Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 1.7e-120 436.8 373 100.0
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.9e-92 343.6 399 75.9
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 8.9e-90 334.7 399 80.7
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 1.2e-89 334.3 222 80.6
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 1.3e-88 330.9 399 74.9
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 2.2e-88 330.1 222 78.4
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 3.2e-87 326.2 222 77.5
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 4.1e-87 325.9 222 77.9
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 9.2e-87 324.7 408 73.3
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 3.5e-86 322.8 409 73.8
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 1.0e-85 321.2 221 78.3
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.0e-85 321.2 222 77.9
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.3e-85 320.9 410 73.4
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.3e-85 320.9 222 76.1
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 3.0e-85 319.7 222 73.0
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 3.0e-85 319.7 399 74.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 5.1e-85 318.9 222 72.5
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 5.1e-85 318.9 222 75.7
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 6.6e-85 318.5 222 72.1
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.1e-84 317.8 219 77.6
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.5e-84 317.4 222 76.6
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 5.6e-84 315.5 222 73.4
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.3e-84 315.1 222 77.0
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.3e-84 315.1 222 77.0
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 9.6e-84 314.7 222 74.8
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 9.6e-84 314.7 222 72.1
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 1.6e-83 313.9 397 63.2
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 2.8e-83 313.2 222 74.3
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 4.7e-83 312.4 225 75.1
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 4.7e-83 312.4 222 74.3
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 1.1e-82 311.2 222 73.9
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.8e-82 310.5 222 75.2
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 4.0e-82 309.3 222 73.4
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.9e-82 308.5 222 72.1
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 6.9e-82 308.5 401 72.1
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 6.9e-82 308.5 222 71.2
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 9.0e-82 308.1 215 77.2
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.2e-81 307.8 219 74.0
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 1.2e-81 307.8 222 74.8
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 3.4e-81 306.2 222 73.0
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 3.4e-81 306.2 222 74.8
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 4.4e-81 305.8 399 69.4
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 4.4e-81 305.8 399 69.4
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 5.8e-81 305.4 222 72.5
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 9.9e-81 304.7 221 74.2
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 1.3e-80 304.3 222 74.8
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 1.3e-80 304.3 222 74.8
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.3e-80 304.3 222 70.7
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.7e-80 303.9 221 71.0
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 2.2e-80 303.5 222 73.4
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 2.2e-80 303.5 396 71.5
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.9e-80 303.1 222 73.9
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.9e-80 303.1 222 73.9
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 4.9e-80 302.4 221 70.6
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 6.4e-80 302.0 397 73.6
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.1e-79 301.2 221 70.1
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.1e-79 301.2 222 73.0
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.4e-79 300.8 222 73.4
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 1.9e-79 300.4 222 70.3
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.9e-79 300.4 222 72.5
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 3.2e-79 299.7 222 73.4
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.6e-78 297.4 224 72.3
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 1.6e-78 297.4 274 64.6
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.7e-78 296.6 222 70.7
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.5e-78 296.2 222 70.7
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 6.0e-78 295.4 271 63.5
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.0e-77 294.7 190 78.9
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.3e-77 293.5 410 66.3
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 2.3e-77 293.5 219 73.1
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 5.1e-77 292.4 240 67.5
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.1e-76 291.2 216 74.1
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.1e-76 291.2 216 74.1
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 2.5e-76 290.0 190 78.4
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 4.3e-76 289.3 222 72.1
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 5.6e-76 288.9 188 78.2
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 7.3e-76 288.5 222 72.1
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 2.1e-75 287.0 222 69.4
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.4e-74 283.5 190 76.3
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 3.1e-74 283.1 190 75.8
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 5.3e-74 282.3 190 75.3
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 5.3e-74 282.3 221 69.7
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 5.3e-74 282.3 221 69.7
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 5.3e-74 282.3 221 69.7
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 6.9e-74 282.0 219 70.3
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 6.9e-74 282.0 190 75.8
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 2.0e-73 280.4 415 55.4
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 4.5e-73 279.3 222 68.5
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 4.5e-73 279.3 397 50.1
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 4.5e-73 279.3 190 73.2
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 1.3e-72 277.7 190 72.6
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.3e-72 277.7 190 72.6
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.7e-72 277.3 190 72.6
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 2.2e-72 276.9 190 72.6
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 2.2e-72 276.9 190 72.6
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 2.2e-72 276.9 190 73.7
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 4.9e-72 275.8 190 73.7
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 8.4e-72 275.0 190 73.7
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.4e-71 274.2 190 73.2
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.9e-71 273.9 222 67.6
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 9.3e-71 271.6 190 72.1
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 1.3e-69 267.7 190 71.1
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 3.9e-69 266.2 190 70.5
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.9e-68 263.8 213 64.8
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.5e-68 263.5 214 66.4
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 5.6e-68 262.3 364 73.9
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 7.4e-68 261.9 190 69.5
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.6e-67 260.8 197 68.5
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 2.0e-65 253.8 211 63.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 9.9e-65 251.5 218 61.5
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 2.9e-64 250.0 266 54.5
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 2.9e-64 250.0 190 66.3
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 6.4e-64 248.8 167 74.9
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 9.3e-63 245.0 167 74.9
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 9.3e-63 245.0 401 41.6
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 2.3e-61 240.4 186 66.1
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 3.9e-61 239.6 200 64.5
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 1.5e-57 227.6 211 53.6
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 5.9e-49 199.1 224 54.9
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 1.6e-46 191.0 126 78.6
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 1.5e-44 184.5 124 72.6
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 5.7e-44 182.6 185 48.6
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 5.7e-44 182.6 192 50.0
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.7e-38 163.7 150 59.3
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 2.6e-36 157.1 184 46.7
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 8.0e-30 135.6 84 85.7
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 5.3e-26 122.9 90 67.8
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 1.2e-25 121.7 97 68.0
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.5e-25 120.2 70 80.0
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.5e-25 120.2 70 80.0
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.0e-21 108.6 94 62.8
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 5.5e-15 86.3 50 80.0
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 3.0e-13 80.5 69 60.9
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 1.4e-10 71.6 42 81.0
ATR0693G087 Amborella trichopoda HOM05D005421 ORTHO05D026565 1.8e-10 71.2 55 80.0
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 7.7e-09 65.9 53 66.0
RcHm_v2.0_Chr7g0209411 Rosa chinensis HOM05D005421 ORTHO05D347087 4.2e-07 60.1 143 32.2
CSS0031576 Camellia sinensis var. sinensis HOM05D032561 ORTHO05D030857 5.5e-07 59.7 46 71.7
CSS0038730 Camellia sinensis var. sinensis HOM05D032561 ORTHO05D030857 5.5e-07 59.7 46 71.7
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 2.8e-06 57.4 28 92.9
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 8.0e-06 55.8 27 92.6


User provided reference genes

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