Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.4e-59 232.6 113 100.0
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.2e-21 106.7 92 63.0
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.1e-19 100.1 120 50.0
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 5.6e-19 97.8 120 47.5
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 2.1e-18 95.9 120 49.2
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 6.2e-18 94.4 120 48.3
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.1e-17 93.6 120 45.8
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.1e-17 92.0 120 45.8
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 4.0e-17 91.7 128 43.0
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 4.0e-17 91.7 120 45.8
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 5.2e-17 91.3 120 45.0
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 5.2e-17 91.3 120 45.8
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 8.9e-17 90.5 120 45.8
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 1.2e-16 90.1 120 45.8
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.2e-16 90.1 120 45.0
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.0e-16 89.4 128 42.2
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.0e-16 89.4 128 42.2
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.6e-16 89.0 120 45.0
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 5.8e-16 87.8 120 44.2
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 7.5e-16 87.4 128 42.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 9.8e-16 87.0 128 43.0
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 9.8e-16 87.0 120 45.0
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 9.8e-16 87.0 120 44.2
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.3e-15 86.7 120 42.5
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.7e-15 86.3 120 44.2
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 2.9e-15 85.5 120 44.2
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.9e-15 85.5 120 43.3
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.9e-15 85.5 120 43.3
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 2.9e-15 85.5 120 43.3
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 4.9e-15 84.7 120 42.5
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 6.4e-15 84.3 120 43.3
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 8.3e-15 84.0 120 42.5
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.1e-14 83.6 120 42.5
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.4e-14 83.2 120 41.7
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.4e-14 83.2 120 43.3
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.9e-14 82.8 120 41.7
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.9e-14 82.8 120 43.3
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.4e-14 82.4 128 43.0
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.4e-14 82.4 117 43.6
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 2.4e-14 82.4 120 43.3
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 3.2e-14 82.0 120 42.5
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 3.2e-14 82.0 120 42.5
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 3.2e-14 82.0 120 42.5
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 4.1e-14 81.6 120 44.2
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 5.4e-14 81.3 120 40.8
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 5.4e-14 81.3 120 41.7
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 5.4e-14 81.3 120 42.5
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 5.4e-14 81.3 120 42.5
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 7.0e-14 80.9 120 40.8
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 7.0e-14 80.9 120 42.5
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 7.0e-14 80.9 120 41.7
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.2e-13 80.1 120 41.7
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 1.2e-13 80.1 120 41.7
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.2e-13 80.1 120 41.7
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.6e-13 79.7 120 41.7
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.6e-13 79.7 120 41.7
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.6e-13 79.7 120 41.7
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 2.0e-13 79.3 120 41.7
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 2.0e-13 79.3 120 41.7
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.0e-13 79.3 120 40.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 2.0e-13 79.3 130 41.5
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.0e-13 79.3 120 41.7
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.7e-13 79.0 120 40.8
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 2.7e-13 79.0 120 40.8
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 3.5e-13 78.6 120 41.7
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 3.5e-13 78.6 120 41.7
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 3.5e-13 78.6 120 37.5
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 4.6e-13 78.2 120 42.5
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 4.6e-13 78.2 120 40.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 6.0e-13 77.8 120 40.8
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 6.0e-13 77.8 120 40.8
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 6.0e-13 77.8 120 40.8
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 7.8e-13 77.4 120 39.2
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 7.8e-13 77.4 120 39.2
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 7.8e-13 77.4 120 39.2
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 7.8e-13 77.4 120 41.7
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.3e-12 76.6 120 40.0
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.7e-12 76.3 120 40.0
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 3.0e-12 75.5 120 40.0
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.0e-12 75.5 120 42.5
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.9e-12 75.1 120 39.2
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 5.0e-12 74.7 126 38.1
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 5.0e-12 74.7 120 37.5
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 6.6e-12 74.3 120 40.8
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 6.6e-12 74.3 120 40.0
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 6.6e-12 74.3 120 39.2
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 8.6e-12 73.9 120 40.0
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 4.3e-11 71.6 130 36.9
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.6e-10 69.7 120 36.7
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 2.8e-10 68.9 138 34.8
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.8e-10 68.9 120 37.5
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 3.6e-10 68.6 120 36.7
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 3.6e-10 68.6 138 34.8
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 4.7e-10 68.2 120 36.7
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 4.7e-10 68.2 62 58.1
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 4.7e-10 68.2 62 58.1
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 6.2e-10 67.8 120 37.5
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 6.2e-10 67.8 120 36.7
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.8e-09 66.2 146 32.9
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.1e-09 65.5 159 31.4
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 4.0e-09 65.1 133 33.1
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 5.2e-09 64.7 121 36.4
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 8.9e-09 63.9 97 39.2
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 8.9e-09 63.9 127 35.4
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 3.4e-08 62.0 61 55.7
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.8e-08 61.2 157 30.6
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.8e-08 61.2 157 30.6


User provided reference genes

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