Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.4e-55 219.5 122 100.0
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.9e-29 131.3 76 84.2
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 6.4e-21 104.4 102 56.9
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 8.4e-21 104.0 76 71.1
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.6e-19 99.8 74 68.9
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 7.9e-19 97.4 94 59.6
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.0e-18 97.1 74 66.2
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.3e-18 96.7 95 55.8
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.3e-18 96.7 95 55.8
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 2.3e-18 95.9 74 66.2
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.3e-18 95.9 95 55.8
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.0e-18 95.5 75 64.0
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 3.9e-18 95.1 75 65.3
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 3.9e-18 95.1 74 63.5
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 3.9e-18 95.1 75 64.0
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.9e-18 95.1 74 64.9
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.9e-18 95.1 69 68.1
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 5.1e-18 94.7 75 64.0
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 5.1e-18 94.7 75 65.3
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 5.1e-18 94.7 94 57.4
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 5.1e-18 94.7 74 66.2
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 8.7e-18 94.0 75 64.0
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 8.7e-18 94.0 74 66.2
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.5e-17 93.2 75 62.7
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.5e-17 93.2 76 61.8
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 1.5e-17 93.2 69 68.1
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.9e-17 92.8 74 64.9
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.5e-17 92.4 75 64.0
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 2.5e-17 92.4 74 62.2
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.5e-17 92.4 95 54.7
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.5e-17 92.4 103 52.4
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.3e-17 92.0 74 62.2
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 3.3e-17 92.0 74 63.5
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.3e-17 92.0 94 55.3
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 3.3e-17 92.0 79 58.2
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 3.3e-17 92.0 103 51.5
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 5.6e-17 91.3 75 62.7
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 7.3e-17 90.9 74 63.5
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 9.6e-17 90.5 75 58.7
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.3e-16 90.1 75 61.3
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 1.3e-16 90.1 75 61.3
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.3e-16 90.1 68 63.2
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 1.6e-16 89.7 75 61.3
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-16 89.7 75 61.3
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-16 89.7 75 61.3
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-16 89.7 75 61.3
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-16 89.7 75 61.3
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-16 89.7 75 61.3
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-16 89.7 75 61.3
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.6e-16 89.7 94 55.3
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 2.1e-16 89.4 74 60.8
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.1e-16 89.4 75 64.0
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 2.1e-16 89.4 74 62.2
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 2.1e-16 89.4 95 53.7
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 2.8e-16 89.0 94 55.3
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 2.8e-16 89.0 74 62.2
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.8e-16 89.0 66 68.2
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 2.8e-16 89.0 74 60.8
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 2.8e-16 89.0 67 67.2
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 2.8e-16 89.0 66 68.2
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.6e-16 88.6 75 60.0
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.8e-16 88.2 68 66.2
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.8e-16 88.2 68 66.2
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 4.8e-16 88.2 74 58.1
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 6.2e-16 87.8 102 50.0
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 6.2e-16 87.8 102 50.0
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 8.1e-16 87.4 75 61.3
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 8.1e-16 87.4 96 54.2
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 8.1e-16 87.4 75 58.7
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 8.1e-16 87.4 95 52.6
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 8.1e-16 87.4 102 50.0
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.1e-15 87.0 66 66.7
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 1.1e-15 87.0 75 58.7
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.1e-15 87.0 94 55.3
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.1e-15 87.0 65 67.7
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.4e-15 86.7 75 58.7
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.8e-15 86.3 74 59.5
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.8e-15 86.3 74 59.5
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.8e-15 86.3 74 59.5
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.8e-15 86.3 74 59.5
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.8e-15 86.3 74 59.5
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.4e-15 85.9 75 57.3
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 3.1e-15 85.5 66 62.1
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 3.1e-15 85.5 66 62.1
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.0e-15 85.1 65 67.7
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.0e-15 85.1 75 60.0
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 4.0e-15 85.1 74 59.5
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 6.9e-15 84.3 76 57.9
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 6.9e-15 84.3 66 63.6
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 6.9e-15 84.3 66 63.6
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 9.0e-15 84.0 74 56.8
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 9.0e-15 84.0 74 56.8
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 9.0e-15 84.0 74 56.8
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.2e-14 83.6 74 56.8
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.2e-14 83.6 74 56.8
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.5e-14 83.2 75 57.3
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.5e-14 83.2 75 58.7
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 2.0e-14 82.8 66 65.2
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.0e-14 82.8 63 66.7
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 2.6e-14 82.4 74 58.1
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 5.8e-14 81.3 65 61.5
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 5.8e-14 81.3 74 55.4
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 5.8e-14 81.3 63 66.7
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.6e-14 80.9 77 57.1
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.9e-14 80.5 77 57.1
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 1.3e-13 80.1 74 54.1
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 1.7e-13 79.7 66 60.6
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-13 79.7 75 57.3
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.7e-13 79.7 75 57.3
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.7e-13 79.7 75 57.3
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.7e-13 79.7 73 54.8
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.2e-13 79.3 67 58.2
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 2.2e-13 79.3 75 57.3
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 2.2e-13 79.3 67 58.2
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 2.2e-13 79.3 75 57.3
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 2.2e-13 79.3 94 51.1
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.9e-13 79.0 91 52.7
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 2.9e-13 79.0 78 52.6
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.8e-13 78.6 77 55.8
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 3.8e-13 78.6 94 50.0
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 4.9e-13 78.2 74 55.4
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 6.4e-13 77.8 71 59.2
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.4e-12 76.6 67 55.2
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.4e-12 76.6 74 55.4
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 4.2e-12 75.1 66 54.5
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 4.2e-12 75.1 74 59.5
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.2e-12 75.1 74 54.1
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.1e-12 74.3 75 50.7
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 7.1e-12 74.3 74 52.7
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 9.3e-12 73.9 68 54.4
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.6e-11 73.2 74 52.7
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.1e-11 72.8 74 50.0
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 2.7e-11 72.4 64 56.2
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 6.0e-11 71.2 74 51.4
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 6.0e-11 71.2 74 51.4
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 7.9e-11 70.9 102 41.2
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 7.9e-11 70.9 94 48.9
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 7.9e-11 70.9 74 51.4
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.0e-10 70.5 77 53.2
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.0e-10 70.5 74 50.0
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.0e-10 70.5 74 50.0
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 3.0e-10 68.9 103 43.7
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 6.7e-10 67.8 104 38.5
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.1e-09 67.0 94 41.5
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.9e-09 66.2 102 39.2
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.6e-09 64.7 64 54.7
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.6e-08 63.2 103 39.8
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 2.1e-08 62.8 89 40.4
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 6.2e-08 61.2 62 48.4
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 8.1e-08 60.8 63 49.2
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 9.0e-07 57.4 72 48.6


User provided reference genes

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