Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 2.7e-172 608.6 316 100.0
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 9.3e-56 221.5 295 50.5
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 7.9e-55 218.4 301 47.5
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 2.2e-52 210.3 296 44.9
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 3.1e-51 206.5 304 44.7
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 1.2e-50 204.5 295 44.1
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 3.2e-48 196.4 297 46.1
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 5.1e-46 189.1 288 44.1
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 8.2e-44 181.8 304 39.1
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 3.1e-43 179.9 314 40.1
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 5.3e-43 179.1 287 41.8
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.2e-42 177.9 292 41.8
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 1.2e-42 177.9 303 38.3
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 3.4e-42 176.4 286 43.0
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 4.5e-42 176.0 291 39.5
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 1.3e-41 174.5 322 39.4
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 1.3e-41 174.5 257 47.5
Phvul.006G076300 Phaseolus vulgaris HOM05D002376 ORTHO05D004654 6.5e-41 172.2 306 37.9
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 1.1e-40 171.4 298 40.9
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 1.1e-40 171.4 290 38.6
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.9e-40 170.6 292 41.1
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 1.9e-40 170.6 345 37.1
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 1.2e-39 167.9 333 35.4
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 1.6e-39 167.5 290 37.9
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 1.6e-39 167.5 289 39.4
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.1e-39 167.2 335 36.7
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 3.6e-39 166.4 309 39.2
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 4.7e-39 166.0 308 39.3
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 4.7e-39 166.0 310 37.7
VMungo0540G1534 Vigna mungo HOM05D002376 ORTHO05D004654 4.7e-39 166.0 293 42.3
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 7.9e-39 165.2 311 38.9
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 7.9e-39 165.2 293 41.0
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 7.9e-39 165.2 347 36.0
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 7.9e-39 165.2 312 39.4
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 1.0e-38 164.9 301 38.9
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 3.0e-38 163.3 283 38.2
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 5.1e-38 162.5 284 38.7
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 1.1e-37 161.4 118 70.3
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.5e-37 161.0 335 35.8
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 1.5e-37 161.0 288 37.5
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 1.5e-37 161.0 342 35.7
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 2.0e-37 160.6 321 38.6
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 2.0e-37 160.6 333 36.6
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 2.0e-37 160.6 317 38.8
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 2.6e-37 160.2 260 41.5
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 4.4e-37 159.5 323 37.2
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 5.7e-37 159.1 292 38.0
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 5.7e-37 159.1 342 35.7
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 1.3e-36 157.9 329 38.0
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.7e-36 157.5 335 35.5
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 2.2e-36 157.1 318 40.9
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 2.2e-36 157.1 309 43.0
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 2.8e-36 156.8 325 36.3
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 2.8e-36 156.8 313 37.4
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 8.2e-36 155.2 286 39.5
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 1.1e-35 154.8 291 39.9
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 1.4e-35 154.5 283 38.5
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 2.4e-35 153.7 351 35.9
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 3.1e-35 153.3 299 38.8
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 3.1e-35 153.3 308 36.7
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 4.1e-35 152.9 105 71.4
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 7.0e-35 152.1 289 38.1
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 9.1e-35 151.8 106 71.7
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 4.5e-34 149.4 301 38.5
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 5.9e-34 149.1 86 80.2
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.0e-33 148.3 144 54.9
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 1.0e-33 148.3 340 36.5
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 1.3e-33 147.9 338 35.5
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 1.7e-33 147.5 339 32.4
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 2.2e-33 147.1 314 36.3
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.9e-33 146.7 291 35.1
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 3.8e-33 146.4 290 41.7
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 5.0e-33 146.0 110 67.3
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 5.0e-33 146.0 134 56.7
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-32 144.8 295 34.2
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.1e-32 144.8 295 34.2
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 1.1e-32 144.8 266 41.0
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.5e-32 144.4 178 48.9
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.9e-32 144.1 174 50.0
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.5e-32 143.7 338 35.2
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.5e-32 143.7 343 35.0
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.5e-32 143.7 149 54.4
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.2e-32 143.3 154 50.6
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.2e-32 143.3 154 50.6
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 3.2e-32 143.3 181 48.1
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 4.2e-32 142.9 114 62.3
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 5.5e-32 142.5 319 36.4
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 7.2e-32 142.1 296 34.8
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 1.6e-31 141.0 292 35.6
Prupe.1G106000 Prunus persica HOM05D002376 ORTHO05D004654 1.6e-31 141.0 133 56.4
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 2.1e-31 140.6 212 41.0
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 2.7e-31 140.2 97 69.1
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 3.6e-31 139.8 314 35.0
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 6.1e-31 139.0 295 33.9
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 6.1e-31 139.0 103 67.0
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 6.1e-31 139.0 149 54.4
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 1.0e-30 138.3 296 40.5
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 1.0e-30 138.3 97 70.1
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 1.4e-30 137.9 297 35.4
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 2.3e-30 137.1 286 40.9
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 2.3e-30 137.1 199 45.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.0e-30 136.7 86 76.7
Prupe.1G108400 Prunus persica HOM05D002376 ORTHO05D004654 3.0e-30 136.7 257 38.9
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 5.2e-30 136.0 120 60.8
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 6.7e-30 135.6 87 77.0
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 6.7e-30 135.6 199 44.7
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 6.7e-30 135.6 100 65.0
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 8.8e-30 135.2 84 77.4
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 1.1e-29 134.8 130 53.1
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 2.0e-29 134.0 287 38.7
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 2.0e-29 134.0 293 36.2
SHI19259 Sapria himalayana HOM05D002376 ORTHO05D004654 2.6e-29 133.7 194 43.8
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 5.7e-29 132.5 289 39.1
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 5.7e-29 132.5 87 69.0
CiPaw.14G052300 Carya illinoinensis HOM05D002376 ORTHO05D004654 5.7e-29 132.5 266 39.5
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 1.3e-28 131.3 82 72.0
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 1.7e-28 131.0 82 72.0
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 2.2e-28 130.6 155 44.5
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 2.8e-28 130.2 293 37.2
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 8.2e-28 128.6 296 37.2
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 1.4e-27 127.9 187 42.8
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 3.1e-27 126.7 105 60.0
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 7.0e-27 125.6 87 67.8
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 9.1e-27 125.2 87 66.7
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 1.2e-26 124.8 109 57.8
Gorai.010G000700 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.5e-24 117.9 170 42.9
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 1.9e-24 117.5 294 38.8
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.1e-23 112.5 316 32.6
Gohir.1Z049465 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-22 111.3 187 42.8
Gohir.A08G000016 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-22 111.3 187 42.8
SEGI_33829 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 8.8e-22 108.6 107 51.4
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 2.0e-21 107.5 107 50.5
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 1.7e-20 104.4 297 31.6
BcaC02g08132 Brassica carinata HOM05D002376 ORTHO05D004654 1.1e-19 101.7 91 56.0
BolC4t27329H Brassica oleracea HOM05D002376 ORTHO05D004654 1.1e-19 101.7 91 56.0
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 1.8e-19 100.9 53 98.1
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 7.0e-19 99.0 99 49.5
C07p50650 Brassica napus HOM05D002376 ORTHO05D004654 2.0e-18 97.4 64 73.4
BolC7t45569H Brassica oleracea HOM05D002376 ORTHO05D004654 2.0e-18 97.4 64 73.4
C02p16040 Brassica napus HOM05D002376 ORTHO05D004654 2.7e-18 97.1 64 73.4
CBR_g20119 Chara braunii HOM05D002376 ORTHO05D004654 3.5e-18 96.7 84 54.8
C09p15830 Brassica napus HOM05D001212 ORTHO05D000246 7.2e-16 89.0 62 69.4
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 2.7e-15 87.0 83 47.0
arahy.Tifrunner.gnm1.ann1.S28F9G Arachis hypogaea HOM05D000138 ORTHO05D000078 4.7e-15 86.3 46 89.1
Gohir.D13G241500 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.8e-14 84.3 302 30.1
arahy.Tifrunner.gnm1.ann1.ANYB6V Arachis hypogaea HOM05D002376 ORTHO05D004654 3.0e-14 83.6 44 88.6
arahy.Tifrunner.gnm1.ann1.D1TE9J Arachis hypogaea HOM05D000138 ORTHO05D000078 3.0e-14 83.6 44 88.6
arahy.Tifrunner.gnm1.ann1.P4WV5Z Arachis hypogaea HOM05D000138 ORTHO05D000078 3.0e-14 83.6 44 88.6
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 4.0e-14 83.2 58 72.4
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 6.8e-14 82.4 129 36.4
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 6.8e-14 82.4 85 45.9
arahy.Tifrunner.gnm1.ann1.HWE26N Arachis hypogaea HOM05D002376 ORTHO05D004654 8.8e-14 82.0 47 78.7
arahy.Tifrunner.gnm1.ann1.C6LA65 Arachis hypogaea HOM05D002376 ORTHO05D004654 1.5e-13 81.3 43 88.4
Gohir.A02G179401 Gossypium hirsutum HOM05D002376 ORTHO05D036218 1.3e-12 78.2 113 45.1
BcaC04g19883 Brassica carinata HOM05D002376 ORTHO05D004654 3.7e-12 76.6 45 77.8
Prupe.3G073500 Prunus persica HOM05D002376 ORTHO05D004654 6.3e-12 75.9 44 81.8
MCO16G118 Micromonas commoda HOM05D002376 ORTHO05D004654 7.7e-10 68.9 130 36.9
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 1.2e-07 61.6 114 31.6
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 6.1e-07 59.3 153 28.1
CDE12G0746 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 8.0e-07 58.9 39 66.7
Cpa.g.sc2.244 Carica papaya HOM05D002376 ORTHO05D004654 3.0e-06 57.0 42 61.9


User provided reference genes

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