Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29332 Nelumbo nucifera HOM05D000422 ORTHO05D030223 1.5e-22 108.6 54 100.0
Nn4g24657 Nelumbo nucifera HOM05D000422 ORTHO05D003570 4.2e-17 90.5 51 88.2
TAR629G0536 Trochodendron aralioides HOM05D000422 ORTHO05D003570 1.6e-16 88.6 51 80.4
Nn7g38360 Nelumbo nucifera HOM05D000422 ORTHO05D030223 3.6e-16 87.4 51 82.4
Cc04_g13250 Coffea canephora HOM05D000422 ORTHO05D003570 8.0e-16 86.3 51 76.5
Lj5A104T40 Lonicera japonica HOM05D000422 ORTHO05D003570 1.4e-15 85.5 51 74.5
Actinidia25778 Actinidia chinensis HOM05D000422 ORTHO05D003570 1.8e-15 85.1 51 76.5
DCAR_010146 Daucus carota HOM05D000422 ORTHO05D003570 2.3e-15 84.7 51 76.5
Hma1.2p1_0322F.1_g124740 Hydrangea macrophylla HOM05D000422 ORTHO05D003570 2.3e-15 84.7 51 78.4
MBI07_g34676_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D003570 2.3e-15 84.7 51 74.5
Rhsim08G0147100 Rhododendron simsii HOM05D000422 ORTHO05D003570 4.0e-15 84.0 51 74.5
GSVIVG01007880001 Vitis vinifera HOM05D000422 ORTHO05D003570 6.8e-15 83.2 51 74.5
Dinv17401 Davidia involucrata HOM05D000422 ORTHO05D003570 8.9e-15 82.8 51 74.5
Oeu008247.1 Olea europaea HOM05D000422 ORTHO05D003570 2.6e-14 81.3 51 74.5
Dinv22789 Davidia involucrata HOM05D000422 ORTHO05D003570 7.5e-14 79.7 49 75.5
Nn1g01966 Nelumbo nucifera HOM05D000422 ORTHO05D030223 7.5e-14 79.7 51 78.4
vmacro17599 Vaccinium macrocarpon HOM05D000422 ORTHO05D003570 9.8e-14 79.3 51 70.6
ATR1153G094 Amborella trichopoda HOM05D000422 ORTHO05D003570 1.7e-13 78.6 51 68.6
Nitab4.5_0003906g0010 Nicotiana tabacum HOM05D000422 ORTHO05D003570 3.7e-13 77.4 51 66.7
Hund02594 Selenicereus undatus HOM05D000422 ORTHO05D003570 4.9e-13 77.0 51 70.6
CSS0011182 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D003570 6.3e-13 76.6 51 68.6
CSS0042047 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D003570 6.3e-13 76.6 51 68.6
Oeu001008.1 Olea europaea HOM05D000422 ORTHO05D003570 6.3e-13 76.6 51 68.6
Oeu001009.1 Olea europaea HOM05D000422 ORTHO05D003570 6.3e-13 76.6 51 68.6
ECA232G3644 Erigeron canadensis HOM05D000422 ORTHO05D003570 8.3e-13 76.3 51 68.6
HanXRQChr16g0502371 Helianthus annuus HOM05D000422 ORTHO05D003570 1.4e-12 75.5 51 70.6
Lsat_1_v5_gn_4_116120 Lactuca sativa HOM05D000422 ORTHO05D003570 1.4e-12 75.5 51 70.6
Sabra15G0081900 Salix brachista HOM05D000422 ORTHO05D003570 1.4e-12 75.5 51 68.6
Sabra15G0082300 Salix brachista HOM05D000422 ORTHO05D003570 1.4e-12 75.5 51 68.6
Actinidia35033 Actinidia chinensis HOM05D000422 ORTHO05D057070 2.4e-12 74.7 51 68.6
Nitab4.5_0001688g0070 Nicotiana tabacum HOM05D000422 ORTHO05D003570 2.4e-12 74.7 51 66.7
CiPaw.11G051900 Carya illinoinensis HOM05D000422 ORTHO05D003570 3.2e-12 74.3 51 66.7
Atru.chr12.1285 Acer truncatum HOM05D000422 ORTHO05D003570 4.1e-12 73.9 51 66.7
Atru.chr12.1292 Acer truncatum HOM05D000422 ORTHO05D003570 4.1e-12 73.9 51 66.7
HanXRQChr09g0270211 Helianthus annuus HOM05D000422 ORTHO05D003570 4.1e-12 73.9 51 66.7
Nitab4.5_0019776g0010 Nicotiana tabacum HOM05D000422 ORTHO05D003570 7.0e-12 73.2 51 64.7
Nitab4.5_0001485g0200 Nicotiana tabacum HOM05D000422 ORTHO05D003570 9.2e-12 72.8 51 64.7
CDE08G0638 Ceratophyllum demersum HOM05D000422 ORTHO05D003570 1.2e-11 72.4 51 66.7
Aqoxy6G00459 Aquilegia oxysepala HOM05D000422 ORTHO05D003570 1.6e-11 72.0 51 62.7
Sc12g0006610 Simmondsia chinensis HOM05D000422 ORTHO05D003570 1.6e-11 72.0 51 66.7
SGA_v2.0_scaffold7G04036 Striga asiatica HOM05D000422 ORTHO05D003570 1.6e-11 72.0 51 70.6
TWI81G0052 Tripterygium wilfordii HOM05D000422 ORTHO05D003570 1.6e-11 72.0 48 68.8
Potri.015G056900 Populus trichocarpa HOM05D000422 ORTHO05D003570 2.0e-11 71.6 51 64.7
TWI60G1501 Tripterygium wilfordii HOM05D000422 ORTHO05D003570 2.0e-11 71.6 48 66.7
Haze_07704 Corylus avellana HOM05D000422 ORTHO05D003570 2.7e-11 71.2 51 60.8
Peaxi162Scf00201g00232 Petunia axillaris HOM05D000422 ORTHO05D003570 2.7e-11 71.2 51 62.7
RhsimUnG0229300 Rhododendron simsii HOM05D000422 ORTHO05D003570 2.7e-11 71.2 51 66.7
SalBow7G2929 Salvia bowleyana HOM05D000422 ORTHO05D003570 2.7e-11 71.2 51 64.7
Hund09899 Selenicereus undatus HOM05D000422 ORTHO05D003570 2.7e-11 71.2 51 66.7
HPP92_022976 Vanilla planifolia HOM05D000422 ORTHO05D003570 2.7e-11 71.2 45 73.3
Glyma.17G077500 Glycine max HOM05D000422 ORTHO05D003570 3.5e-11 70.9 51 64.7
Lsat_1_v5_gn_4_110600 Lactuca sativa HOM05D000422 ORTHO05D003570 3.5e-11 70.9 51 68.6
Peaxi162Scf00013g00518 Petunia axillaris HOM05D000422 ORTHO05D003570 4.5e-11 70.5 51 62.7
Sed0000797 Sechium edule HOM05D000422 ORTHO05D003570 4.5e-11 70.5 44 70.5
unitig_37.g12723 Utricularia gibba HOM05D000422 ORTHO05D003570 4.5e-11 70.5 49 65.3
COL.COLO4_36898 Corchorus olitorius HOM05D000422 ORTHO05D003570 5.9e-11 70.1 48 62.5
COL.COLO4_38108 Corchorus olitorius HOM05D000422 ORTHO05D003570 5.9e-11 70.1 48 62.5
Eucgr.K02521 Eucalyptus grandis HOM05D000422 ORTHO05D003570 5.9e-11 70.1 51 66.7
Oeu008250.1 Olea europaea HOM05D000422 ORTHO05D003570 5.9e-11 70.1 51 64.7
Potri.015G057000 Populus trichocarpa HOM05D000422 ORTHO05D003570 5.9e-11 70.1 51 62.7
ClCG04G011880 Citrullus lanatus HOM05D000422 ORTHO05D003570 7.8e-11 69.7 44 68.2
MELO3C002020.2 Cucumis melo HOM05D000422 ORTHO05D003570 7.8e-11 69.7 44 68.2
FAN08G0773 Fragaria x ananassa HOM05D000422 ORTHO05D003570 7.8e-11 69.7 51 62.7
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.0e-10 69.3 44 65.9
Duzib084G0855 Durio zibethinus HOM05D000422 ORTHO05D003570 1.0e-10 69.3 48 62.5
Duzib205G1888 Durio zibethinus HOM05D000422 ORTHO05D003570 1.0e-10 69.3 48 62.5
Migut.D01695 Erythranthe guttata HOM05D000422 ORTHO05D003570 1.0e-10 69.3 51 58.8
Eucgr.H01528 Eucalyptus grandis HOM05D000422 ORTHO05D003570 1.0e-10 69.3 51 66.7
Prupe.5G203700 Prunus persica HOM05D000422 ORTHO05D003570 1.0e-10 69.3 48 64.6
TPR.G2025 Trifolium pratense HOM05D000422 ORTHO05D003570 1.0e-10 69.3 51 58.8
CANSAT56G0137 Cannabis sativa HOM05D000422 ORTHO05D003570 1.3e-10 68.9 51 62.7
FvH4_5g14020 Fragaria vesca HOM05D000422 ORTHO05D003570 1.3e-10 68.9 51 60.8
FAN13G3227 Fragaria x ananassa HOM05D000422 ORTHO05D003570 1.3e-10 68.9 51 60.8
FAN18G4292 Fragaria x ananassa HOM05D000422 ORTHO05D003570 1.3e-10 68.9 51 60.8
MD14G1210600 Malus domestica HOM05D000422 ORTHO05D003570 1.7e-10 68.6 51 60.8
MD14G1211000 Malus domestica HOM05D000422 ORTHO05D003570 1.7e-10 68.6 51 60.8
Peaxi162Scf00201g00240 Petunia axillaris HOM05D000422 ORTHO05D003570 1.7e-10 68.6 51 64.7
PGR044G0818 Punica granatum HOM05D000422 ORTHO05D003570 1.7e-10 68.6 48 62.5
RcHm_v2.0_Chr7g0182901 Rosa chinensis HOM05D000422 ORTHO05D003570 2.3e-10 68.2 51 58.8
arahy.Tifrunner.gnm1.ann1.38YHDK Arachis hypogaea HOM05D000422 ORTHO05D003570 2.9e-10 67.8 48 64.6
arahy.Tifrunner.gnm1.ann1.TFY1SD Arachis hypogaea HOM05D000422 ORTHO05D003570 2.9e-10 67.8 48 64.6
MSTRG.4455 Avicennia marina HOM05D000422 ORTHO05D003570 2.9e-10 67.8 51 64.7
Glyma.05G022200 Glycine max HOM05D000422 ORTHO05D003570 2.9e-10 67.8 51 62.7
BcaB02g06935 Brassica carinata HOM05D000422 ORTHO05D003570 3.9e-10 67.4 51 62.7
EL10Ac5g11116 Beta vulgaris HOM05D000422 ORTHO05D003570 5.0e-10 67.0 51 58.8
C06p33420 Brassica napus HOM05D000422 ORTHO05D003570 5.0e-10 67.0 51 62.7
BolC6t38457H Brassica oleracea HOM05D000422 ORTHO05D003570 5.0e-10 67.0 51 62.7
Dinv22790 Davidia involucrata HOM05D000422 ORTHO05D003570 6.6e-10 66.6 41 75.6
Peaxi162Scf00013g00629 Petunia axillaris HOM05D000422 ORTHO05D003570 8.6e-10 66.2 51 56.9
Thecc.03G100100 Theobroma cacao HOM05D000422 ORTHO05D003570 8.6e-10 66.2 48 60.4
CAN.G479.15 Capsicum annuum HOM05D000422 ORTHO05D003570 1.1e-09 65.9 50 60.0
AUR62008514 Chenopodium quinoa HOM05D000422 ORTHO05D003570 1.1e-09 65.9 51 60.8
AUR62021576 Chenopodium quinoa HOM05D000422 ORTHO05D003570 1.5e-09 65.5 51 58.8
Ciclev10018766m.g Citrus clementina HOM05D000422 ORTHO05D003570 1.5e-09 65.5 51 62.7
Gohir.A07G069000 Gossypium hirsutum HOM05D000422 ORTHO05D003570 1.5e-09 65.5 51 58.8
Gohir.D07G073400 Gossypium hirsutum HOM05D000422 ORTHO05D003570 1.5e-09 65.5 51 58.8
Gorai.001G077600 Gossypium raimondii HOM05D000422 ORTHO05D003570 1.5e-09 65.5 51 58.8
CAN.G479.16 Capsicum annuum HOM05D000422 ORTHO05D003570 1.9e-09 65.1 50 58.0
Cfa019315 Carpinus fangiana HOM05D000422 ORTHO05D003570 1.9e-09 65.1 51 54.9
Gohir.A03G069700 Gossypium hirsutum HOM05D000422 ORTHO05D003570 1.9e-09 65.1 44 65.9
Lj4g0026924 Lotus japonicus HOM05D000422 ORTHO05D003570 1.9e-09 65.1 48 60.4
RcHm_v2.0_Chr7g0182871 Rosa chinensis HOM05D000422 ORTHO05D003570 1.9e-09 65.1 51 56.9
Gorai.003G100900 Gossypium raimondii HOM05D000422 ORTHO05D003570 2.5e-09 64.7 48 60.4
Carub.0002s2109 Capsella rubella HOM05D000422 ORTHO05D003570 4.3e-09 63.9 51 58.8
Solyc03g115230.3 Solanum lycopersicum HOM05D000422 ORTHO05D003570 4.3e-09 63.9 50 58.0
Sopen03g034270 Solanum pennellii HOM05D000422 ORTHO05D003570 4.3e-09 63.9 50 58.0
PGSC0003DMG400024644 Solanum tuberosum HOM05D000422 ORTHO05D003570 4.3e-09 63.9 50 58.0
AL2G34170 Arabidopsis lyrata HOM05D000422 ORTHO05D003570 5.6e-09 63.5 51 62.7
AT1G74310 Arabidopsis thaliana HOM05D000422 ORTHO05D003570 5.6e-09 63.5 51 62.7
CARHR067570 Cardamine hirsuta HOM05D000422 ORTHO05D003570 5.6e-09 63.5 51 62.7
Medtr4g109450 Medicago truncatula HOM05D000422 ORTHO05D003570 5.6e-09 63.5 48 58.3
Zm00001eb293780 Zea mays HOM05D000422 ORTHO05D003570 7.3e-09 63.2 49 61.2
Ca_21783_v3 Cicer arietinum L. HOM05D000422 ORTHO05D003570 9.5e-09 62.8 49 57.1
Haze_07474 Corylus avellana HOM05D000422 ORTHO05D003570 9.5e-09 62.8 52 53.8
Manes.06G085600 Manihot esculenta HOM05D000422 ORTHO05D003570 9.5e-09 62.8 44 61.4
QL10p019244 Quercus lobata HOM05D000422 ORTHO05D003570 9.5e-09 62.8 44 63.6
Thhalv10018095m.g Eutrema salsugineum HOM05D000422 ORTHO05D003570 1.2e-08 62.4 51 60.8
BraA07t30585Z Brassica rapa HOM05D000422 ORTHO05D003570 1.6e-08 62.0 51 58.8
THA.LOC104812099 Tarenaya hassleriana HOM05D000422 ORTHO05D003570 1.6e-08 62.0 51 64.7
BcaC08g46861 Brassica carinata HOM05D000422 ORTHO05D003570 2.8e-08 61.2 51 58.8
A07p40110 Brassica napus HOM05D000422 ORTHO05D003570 2.8e-08 61.2 51 58.8
C06p48480 Brassica napus HOM05D000422 ORTHO05D003570 2.8e-08 61.2 51 58.8
BolC6t39876H Brassica oleracea HOM05D000422 ORTHO05D003570 2.8e-08 61.2 51 58.8
BraA07t31556Z Brassica rapa HOM05D000422 ORTHO05D003570 2.8e-08 61.2 51 58.8
MD06G1201600 Malus domestica HOM05D000422 ORTHO05D003570 2.8e-08 61.2 51 54.9
Sp5g29470 Schrenkiella parvula HOM05D000422 ORTHO05D003570 2.8e-08 61.2 51 60.8
Gohir.D03G096200 Gossypium hirsutum HOM05D000422 ORTHO05D003570 3.6e-08 60.8 44 61.4
SEGI_29151 Sequoiadendron giganteum HOM05D000422 ORTHO05D003570 3.6e-08 60.8 51 52.9
PSO566G0203 Papaver somniferum HOM05D000422 ORTHO05D003570 6.1e-08 60.1 53 60.4
Aa31LG4G4560 Aethionema arabicum HOM05D000422 ORTHO05D003570 8.0e-08 59.7 44 61.4
Glyma.06G202200 Glycine max HOM05D000422 ORTHO05D003570 8.0e-08 59.7 48 56.2
CSS0028093 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D003570 1.0e-07 59.3 50 56.0
Lalb_Chr13g0302911 Lupinus albus HOM05D000422 ORTHO05D003570 1.4e-07 58.9 48 56.2
HanXRQChr16g0502311 Helianthus annuus HOM05D000422 ORTHO05D003570 1.8e-07 58.5 50 60.0
Os05g0519700 Oryza sativa ssp. japonica HOM05D000422 ORTHO05D003570 1.8e-07 58.5 49 55.1
PSO782G0623 Papaver somniferum HOM05D000422 ORTHO05D003570 1.8e-07 58.5 53 58.5
Pp3c19_4790 Physcomitrium patens HOM05D000422 ORTHO05D003570 1.8e-07 58.5 51 49.0
SGA_v2.0_scaffold114G31923 Striga asiatica HOM05D000422 ORTHO05D003570 1.8e-07 58.5 47 61.7
VMungo1309G2280 Vigna mungo HOM05D000422 ORTHO05D003570 1.8e-07 58.5 48 54.2
Peaxi162Scf00013g00637 Petunia axillaris HOM05D000422 ORTHO05D306565 2.3e-07 58.2 49 55.1
SMO117G0193 Selaginella moellendorffii HOM05D000422 ORTHO05D003570 3.1e-07 57.8 52 51.9
TPR.G28568 Trifolium pratense HOM05D000422 ORTHO05D003570 3.1e-07 57.8 51 56.9
Psat4g047480 Pisum sativum HOM05D000422 ORTHO05D003570 4.0e-07 57.4 48 52.1
Psat4g050520 Pisum sativum HOM05D000422 ORTHO05D003570 5.2e-07 57.0 48 54.2
CSS0013994 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D003570 8.9e-07 56.2 44 61.4
Phvul.004G044100 Phaseolus vulgaris HOM05D000422 ORTHO05D003570 1.2e-06 55.8 48 54.2
Phvul.004G044132 Phaseolus vulgaris HOM05D000422 ORTHO05D003570 1.2e-06 55.8 48 54.2
TPR.G22138 Trifolium pratense HOM05D000422 ORTHO05D003570 1.5e-06 55.5 48 50.0
Mapoly0033s0015 Marchantia polymorpha HOM05D000422 ORTHO05D003570 2.0e-06 55.1 44 52.3
Phvul.009G192501 Phaseolus vulgaris HOM05D000422 ORTHO05D003570 2.0e-06 55.1 48 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4233 Anthoceros agrestis HOM05D000422 ORTHO05D003570 2.6e-06 54.7 51 47.1
Solyc06g082560.3 Solanum lycopersicum HOM05D000422 ORTHO05D003570 2.6e-06 54.7 50 50.0
Sopen06g033960 Solanum pennellii HOM05D000422 ORTHO05D003570 2.6e-06 54.7 50 50.0
Medtr7g028970 Medicago truncatula HOM05D000422 ORTHO05D003570 9.8e-06 52.8 48 52.1


User provided reference genes

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