278 ORTHO05D005241 2.0e-46 190.7 281 46.3
TPR.G34975 Trifolium pratense HOM05D002278 ORTHO05D005241 2.0e-46 190.7 336 38.7
Phvul.008G173900 Phaseolus vulgaris HOM05D002278 ORTHO05D005241 3.4e-46 189.9 339 38.6
VMungo0647G1174 Vigna mungo HOM05D002278 ORTHO05D005241 5.8e-46 189.1 347 37.5
AT1G78230 Arabidopsis thaliana HOM05D002278 ORTHO05D005241 7.6e-46 188.7 357 39.8
HPP92_013354 Vanilla planifolia HOM05D002278 ORTHO05D005241 7.1e-44 182.2 351 38.7
SEGI_29472 Sequoiadendron giganteum HOM05D002278 ORTHO05D005241 1.6e-43 181.0 374 37.2
Sp5g33370 Schrenkiella parvula HOM05D002278 ORTHO05D005241 3.5e-43 179.9 334 39.8
SpUn0091_0020 Schrenkiella parvula HOM05D002278 ORTHO05D005241 3.5e-43 179.9 334 39.8
CARHR071690 Cardamine hirsuta HOM05D002278 ORTHO05D005241 3.0e-42 176.8 353 37.1
AL2G38580 Arabidopsis lyrata HOM05D002278 ORTHO05D005241 3.9e-42 176.4 363 38.0
Carub.0002s2514 Capsella rubella HOM05D002278 ORTHO05D005241 1.1e-41 174.9 381 37.3
Thhalv10018319m.g Eutrema salsugineum HOM05D002278 ORTHO05D005241 1.1e-41 174.9 355 39.2
Zm00001eb027820 Zea mays HOM05D002278 ORTHO05D005241 1.9e-41 174.1 336 37.5
Lalb_Chr08g0242091 Lupinus albus HOM05D002278 ORTHO05D005241 7.4e-41 172.2 342 39.5
Actinidia10329 Actinidia chinensis HOM05D002278 ORTHO05D005241 1.1e-39 168.3 174 53.4
BcaC03g15051 Brassica carinata HOM05D002278 ORTHO05D005241 2.4e-39 167.2 334 38.3
BolC2t08672H Brassica oleracea HOM05D002278 ORTHO05D005241 2.4e-39 167.2 334 38.3
C02p17510 Brassica napus HOM05D002278 ORTHO05D005241 3.1e-39 166.8 328 38.4
BcaB03g15998 Brassica carinata HOM05D002278 ORTHO05D005241 6.9e-39 165.6 334 37.1
C02p25950 Brassica napus HOM05D002278 ORTHO05D005241 6.9e-39 165.6 334 38.0
C06p52170 Brassica napus HOM05D002278 ORTHO05D005241 1.5e-38 164.5 330 37.3
BolC6t40240H Brassica oleracea HOM05D002278 ORTHO05D005241 1.5e-38 164.5 330 37.3
CDE10G0135 Ceratophyllum demersum HOM05D002278 ORTHO05D005241 2.0e-38 164.1 237 45.6
A07p43530 Brassica napus HOM05D002278 ORTHO05D005241 1.3e-37 161.4 358 35.8
BraA07t31865Z Brassica rapa HOM05D002278 ORTHO05D005241 1.7e-37 161.0 358 35.8
BcaC08g47399 Brassica carinata HOM05D002278 ORTHO05D005241 2.9e-37 160.2 334 36.2
HPP92_019305 Vanilla planifolia HOM05D002278 ORTHO05D005241 2.7e-35 153.7 334 35.9
Os10g0376200 Oryza sativa ssp. japonica HOM05D002278 ORTHO05D005241 3.5e-35 153.3 330 37.6
Zm00001eb006860 Zea mays HOM05D002278 ORTHO05D005241 6.7e-34 149.1 327 37.6
Actinidia10330 Actinidia chinensis HOM05D002278 ORTHO05D005241 1.9e-33 147.5 147 57.1
Os03g0190300 Oryza sativa ssp. japonica HOM05D002278 ORTHO05D005241 4.3e-33 146.4 373 34.6
Zm00001eb401390 Zea mays HOM05D002278 ORTHO05D005241 1.8e-31 141.0 317 35.6
Psat4g118680 Pisum sativum HOM05D002278 ORTHO05D005241 4.3e-25 119.8 162 45.7
arahy.Tifrunner.gnm1.ann1.1MH1B4 Arachis hypogaea HOM05D000026 ORTHO05D000094 6.3e-24 115.9 133 48.9
arahy.Tifrunner.gnm1.ann1.C3JXZJ Arachis hypogaea HOM05D000026 ORTHO05D000094 2.2e-21 107.5 127 50.4
arahy.Tifrunner.gnm1.ann1.NXEY7R Arachis hypogaea HOM05D000026 ORTHO05D000094 2.2e-21 107.5 127 50.4
Nn3g20949 Nelumbo nucifera HOM05D002278 ORTHO05D005241 2.1e-19 100.9 87 65.5
Nn2g15617 Nelumbo nucifera HOM05D002278 ORTHO05D005241 3.0e-18 97.1 48 93.8
arahy.Tifrunner.gnm1.ann1.WEDR4A Arachis hypogaea HOM05D002278 ORTHO05D005241 1.2e-14 85.1 74 56.8
arahy.Tifrunner.gnm1.ann1.BH8VCP Arachis hypogaea HOM05D002278 ORTHO05D005241 5.9e-14 82.8 98 46.9
arahy.Tifrunner.gnm1.ann1.AQ3PBY Arachis hypogaea HOM05D000026 ORTHO05D000094 7.2e-12 75.9 171 37.4
arahy.Tifrunner.gnm1.ann1.34WEUP Arachis hypogaea HOM05D003470 ORTHO05D004157 2.7e-11 73.9 71 50.7
arahy.Tifrunner.gnm1.ann1.BDA5VD Arachis hypogaea HOM05D003470 ORTHO05D004157 2.7e-11 73.9 71 50.7
arahy.Tifrunner.gnm1.ann1.S47HJ5 Arachis hypogaea HOM05D003470 ORTHO05D004157 2.7e-11 73.9 71 50.7
unitig_32.g11122 Utricularia gibba HOM05D002278 ORTHO05D005241 2.7e-11 73.9 299 29.4
Mapoly0181s0005 Marchantia polymorpha HOM05D002278 ORTHO05D005241 4.7e-11 73.2 371 25.3
arahy.Tifrunner.gnm1.ann1.GJW1JW Arachis hypogaea HOM05D003470 ORTHO05D004157 7.9e-11 72.4 68 51.5
arahy.Tifrunner.gnm1.ann1.XXM254 Arachis hypogaea HOM05D002278 ORTHO05D005241 2.3e-10 70.9 69 52.2
arahy.Tifrunner.gnm1.ann1.UIPR69 Arachis hypogaea HOM05D000026 ORTHO05D000094 3.7e-08 63.5 131 36.6
ATR1132G090 Amborella trichopoda HOM05D002278 ORTHO05D007219 4.8e-08 63.2 115 39.1
THA.LOC104807123 Tarenaya hassleriana HOM05D002278 ORTHO05D007219 1.1e-07 62.0 137 34.3
THA.LOC104826020 Tarenaya hassleriana HOM05D002278 ORTHO05D007219 1.1e-07 62.0 137 34.3
Potri.019G119300 Populus trichocarpa HOM05D002278 ORTHO05D007219 3.1e-07 60.5 142 30.3
Sabra19G0120100 Salix brachista HOM05D002278 ORTHO05D007219 3.1e-07 60.5 132 32.6
Haze_13027 Corylus avellana HOM05D002278 ORTHO05D007219 7.0e-07 59.3 135 28.9
SMO365G0036 Selaginella moellendorffii HOM05D002278 ORTHO05D005241 7.0e-07 59.3 119 34.5
MBI02_g43405_MAGBIO Magnolia biondii HOM05D002278 ORTHO05D007219 9.1e-07 58.9 193 28.5
Sabra19G0133900 Salix brachista HOM05D002278 ORTHO05D007219 2.0e-06 57.8 131 32.1
CDE10G0212 Ceratophyllum demersum HOM05D002278 ORTHO05D005241 2.6e-06 57.4 94 46.8
Cc05_g05690 Coffea canephora HOM05D002278 ORTHO05D007219 5.9e-06 56.2 136 28.7


User provided reference genes

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