Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 7.3e-138 493.8 238 100.0
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 4.0e-83 312.0 191 73.8
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 2.8e-73 279.3 186 70.4
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 3.8e-70 268.9 189 67.7
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.9e-69 266.5 189 66.7
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.6e-68 263.5 186 65.1
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 1.6e-68 263.5 187 65.8
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.7e-68 261.9 187 67.4
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.0e-67 258.8 187 66.8
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 4.0e-67 258.8 187 66.8
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 8.9e-67 257.7 195 64.6
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 1.5e-66 256.9 190 65.3
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 2.6e-66 256.1 195 65.6
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 3.4e-66 255.8 185 64.9
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 4.4e-66 255.4 186 65.1
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 7.5e-66 254.6 187 64.7
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 7.5e-66 254.6 188 66.0
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 7.5e-66 254.6 187 65.2
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 9.8e-66 254.2 198 63.6
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 1.3e-65 253.8 188 64.4
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 1.3e-65 253.8 186 64.0
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 2.2e-65 253.1 188 63.8
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 2.2e-65 253.1 187 63.6
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 2.8e-65 252.7 187 62.6
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 3.7e-65 252.3 194 62.4
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 4.9e-65 251.9 188 64.9
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 4.9e-65 251.9 187 63.6
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 6.3e-65 251.5 187 63.6
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 6.3e-65 251.5 194 62.4
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 6.3e-65 251.5 188 63.8
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.1e-64 250.8 187 62.6
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.1e-64 250.8 187 62.6
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 1.1e-64 250.8 194 61.9
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 1.4e-64 250.4 188 63.3
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 2.4e-64 249.6 189 64.0
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 3.1e-64 249.2 189 64.0
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 3.1e-64 249.2 188 62.8
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 3.1e-64 249.2 173 66.5
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 4.1e-64 248.8 187 62.0
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 4.1e-64 248.8 191 61.3
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 4.1e-64 248.8 187 62.0
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 4.1e-64 248.8 195 63.6
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 5.4e-64 248.4 187 64.7
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 5.4e-64 248.4 187 63.6
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 5.4e-64 248.4 188 61.7
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 7.0e-64 248.1 188 62.2
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 7.0e-64 248.1 195 63.1
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 9.2e-64 247.7 193 62.2
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 9.2e-64 247.7 188 62.2
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 9.2e-64 247.7 188 63.8
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 1.6e-63 246.9 188 63.3
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.6e-63 246.9 193 62.2
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 2.7e-63 246.1 186 63.4
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 3.5e-63 245.7 186 62.4
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 3.5e-63 245.7 184 62.5
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.5e-63 245.7 184 62.5
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 3.5e-63 245.7 193 61.7
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 3.5e-63 245.7 187 61.5
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 4.5e-63 245.4 188 61.7
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 4.5e-63 245.4 187 63.6
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 4.5e-63 245.4 189 60.8
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 4.5e-63 245.4 187 62.6
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 5.9e-63 245.0 187 61.5
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 7.8e-63 244.6 184 64.1
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.0e-62 244.2 187 62.0
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 1.0e-62 244.2 192 62.0
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 1.0e-62 244.2 192 61.5
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.0e-62 244.2 192 61.5
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 1.3e-62 243.8 185 63.2
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 1.7e-62 243.4 188 62.2
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 1.7e-62 243.4 187 63.6
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 6.6e-62 241.5 188 62.2
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 8.6e-62 241.1 188 59.6
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.5e-61 240.4 188 61.7
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.5e-61 240.4 187 59.9
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 1.5e-61 240.4 186 58.6
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 1.5e-61 240.4 195 61.0
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 1.9e-61 240.0 188 62.2
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.5e-61 239.6 189 60.3
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.5e-61 239.6 189 59.8
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 2.5e-61 239.6 171 65.5
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 3.3e-61 239.2 188 61.2
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 4.3e-61 238.8 190 58.4
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 4.3e-61 238.8 188 60.1
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 5.6e-61 238.4 187 59.4
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 9.5e-61 237.7 178 65.2
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 1.2e-60 237.3 187 61.5
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.2e-60 237.3 188 61.7
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.6e-60 236.9 187 61.0
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 3.6e-60 235.7 188 59.0
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 3.6e-60 235.7 188 59.6
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 3.6e-60 235.7 188 59.6
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 3.6e-60 235.7 188 59.0
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 3.6e-60 235.7 187 61.0
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 3.6e-60 235.7 188 60.6
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 8.0e-60 234.6 188 59.0
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 1.4e-59 233.8 193 58.5
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 3.1e-59 232.6 186 58.6
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 4.0e-59 232.3 189 59.8
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.2e-58 230.7 182 59.9
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.5e-58 230.3 203 57.6
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 3.7e-57 225.7 189 57.7
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 8.3e-57 224.6 193 53.9
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 3.2e-56 222.6 186 55.9
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 9.2e-56 221.1 234 51.3
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 9.2e-56 221.1 216 52.3
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 1.1e-53 214.2 183 54.6
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 9.5e-53 211.1 188 56.4
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 3.6e-52 209.1 188 53.7
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 4.7e-52 208.8 188 54.3
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.8e-51 206.8 187 52.9
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.0e-50 203.4 149 65.1
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.6e-50 203.0 164 62.2
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 6.4e-49 198.4 193 48.7
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 1.4e-48 197.2 181 52.5
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 1.9e-48 196.8 180 51.1
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 2.3e-46 189.9 150 60.0
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 5.6e-45 185.3 187 51.9
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.2e-39 167.5 136 60.3
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.5e-29 133.3 109 59.6
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.1e-27 127.9 83 65.1
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-25 120.9 102 57.8
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.7e-25 120.6 119 52.1
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 8.4e-25 118.2 80 66.2
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 1.1e-24 117.9 112 55.4
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 3.8e-17 92.8 94 51.1
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 2.1e-07 60.5 75 45.3


User provided reference genes

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