Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27967 Nelumbo nucifera HOM05D000280 ORTHO05D030828 4.0e-42 174.5 97 100.0
Nn1g08543 Nelumbo nucifera HOM05D000280 ORTHO05D004091 2.1e-22 109.0 98 69.4
Manes.14G168200 Manihot esculenta HOM05D000280 ORTHO05D004091 1.3e-13 79.7 98 55.1
PSO017G0192 Papaver somniferum HOM05D000280 ORTHO05D004091 1.3e-13 79.7 99 57.6
PGR083G2432 Punica granatum HOM05D000280 ORTHO05D004091 1.9e-12 75.9 96 51.0
vmacro06077 Vaccinium macrocarpon HOM05D000280 ORTHO05D004091 1.3e-11 73.2 102 52.0
Gohir.A09G174400 Gossypium hirsutum HOM05D000280 ORTHO05D004091 6.3e-11 70.9 96 54.2
Thecc.03G049400 Theobroma cacao HOM05D000280 ORTHO05D004091 6.3e-11 70.9 98 57.1
VMungo0251G3634 Vigna mungo HOM05D000280 ORTHO05D004091 6.3e-11 70.9 95 52.6
Gohir.A11G004200 Gossypium hirsutum HOM05D000280 ORTHO05D004091 2.4e-10 68.9 98 55.1
Glyma.08G051200 Glycine max HOM05D000280 ORTHO05D004091 3.1e-10 68.6 97 53.6
Ciclev10008034m.g Citrus clementina HOM05D000280 ORTHO05D004091 5.3e-10 67.8 96 57.3
Gohir.D11G003700 Gossypium hirsutum HOM05D000280 ORTHO05D004091 1.5e-09 66.2 102 52.0
Gorai.007G004700 Gossypium raimondii HOM05D000280 ORTHO05D004091 1.5e-09 66.2 102 52.0
PSO170G0215 Papaver somniferum HOM05D000280 ORTHO05D004091 1.5e-09 66.2 98 52.0
arahy.Tifrunner.gnm1.ann1.EBY6Y5 Arachis hypogaea HOM05D000280 ORTHO05D004091 2.6e-09 65.5 94 54.3
arahy.Tifrunner.gnm1.ann1.K2X0H0 Arachis hypogaea HOM05D000280 ORTHO05D004091 2.6e-09 65.5 94 54.3
CiPaw.16G090500 Carya illinoinensis HOM05D000280 ORTHO05D004091 4.5e-09 64.7 98 46.9
Eucgr.B00852 Eucalyptus grandis HOM05D000280 ORTHO05D004091 4.5e-09 64.7 95 51.6
Lalb_Chr09g0330591 Lupinus albus HOM05D000280 ORTHO05D004091 4.5e-09 64.7 94 48.9
Actinidia37887 Actinidia chinensis HOM05D000280 ORTHO05D004091 5.9e-09 64.3 100 50.0
Atru.chr9.943 Acer truncatum HOM05D000280 ORTHO05D004091 7.6e-09 63.9 98 56.1
Aqoxy6G00143 Aquilegia oxysepala HOM05D000280 ORTHO05D004091 1.3e-08 63.2 98 52.0
Eucgr.K02259 Eucalyptus grandis HOM05D000280 ORTHO05D004091 1.7e-08 62.8 97 46.4
Potri.013G093400 Populus trichocarpa HOM05D000280 ORTHO05D004091 2.2e-08 62.4 98 52.0
Lalb_Chr05g0221891 Lupinus albus HOM05D000280 ORTHO05D004091 3.8e-08 61.6 96 51.0
MD06G1224200 Malus domestica HOM05D000280 ORTHO05D004091 6.5e-08 60.8 96 51.0
Rhsim05G0101100 Rhododendron simsii HOM05D000280 ORTHO05D004091 8.5e-08 60.5 103 47.6
Gohir.D09G171300 Gossypium hirsutum HOM05D000280 ORTHO05D004091 1.1e-07 60.1 97 50.5
Gorai.006G193100 Gossypium raimondii HOM05D000280 ORTHO05D004091 1.1e-07 60.1 97 50.5
Prupe.5G229200 Prunus persica HOM05D000280 ORTHO05D004091 1.1e-07 60.1 96 55.2
BcaB07g31832 Brassica carinata HOM05D000280 ORTHO05D004091 1.9e-07 59.3 116 47.4
CARHR018650 Cardamine hirsuta HOM05D000280 ORTHO05D004091 2.5e-07 58.9 113 43.4
Haze_18789 Corylus avellana HOM05D000280 ORTHO05D004091 5.5e-07 57.8 118 45.8
Phvul.002G327100 Phaseolus vulgaris HOM05D000280 ORTHO05D004091 5.5e-07 57.8 94 51.1
Rhsim06G0060300 Rhododendron simsii HOM05D000280 ORTHO05D004091 7.2e-07 57.4 104 46.2
Sp1g16090 Schrenkiella parvula HOM05D000280 ORTHO05D004091 7.2e-07 57.4 114 42.1
A06p14120 Brassica napus HOM05D000013 ORTHO05D004091 9.3e-07 57.0 111 43.2
Sabra13G0080200 Salix brachista HOM05D000280 ORTHO05D030828 9.3e-07 57.0 116 42.2
Actinidia18915 Actinidia chinensis HOM05D000280 ORTHO05D030828 1.2e-06 56.6 85 50.6
Ca_17221_v3 Cicer arietinum L. HOM05D000280 ORTHO05D004091 1.6e-06 56.2 94 53.2
BcaC05g25700 Brassica carinata HOM05D000280 ORTHO05D004091 2.7e-06 55.5 111 42.3
C05p16390 Brassica napus HOM05D000280 ORTHO05D004091 2.7e-06 55.5 111 42.3
Rhsim12G0140200 Rhododendron simsii HOM05D000280 ORTHO05D004091 2.7e-06 55.5 95 47.4
BolC5t30336H Brassica oleracea HOM05D000280 ORTHO05D004091 3.6e-06 55.1 110 42.7
AT1G18070 Arabidopsis thaliana HOM05D000280 ORTHO05D004091 4.6e-06 54.7 114 43.9
Lj2A266G59 Lonicera japonica HOM05D000280 ORTHO05D004091 4.6e-06 54.7 100 44.0
MD14G1233200 Malus domestica HOM05D000280 ORTHO05D004091 6.1e-06 54.3 96 50.0


User provided reference genes

Program Settings