Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 2.0e-11 70.9 31 100.0
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.9e-10 66.2 30 93.3
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.9e-10 66.2 30 93.3
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 6.4e-10 65.9 30 90.0
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.4e-09 64.7 30 90.0
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.4e-09 64.7 30 86.7
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.4e-09 64.7 30 86.7
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.9e-09 64.3 30 86.7
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.9e-09 64.3 30 86.7
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.4e-09 63.9 30 90.0
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.4e-09 63.9 30 90.0
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.4e-09 63.9 30 90.0
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.4e-09 63.9 30 90.0
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 3.2e-09 63.5 30 83.3
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 86.7
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 83.3
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 86.7
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 3.2e-09 63.5 30 86.7
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.2e-09 63.2 30 83.3
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 5.4e-09 62.8 30 83.3
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 5.4e-09 62.8 30 83.3
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 5.4e-09 62.8 30 80.0
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 5.4e-09 62.8 30 83.3
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 5.4e-09 62.8 30 83.3
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 5.4e-09 62.8 30 86.7
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 5.4e-09 62.8 30 86.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 7.1e-09 62.4 30 83.3
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 7.1e-09 62.4 30 83.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 7.1e-09 62.4 30 83.3
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.2e-08 61.6 30 80.0
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.2e-08 61.6 30 80.0
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-08 61.6 30 80.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-08 61.6 30 80.0
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-08 61.6 30 80.0
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-08 61.6 30 80.0
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.2e-08 61.6 30 80.0
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.6e-08 61.2 30 83.3
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.6e-08 61.2 30 83.3
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.6e-08 61.2 30 86.7
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.6e-08 61.2 30 86.7
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.7e-08 60.5 30 83.3
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 3.5e-08 60.1 30 80.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.5e-08 60.1 30 80.0
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.5e-08 60.1 30 80.0
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 3.5e-08 60.1 30 80.0
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 4.6e-08 59.7 30 86.7
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.0e-07 58.5 30 76.7
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-07 58.2 30 76.7
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.8e-07 57.8 30 73.3
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.0e-07 57.0 30 80.0
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 9.6e-06 52.0 30 70.0


User provided reference genes

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