Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27087 Nelumbo nucifera HOM05D000215 ORTHO05D007108 5.3e-37 157.1 78 100.0
Nn1g03782 Nelumbo nucifera HOM05D000215 ORTHO05D007108 8.6e-19 96.7 55 89.1
Nn1g06886 Nelumbo nucifera HOM05D000215 ORTHO05D007108 1.8e-16 89.0 55 83.6
TAR626G1550 Trochodendron aralioides HOM05D000215 ORTHO05D007108 9.8e-15 83.2 55 74.5
Hma1.2p1_0809F.1_g221860 Hydrangea macrophylla HOM05D000215 ORTHO05D007108 1.1e-13 79.7 55 69.1
PSO210G4266 Papaver somniferum HOM05D000215 ORTHO05D007108 1.1e-13 79.7 55 74.5
PSO832G3300 Papaver somniferum HOM05D000215 ORTHO05D007108 1.1e-13 79.7 55 74.5
Cpa.g.sc27.164 Carica papaya HOM05D000215 ORTHO05D007108 2.4e-13 78.6 52 71.2
GSVIVG01006112001 Vitis vinifera HOM05D000215 ORTHO05D007108 3.2e-13 78.2 55 69.1
Prupe.4G031100 Prunus persica HOM05D000215 ORTHO05D007108 4.1e-13 77.8 52 71.2
TWI63G1343 Tripterygium wilfordii HOM05D000215 ORTHO05D007108 4.1e-13 77.8 53 71.7
TAR624G0585 Trochodendron aralioides HOM05D000215 ORTHO05D007108 4.1e-13 77.8 55 69.1
TAR627G0161 Trochodendron aralioides HOM05D000215 ORTHO05D007108 5.4e-13 77.4 57 70.2
COL.COLO4_31663 Corchorus olitorius HOM05D000215 ORTHO05D007108 9.2e-13 76.6 52 71.2
Actinidia11824 Actinidia chinensis HOM05D000215 ORTHO05D007108 1.2e-12 76.3 53 75.5
Dinv17864 Davidia involucrata HOM05D000215 ORTHO05D007108 1.2e-12 76.3 55 67.3
Duzib235G1018 Durio zibethinus HOM05D000215 ORTHO05D007108 1.2e-12 76.3 52 69.2
Duzib192G0603 Durio zibethinus HOM05D000215 ORTHO05D007108 2.0e-12 75.5 52 69.2
Actinidia05554 Actinidia chinensis HOM05D000215 ORTHO05D007108 2.7e-12 75.1 56 67.9
Gohir.A10G018000 Gossypium hirsutum HOM05D000215 ORTHO05D007108 2.7e-12 75.1 52 67.3
Gohir.D10G018300 Gossypium hirsutum HOM05D000215 ORTHO05D007108 2.7e-12 75.1 77 51.9
Gorai.011G020300 Gossypium raimondii HOM05D000215 ORTHO05D007108 2.7e-12 75.1 77 51.9
MELO3C007339.2 Cucumis melo HOM05D000215 ORTHO05D007108 3.5e-12 74.7 55 67.3
Duzib160G0747 Durio zibethinus HOM05D000215 ORTHO05D007108 3.5e-12 74.7 52 69.2
Thecc.06G205300 Theobroma cacao HOM05D000215 ORTHO05D007108 3.5e-12 74.7 52 69.2
CSS0016226 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D007108 4.6e-12 74.3 54 64.8
TAR627G1172 Trochodendron aralioides HOM05D000215 ORTHO05D007108 4.6e-12 74.3 77 55.8
CsaV3_6G049540 Cucumis sativus L. HOM05D000215 ORTHO05D007108 7.8e-12 73.6 55 67.3
Lalb_Chr20g0122541 Lupinus albus HOM05D000215 ORTHO05D007108 7.8e-12 73.6 55 65.5
TWI38G1621 Tripterygium wilfordii HOM05D000215 ORTHO05D007108 1.0e-11 73.2 47 74.5
Gohir.A06G208700 Gossypium hirsutum HOM05D000215 ORTHO05D007108 1.3e-11 72.8 52 67.3
Gohir.D06G212400 Gossypium hirsutum HOM05D000215 ORTHO05D007108 1.3e-11 72.8 52 67.3
Gorai.010G253700 Gossypium raimondii HOM05D000215 ORTHO05D007108 1.3e-11 72.8 52 67.3
PGR004G2784 Punica granatum HOM05D000215 ORTHO05D007108 1.3e-11 72.8 52 67.3
ClCG01G022350 Citrullus lanatus HOM05D000215 ORTHO05D007108 1.7e-11 72.4 55 65.5
Lj1P1218T51 Lonicera japonica HOM05D000215 ORTHO05D007108 1.7e-11 72.4 52 65.4
Atru.chr10.2096 Acer truncatum HOM05D000215 ORTHO05D007108 2.9e-11 71.6 49 71.4
Ciclev10015661m.g Citrus clementina HOM05D000215 ORTHO05D007108 2.9e-11 71.6 49 69.4
Sc24g0000650 Simmondsia chinensis HOM05D000215 ORTHO05D007108 2.9e-11 71.6 53 69.8
Cfa000298 Carpinus fangiana HOM05D000215 ORTHO05D007108 3.9e-11 71.2 58 63.8
TAR627G0470 Trochodendron aralioides HOM05D000215 ORTHO05D007108 3.9e-11 71.2 52 67.3
Sed0010978 Sechium edule HOM05D000215 ORTHO05D007108 5.0e-11 70.9 55 65.5
QL05p077977 Quercus lobata HOM05D000215 ORTHO05D007108 8.6e-11 70.1 58 63.8
Haze_06635 Corylus avellana HOM05D000215 ORTHO05D007108 1.5e-10 69.3 58 62.1
Haze_06646 Corylus avellana HOM05D000215 ORTHO05D007108 1.5e-10 69.3 58 62.1
CANSAT56G1993 Cannabis sativa HOM05D000215 ORTHO05D007108 2.5e-10 68.6 56 64.3
Eucgr.D00883 Eucalyptus grandis HOM05D000215 ORTHO05D007108 2.5e-10 68.6 57 61.4
Rhsim13G0164000 Rhododendron simsii HOM05D000215 ORTHO05D007108 2.5e-10 68.6 54 66.7
Manes.17G031300 Manihot esculenta HOM05D000215 ORTHO05D007108 3.3e-10 68.2 49 69.4
Sp7g19440 Schrenkiella parvula HOM05D000215 ORTHO05D007108 3.3e-10 68.2 57 57.9
Carub.0007s2007 Capsella rubella HOM05D000215 ORTHO05D007108 4.3e-10 67.8 57 57.9
CiPaw.10G113900 Carya illinoinensis HOM05D000215 ORTHO05D007108 4.3e-10 67.8 49 69.4
AL7G32750 Arabidopsis lyrata HOM05D000215 ORTHO05D007108 5.6e-10 67.4 57 57.9
BcaC09g51233 Brassica carinata HOM05D000215 ORTHO05D007108 5.6e-10 67.4 53 58.5
C01p15280 Brassica napus HOM05D000215 ORTHO05D007108 5.6e-10 67.4 53 58.5
BolC1t01481H Brassica oleracea HOM05D000215 ORTHO05D007108 5.6e-10 67.4 53 58.5
Manes.16G015200 Manihot esculenta HOM05D000215 ORTHO05D007108 5.6e-10 67.4 49 65.3
AT4G21350 Arabidopsis thaliana HOM05D000215 ORTHO05D007108 7.3e-10 67.0 49 63.3
A01p12690 Brassica napus HOM05D000215 ORTHO05D007108 7.3e-10 67.0 52 61.5
BraA01t01212Z Brassica rapa HOM05D000215 ORTHO05D007108 7.3e-10 67.0 52 61.5
Thhalv10025498m.g Eutrema salsugineum HOM05D000215 ORTHO05D007108 7.3e-10 67.0 57 57.9
CARHR227940 Cardamine hirsuta HOM05D000215 ORTHO05D007108 9.5e-10 66.6 57 56.1
Nitab4.5_0001223g0110 Nicotiana tabacum HOM05D000215 ORTHO05D007108 1.2e-09 66.2 49 65.3
Aqoxy1G02311 Aquilegia oxysepala HOM05D000215 ORTHO05D007108 2.8e-09 65.1 79 53.2
Oeu050572.1 Olea europaea HOM05D000215 ORTHO05D007108 2.8e-09 65.1 52 63.5
Sabra04G0016200 Salix brachista HOM05D000215 ORTHO05D007108 2.8e-09 65.1 52 57.7
Potri.004G028800 Populus trichocarpa HOM05D000215 ORTHO05D007108 3.6e-09 64.7 52 57.7
MSTRG.7259 Avicennia marina HOM05D000215 ORTHO05D007108 4.7e-09 64.3 52 61.5
Dinv18963 Davidia involucrata HOM05D000215 ORTHO05D007108 4.7e-09 64.3 55 60.0
PGSC0003DMG400013880 Solanum tuberosum HOM05D000215 ORTHO05D007108 4.7e-09 64.3 49 65.3
Migut.M01244 Erythranthe guttata HOM05D000215 ORTHO05D007108 6.2e-09 63.9 57 57.9
FAN21G2598 Fragaria x ananassa HOM05D000215 ORTHO05D007108 6.2e-09 63.9 58 60.3
MBI02_g37288_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D007108 6.2e-09 63.9 48 60.4
Nitab4.5_0007666g0010 Nicotiana tabacum HOM05D000215 ORTHO05D007108 6.2e-09 63.9 49 63.3
Ca_18466_v3 Cicer arietinum L. HOM05D000215 ORTHO05D007108 8.0e-09 63.5 53 62.3
Ca_29638_v3 Cicer arietinum L. HOM05D000215 ORTHO05D007108 8.0e-09 63.5 53 62.3
VMungo0251G1997 Vigna mungo HOM05D000215 ORTHO05D007108 8.0e-09 63.5 68 47.1
Phvul.002G219800 Phaseolus vulgaris HOM05D000215 ORTHO05D007108 1.0e-08 63.2 68 47.1
Solyc02g079740.1 Solanum lycopersicum HOM05D000215 ORTHO05D007108 1.0e-08 63.2 49 63.3
Sopen02g024510 Solanum pennellii HOM05D000215 ORTHO05D007108 1.0e-08 63.2 49 63.3
Aa31LG6G3400 Aethionema arabicum HOM05D000215 ORTHO05D007108 1.4e-08 62.8 57 54.4
Oeu040967.1 Olea europaea HOM05D000215 ORTHO05D007108 1.8e-08 62.4 52 61.5
SGA_v2.0_scaffold7G03902 Striga asiatica HOM05D000215 ORTHO05D007108 1.8e-08 62.4 52 59.6
Medtr4g091880 Medicago truncatula HOM05D000215 ORTHO05D007108 2.3e-08 62.0 67 55.2
THA.LOC104806263 Tarenaya hassleriana HOM05D000215 ORTHO05D007108 2.3e-08 62.0 57 52.6
Glyma.08G061100 Glycine max HOM05D000215 ORTHO05D007108 3.1e-08 61.6 53 56.6
Lalb_Chr05g0218061 Lupinus albus HOM05D000215 ORTHO05D007108 3.1e-08 61.6 59 59.3
MD10G1309000 Malus domestica HOM05D000215 ORTHO05D007108 4.0e-08 61.2 40 72.5
Psat7g107360 Pisum sativum HOM05D000215 ORTHO05D007108 4.0e-08 61.2 53 60.4
Glyma.07G188400 Glycine max HOM05D000215 ORTHO05D007108 6.8e-08 60.5 53 56.6
Lj4g0004386 Lotus japonicus HOM05D000215 ORTHO05D007108 6.8e-08 60.5 57 56.1
Peaxi162Scf00537g00062 Petunia axillaris HOM05D000215 ORTHO05D007108 6.8e-08 60.5 48 62.5
THA.LOC104812597 Tarenaya hassleriana HOM05D000215 ORTHO05D007108 6.8e-08 60.5 68 47.1
CDE05G3625 Ceratophyllum demersum HOM05D000893 ORTHO05D000699 1.2e-07 59.7 56 57.1
CDE05G3606 Ceratophyllum demersum HOM05D000766 ORTHO05D000587 1.5e-07 59.3 56 55.4
Cc02_g11970 Coffea canephora HOM05D000215 ORTHO05D007108 1.5e-07 59.3 52 53.8
SHI02135 Sapria himalayana HOM05D000215 ORTHO05D007108 1.5e-07 59.3 52 55.8
arahy.Tifrunner.gnm1.ann1.0GZ16Q Arachis hypogaea HOM05D000215 ORTHO05D007108 2.0e-07 58.9 67 50.7
arahy.Tifrunner.gnm1.ann1.D607PC Arachis hypogaea HOM05D000215 ORTHO05D007108 2.0e-07 58.9 67 50.7
Potri.011G033300 Populus trichocarpa HOM05D000215 ORTHO05D007108 2.0e-07 58.9 52 51.9
Sabra11G0022800 Salix brachista HOM05D000215 ORTHO05D007108 2.0e-07 58.9 71 40.8
Sabra11G0026300 Salix brachista HOM05D000215 ORTHO05D007108 2.0e-07 58.9 71 40.8
SalBow8G0259 Salvia bowleyana HOM05D000215 ORTHO05D007108 2.6e-07 58.5 57 52.6
Lsat_1_v5_gn_7_18661 Lactuca sativa HOM05D000215 ORTHO05D007108 4.4e-07 57.8 50 60.0
EL10Ac8g19955 Beta vulgaris HOM05D000215 ORTHO05D007108 5.8e-07 57.4 53 64.2
unitig_32.g11023 Utricularia gibba HOM05D000215 ORTHO05D007108 7.5e-07 57.0 57 52.6
HanXRQChr05g0130961 Helianthus annuus HOM05D000215 ORTHO05D007108 9.8e-07 56.6 48 64.6
TPR.G13914 Trifolium pratense HOM05D000215 ORTHO05D007108 9.8e-07 56.6 60 55.0
Ah.09g236910 Amaranthus hybridus HOM05D000215 ORTHO05D007108 1.7e-06 55.8 53 62.3
FvH4_3g03220 Fragaria vesca HOM05D000215 ORTHO05D007108 1.7e-06 55.8 49 63.3
ECA236G1007 Erigeron canadensis HOM05D000506 ORTHO05D000369 6.4e-06 53.9 51 58.8
AUR62012536 Chenopodium quinoa HOM05D000215 ORTHO05D007108 8.3e-06 53.5 53 62.3
AUR62014659 Chenopodium quinoa HOM05D000215 ORTHO05D007108 8.3e-06 53.5 53 62.3
AUR62044176 Chenopodium quinoa HOM05D000215 ORTHO05D007108 8.3e-06 53.5 53 62.3
Medtr2g011140 Medicago truncatula HOM05D000215 ORTHO05D007108 8.3e-06 53.5 55 47.3


User provided reference genes

Program Settings