Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 0.0e+00 4095.8 2231 100.0
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 0.0e+00 1490.7 2296 47.9
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 2.4e-299 1033.5 2314 40.2
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 1.9e-267 927.5 2170 38.3
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 1.6e-258 897.9 2208 39.0
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 8.7e-257 892.1 2265 38.2
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 4.8e-255 886.3 2123 38.8
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.5e-248 864.8 2228 37.0
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 2.6e-237 827.4 2160 37.6
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 1.1e-235 822.0 2045 36.7
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 4.1e-230 803.5 2020 38.4
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 6.9e-230 802.7 2140 36.8
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.2e-226 792.0 2169 36.7
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 7.9e-218 762.7 1100 49.5
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 4.4e-216 756.9 2214 35.4
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.0e-213 748.0 2090 35.9
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.5e-211 741.9 2056 36.3
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.1e-210 738.0 2077 36.9
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 2.7e-202 711.1 2313 35.3
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 7.0e-198 696.4 2081 36.4
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 7.7e-197 693.0 2217 33.8
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 3.8e-196 690.6 2218 34.6
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.6e-194 685.3 2078 34.8
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 2.1e-194 684.9 2054 35.9
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.7e-191 675.2 2064 34.4
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 3.7e-191 674.1 2170 34.2
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.4e-190 672.2 1891 37.1
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.0e-188 666.0 2102 32.3
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 2.3e-180 638.3 2010 34.7
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.9e-180 637.5 2045 33.9
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.8e-178 631.3 1409 40.6
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.8e-177 628.6 2096 34.7
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 2.3e-177 628.2 1995 33.6
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 5.2e-177 627.1 2096 34.9
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 8.9e-177 626.3 2096 34.6
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.5e-176 625.5 800 54.6
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.0e-176 625.2 2133 33.8
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 1.9e-174 618.6 1999 33.5
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 7.8e-173 613.2 1006 47.5
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.1e-171 609.4 820 53.4
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.2e-170 603.6 2084 33.8
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 7.5e-168 596.7 1995 34.3
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 1.6e-165 589.0 2049 33.1
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 2.1e-165 588.6 2035 34.2
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 3.0e-164 584.7 2028 32.9
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 3.1e-161 574.7 740 54.2
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.3e-156 559.3 1050 44.0
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 3.3e-155 554.7 2046 33.0
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 6.2e-154 550.4 2066 33.1
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 8.1e-154 550.1 2180 32.2
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 2.6e-152 545.0 2178 31.1
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 4.4e-152 544.3 1351 39.8
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 9.9e-152 543.1 2067 32.6
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 2.4e-150 538.5 2016 32.7
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.3e-148 532.7 2233 32.1
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.1e-145 523.1 796 50.4
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 5.8e-144 517.3 2233 31.4
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.9e-143 515.0 2147 32.8
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 3.2e-142 511.5 985 43.9
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 2.7e-141 508.4 826 49.5
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 5.1e-140 504.2 1964 32.1
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 8.1e-138 496.9 2074 31.2
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 2.4e-137 495.4 2045 32.5
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 3.4e-136 491.5 825 48.2
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 1.1e-134 486.5 2260 30.4
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 2.4e-134 485.3 933 43.4
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 3.2e-134 485.0 2273 30.2
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 3.9e-132 478.0 1930 30.5
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 4.8e-130 471.1 479 64.3
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.8e-129 469.2 892 45.4
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.4e-126 459.5 1028 40.4
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 2.5e-123 448.7 2108 30.7
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 2.8e-122 445.3 845 44.1
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 1.4e-121 443.0 1114 40.1
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.8e-121 442.6 946 41.2
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 7.6e-120 437.2 885 43.8
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.2e-117 429.9 1029 35.1
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 2.5e-115 422.2 2074 30.3
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 3.7e-114 418.3 767 43.7
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 8.2e-114 417.2 2109 29.4
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 5.3e-113 414.5 1977 29.4
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 2.6e-112 412.1 2050 29.2
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 5.9e-112 411.0 2050 29.2
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 7.7e-112 410.6 824 42.1
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.0e-111 410.2 782 44.9
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.7e-111 409.5 821 42.1
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 2.9e-111 408.7 2274 29.2
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 6.5e-111 407.5 827 42.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 8.5e-111 407.1 827 42.7
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.1e-110 406.8 792 42.2
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.0e-108 400.2 493 50.1
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 8.2e-106 390.6 1176 36.1
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 3.1e-105 388.7 483 56.1
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.0e-104 386.0 2283 28.4
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 6.5e-103 380.9 779 38.8
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.4e-100 373.2 1856 27.4
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 5.2e-100 371.3 817 42.4
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 6.7e-100 370.9 820 42.6
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.4e-97 363.2 925 35.4
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 5.3e-97 361.3 941 37.1
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 4.5e-96 358.2 751 43.4
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 2.2e-95 355.9 1152 35.2
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 3.0e-92 345.5 1892 26.8
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 9.7e-91 340.5 941 36.9
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.8e-89 336.3 856 38.0
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 8.5e-87 327.4 654 38.4
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 1.5e-86 326.6 885 38.1
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 2.5e-86 325.9 1987 27.8
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 5.6e-70 271.6 449 48.3
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 4.9e-66 258.5 665 40.5
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.3e-63 250.4 336 55.1
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.3e-63 249.6 242 55.8
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.5e-51 210.3 281 59.1
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 4.9e-50 205.3 1636 26.0
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 1.0e-47 197.6 1104 28.6
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 3.6e-45 189.1 434 39.6
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 3.8e-42 179.1 480 40.0
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 4.6e-40 172.2 795 27.7
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 8.1e-37 161.4 557 37.3
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.0e-35 156.8 1766 25.7
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.0e-31 144.4 140 55.0
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.3e-31 143.3 200 44.0
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 4.3e-30 139.0 1631 24.8
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 1.4e-28 134.0 131 55.7
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.2e-26 126.7 143 51.0
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 3.2e-25 122.9 142 48.6
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 3.0e-23 116.3 224 35.3
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.1e-22 114.4 442 32.8
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 1.1e-22 114.4 86 68.6
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 7.4e-22 111.7 387 32.3
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 9.0e-20 104.8 132 47.0
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.5e-19 104.0 324 32.4
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 8.4e-18 98.2 98 59.2
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.3e-15 90.9 102 48.0
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.5e-11 77.4 247 30.4
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 3.4e-11 76.3 147 35.4
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 4.2e-09 69.3 144 33.3
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 1.3e-07 64.3 132 38.6


User provided reference genes

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