Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 3.2e-80 301.6 143 100.0
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.5e-61 239.6 143 81.8
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 7.2e-56 220.7 139 78.4
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 1.3e-52 209.9 146 69.9
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 1.3e-52 209.9 134 73.9
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 2.4e-51 205.7 112 83.0
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.2e-50 203.4 113 80.5
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 1.6e-50 203.0 147 65.3
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 1.6e-50 203.0 151 65.6
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 1.0e-49 200.3 143 67.1
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 3.8e-49 198.4 116 75.9
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 3.8e-49 198.4 112 78.6
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 5.0e-49 198.0 125 73.6
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 6.5e-49 197.6 112 80.4
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 6.5e-49 197.6 113 79.6
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 8.5e-49 197.2 110 80.0
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.5e-48 196.4 110 80.0
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 1.9e-48 196.1 111 79.3
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 1.9e-48 196.1 129 74.4
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 2.5e-48 195.7 121 73.6
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 2.5e-48 195.7 154 67.5
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 3.2e-48 195.3 114 77.2
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 5.5e-48 194.5 118 73.7
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 7.2e-48 194.1 121 73.6
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 9.4e-48 193.7 112 79.5
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 9.4e-48 193.7 112 77.7
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.2e-47 193.4 144 66.0
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 1.2e-47 193.4 112 76.8
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 1.2e-47 193.4 112 78.6
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 1.2e-47 193.4 127 69.3
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.6e-47 193.0 129 68.2
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 1.6e-47 193.0 109 78.9
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 1.6e-47 193.0 124 71.8
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 2.1e-47 192.6 113 74.3
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 2.1e-47 192.6 112 75.9
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 2.7e-47 192.2 118 73.7
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 2.7e-47 192.2 118 73.7
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 3.6e-47 191.8 116 75.0
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 3.6e-47 191.8 108 79.6
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 3.6e-47 191.8 114 75.4
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 4.7e-47 191.4 111 79.3
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 4.7e-47 191.4 119 75.6
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 6.1e-47 191.0 110 77.3
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 8.0e-47 190.7 110 76.4
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.4e-46 189.9 111 77.5
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.4e-46 189.9 111 77.5
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 1.4e-46 189.9 116 71.6
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.4e-46 189.9 136 66.2
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 1.8e-46 189.5 112 74.1
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 1.8e-46 189.5 121 70.2
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 1.8e-46 189.5 112 75.0
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 2.3e-46 189.1 113 76.1
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.3e-46 189.1 113 76.1
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.3e-46 189.1 113 76.1
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 3.0e-46 188.7 118 72.9
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 3.0e-46 188.7 117 74.4
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 3.0e-46 188.7 140 65.7
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 5.2e-46 188.0 110 74.5
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 6.8e-46 187.6 107 76.6
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 6.8e-46 187.6 129 67.4
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 1.2e-45 186.8 119 75.6
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 4.4e-45 184.9 122 71.3
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 4.4e-45 184.9 122 71.3
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 4.4e-45 184.9 122 71.3
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 4.4e-45 184.9 106 78.3
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 5.7e-45 184.5 111 77.5
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 9.8e-45 183.7 122 69.7
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 1.3e-44 183.3 109 75.2
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 3.7e-44 181.8 109 73.4
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 4.8e-44 181.4 109 75.2
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 6.3e-44 181.0 109 75.2
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 1.1e-43 180.3 109 74.3
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 1.1e-43 180.3 110 76.4
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 1.1e-43 180.3 122 68.9
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 1.4e-43 179.9 147 58.5
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 3.1e-43 178.7 110 73.6
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 5.4e-43 177.9 108 74.1
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 5.4e-43 177.9 110 72.7
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 7.0e-43 177.6 108 75.0
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 9.1e-43 177.2 110 72.7
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 2.0e-42 176.0 131 64.9
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 3.5e-42 175.3 111 71.2
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 4.5e-42 174.9 111 72.1
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 7.7e-42 174.1 125 65.6
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 7.7e-42 174.1 111 69.4
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 1.3e-41 173.3 104 75.0
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 2.9e-41 172.2 110 71.8
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 3.8e-41 171.8 110 70.9
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 8.6e-41 170.6 153 54.2
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 1.1e-40 170.2 109 69.7
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 3.3e-40 168.7 125 64.8
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 7.2e-40 167.5 109 70.6
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 7.2e-40 167.5 108 70.4
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 7.2e-40 167.5 128 64.1
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 1.2e-39 166.8 111 68.5
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 3.6e-39 165.2 161 52.8
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 6.1e-39 164.5 144 60.4
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.0e-38 163.7 99 75.8
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 4.4e-37 158.3 143 55.2
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 7.5e-37 157.5 129 54.3
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 2.2e-36 156.0 142 53.5
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 1.1e-35 153.7 95 73.7
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.1e-35 153.7 95 74.7
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 4.0e-30 135.2 105 55.2
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 1.7e-28 129.8 102 59.8
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 5.6e-24 114.8 108 50.0
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 9.5e-24 114.0 86 62.8
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 4.0e-22 108.6 94 56.4
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.5e-21 106.7 84 58.3
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 2.4e-19 99.4 89 59.6
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 7.0e-19 97.8 51 78.4
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 6.0e-18 94.7 98 45.9
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 1.5e-16 90.1 53 75.5
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 5.6e-16 88.2 51 78.4
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 1.2e-15 87.0 51 74.5
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 3.6e-15 85.5 51 78.4
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 4.4e-13 78.6 49 71.4
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 5.8e-13 78.2 50 70.0
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 1.3e-12 77.0 44 77.3
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 2.2e-12 76.3 45 71.1
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 3.7e-12 75.5 48 70.8
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 1.5e-08 63.5 77 37.7


User provided reference genes

Program Settings