Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 4.5e-155 551.2 278 100.0
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 4.3e-113 411.8 271 79.3
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.7e-109 399.8 267 77.5
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 3.8e-109 398.7 267 77.2
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 3.8e-109 398.7 264 78.8
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 2.4e-108 396.0 275 77.1
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.6e-107 393.3 268 76.9
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.6e-107 393.3 231 86.6
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.0e-106 390.6 267 77.2
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.3e-106 390.2 277 75.1
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.7e-106 389.8 271 74.9
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.0e-106 389.0 278 74.5
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 3.9e-106 388.7 278 74.5
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.1e-105 387.1 276 73.2
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.1e-105 387.1 267 75.7
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 2.5e-105 386.0 261 77.4
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 2.5e-105 386.0 271 76.0
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 4.3e-105 385.2 277 74.0
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 5.6e-105 384.8 260 77.7
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 5.6e-105 384.8 278 73.7
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 9.6e-105 384.0 248 80.2
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.2e-104 383.6 260 76.9
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.6e-104 383.3 252 78.2
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 1.6e-104 383.3 266 76.7
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 1.6e-104 383.3 231 84.4
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.1e-104 382.9 271 75.6
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.1e-104 382.9 271 75.6
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.1e-104 382.9 262 76.3
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 2.1e-104 382.9 223 85.7
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.8e-104 382.5 274 73.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.8e-104 382.5 266 75.9
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.8e-104 382.5 267 76.8
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 3.6e-104 382.1 268 76.1
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 4.7e-104 381.7 267 75.7
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 8.1e-104 380.9 247 78.1
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 8.1e-104 380.9 237 83.1
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.4e-103 380.2 266 74.8
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.4e-103 379.4 245 77.6
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.4e-103 379.4 282 70.9
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 2.4e-103 379.4 267 74.2
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 4.0e-103 378.6 217 85.7
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 4.0e-103 378.6 251 79.7
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 4.0e-103 378.6 267 75.7
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 6.9e-103 377.9 273 73.6
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 9.0e-103 377.5 260 76.5
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-102 377.1 252 77.0
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.2e-102 377.1 228 82.0
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.2e-102 377.1 251 76.9
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.5e-102 376.7 265 74.0
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 2.0e-102 376.3 278 69.8
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 3.4e-102 375.6 250 78.0
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.4e-102 375.6 267 76.4
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.4e-102 375.6 279 69.9
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 4.4e-102 375.2 262 76.0
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 5.8e-102 374.8 289 71.3
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 5.8e-102 374.8 268 73.1
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 7.6e-102 374.4 283 72.1
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 1.3e-101 373.6 286 69.9
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.3e-101 373.6 254 75.2
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.3e-101 373.6 200 92.0
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.7e-101 373.2 267 72.3
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.2e-101 372.9 247 76.1
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.8e-101 372.1 280 70.4
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 4.9e-101 371.7 275 71.6
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 8.4e-101 370.9 220 82.7
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 8.4e-101 370.9 199 89.9
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 8.4e-101 370.9 228 79.8
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 1.1e-100 370.5 206 87.4
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.9e-100 369.8 243 76.5
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.9e-100 369.8 225 82.7
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 2.4e-100 369.4 243 76.5
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 3.2e-100 369.0 286 68.5
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 3.2e-100 369.0 252 76.6
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 3.2e-100 369.0 265 74.3
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 4.2e-100 368.6 229 80.3
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 4.2e-100 368.6 275 69.5
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 5.4e-100 368.2 256 73.0
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 5.4e-100 368.2 252 75.8
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 5.4e-100 368.2 215 85.6
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 7.1e-100 367.9 266 73.3
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 9.3e-100 367.5 268 72.8
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-99 367.1 254 75.2
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 2.1e-99 366.3 214 84.1
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.7e-99 365.9 262 71.4
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.7e-99 365.9 198 91.4
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 2.7e-99 365.9 268 72.4
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 2.7e-99 365.9 268 72.0
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 6.0e-99 364.8 229 79.5
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 6.0e-99 364.8 224 81.7
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.3e-98 362.8 261 73.6
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 3.0e-98 362.5 265 70.2
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.9e-98 362.1 188 93.1
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 6.6e-98 361.3 198 88.9
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.5e-97 359.4 214 84.6
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 5.6e-97 358.2 261 73.9
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 4.8e-96 355.1 204 84.8
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 8.1e-96 354.4 257 71.2
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.1e-95 354.0 225 78.2
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.8e-95 353.2 233 75.5
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.8e-95 353.2 225 78.2
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.4e-95 352.8 255 73.3
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 3.1e-95 352.4 276 67.4
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.0e-95 352.1 255 72.9
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.2e-94 350.5 242 76.0
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.2e-94 350.5 253 73.1
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 5.8e-94 348.2 223 79.4
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 1.7e-93 346.7 283 66.1
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 2.2e-93 346.3 255 69.0
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 8.4e-93 344.4 289 66.4
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 1.0e-90 337.4 208 80.3
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.3e-90 337.0 270 69.6
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 3.0e-90 335.9 198 82.3
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.1e-89 334.0 258 70.2
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 3.3e-89 332.4 258 69.0
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 1.6e-88 330.1 271 66.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.8e-88 329.3 319 60.8
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 5.3e-87 325.1 219 76.3
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 5.8e-86 321.6 279 67.0
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 2.9e-85 319.3 196 79.1
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.1e-84 317.4 166 91.6
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.4e-84 317.0 206 78.2
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.3e-82 310.5 193 80.8
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.9e-82 308.9 206 76.7
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 4.8e-80 302.0 166 89.8
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.8e-79 300.1 220 72.7
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 2.2e-77 293.1 240 62.9
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 6.5e-77 291.6 212 73.1
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.1e-76 290.8 198 71.2
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 3.2e-76 289.3 219 70.3
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 5.5e-76 288.5 154 89.0
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 1.3e-74 283.9 212 72.2
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.8e-74 283.5 168 80.4
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.7e-74 281.2 151 90.7
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.5e-73 280.4 145 94.5
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.5e-73 280.4 271 59.0
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.9e-73 280.0 240 65.8
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.7e-73 277.7 271 60.9
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.3e-72 275.0 158 84.2
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.3e-69 267.3 148 85.8
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.7e-69 266.9 244 63.1
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.9e-68 263.5 159 83.6
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.6e-67 260.4 212 67.0
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 1.8e-66 256.9 272 57.0
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.3e-64 248.4 149 83.2
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 7.7e-62 241.5 237 59.9
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 7.2e-60 235.0 167 73.7
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.5e-57 227.3 175 68.6
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 2.0e-54 216.9 195 49.7
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 1.0e-53 214.5 182 57.7
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 9.4e-52 208.0 171 64.3
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.2e-48 196.8 142 70.4
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 5.9e-46 188.7 290 43.8
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 3.1e-39 166.4 153 56.9
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.0e-38 163.7 188 44.1
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 8.5e-37 158.3 208 41.8
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 4.0e-34 149.4 228 41.2
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.3e-32 144.4 84 85.7
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 7.0e-23 112.1 61 86.9
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 2.7e-22 110.2 60 86.7
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 3.6e-19 99.8 59 84.7
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 5.2e-18 95.9 127 49.6
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.6e-11 73.2 71 54.9
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.7e-11 72.8 40 87.5
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.2e-11 72.4 40 85.0
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.1e-10 71.6 118 38.1
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.4e-10 71.2 55 61.8
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.3e-10 70.5 36 88.9
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 4.4e-09 66.2 37 86.5
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 1.3e-08 64.7 31 96.8
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.9e-07 60.8 42 69.0
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 9.2e-07 58.5 34 79.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 2.1e-06 57.4 30 86.7


User provided reference genes

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