Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25227 Nelumbo nucifera HOM05D002578 ORTHO05D002698 2.8e-61 238.4 121 100.0
Nn070s42374 Nelumbo nucifera HOM05D002578 ORTHO05D002698 3.3e-54 214.9 131 88.5
Sed0005264 Sechium edule HOM05D002578 ORTHO05D002698 3.2e-41 171.8 130 70.8
Hma1.2p1_0192F.1_g083740 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 8.8e-39 163.7 119 73.1
Hma1.2p1_0247F.1_g101834 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 8.8e-39 163.7 119 73.1
Hma1.2p1_0298F.1_g117736 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 8.8e-39 163.7 119 73.1
Hma1.2p1_0818F.1_g223301 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 8.8e-39 163.7 119 73.1
PSO548G0035 Papaver somniferum HOM05D002578 ORTHO05D002698 7.5e-38 160.6 122 71.3
Oeu060398.1 Olea europaea HOM05D002578 ORTHO05D002698 9.8e-38 160.2 122 69.7
HanXRQChr00c0593g0576411 Helianthus annuus HOM05D002578 ORTHO05D002698 1.3e-37 159.8 117 74.4
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-37 159.8 117 74.4
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-37 159.8 117 74.4
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-37 159.8 117 74.4
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 1.3e-37 159.8 117 74.4
HanXRQChr11g0327011 Helianthus annuus HOM05D002578 ORTHO05D002698 1.3e-37 159.8 117 74.4
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-37 159.8 117 74.4
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-37 159.8 117 74.4
PGR111G0094 Punica granatum HOM05D002578 ORTHO05D002698 1.3e-37 159.8 125 68.8
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 3.7e-37 158.3 117 73.5
Migut.D01326 Erythranthe guttata HOM05D002578 ORTHO05D002698 4.9e-37 157.9 111 76.6
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 6.3e-37 157.5 120 70.8
Gohir.1Z049734 Gossypium hirsutum HOM05D002578 ORTHO05D002698 8.3e-37 157.1 122 71.3
Gorai.009G325200 Gossypium raimondii HOM05D002578 ORTHO05D002698 8.3e-37 157.1 122 71.3
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.1e-36 156.8 120 70.0
ATCG00810 Arabidopsis thaliana HOM05D002578 ORTHO05D002698 1.4e-36 156.4 131 64.9
Hma1.2p1_0104F.1_g050125 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 1.4e-36 156.4 108 74.1
BolSC35t60673H Brassica oleracea HOM05D002578 ORTHO05D002698 1.8e-36 156.0 131 64.9
AL2G20520 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 5.4e-36 154.5 131 64.1
AL2G21760 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 5.4e-36 154.5 131 64.1
C09p40110 Brassica napus HOM05D002578 ORTHO05D002698 9.2e-36 153.7 131 64.1
BolC9t56906H Brassica oleracea HOM05D002578 ORTHO05D002698 9.2e-36 153.7 131 64.1
Gohir.D01G102177 Gossypium hirsutum HOM05D002578 ORTHO05D002698 1.2e-35 153.3 122 69.7
HanXRQChr05g0152531 Helianthus annuus HOM05D002578 ORTHO05D002698 1.6e-35 152.9 110 73.6
AL1G45060 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 2.0e-35 152.5 131 63.4
Gohir.1Z049366 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.0e-35 152.5 122 68.9
CAN.G114.8 Capsicum annuum HOM05D002578 ORTHO05D002698 2.7e-35 152.1 120 68.3
Gohir.A12G024432 Gossypium hirsutum HOM05D002578 ORTHO05D002698 3.5e-35 151.8 122 69.7
Oeu054717.1 Olea europaea HOM05D002578 ORTHO05D002698 3.5e-35 151.8 121 66.9
DCAR_032525 Daucus carota HOM05D002578 ORTHO05D002698 4.5e-35 151.4 125 68.0
RcHm_v2.0_CPg0501841 Rosa chinensis HOM05D002578 ORTHO05D002698 1.0e-34 150.2 124 66.1
RcHm_v2.0_Chr1g0329561 Rosa chinensis HOM05D002578 ORTHO05D002698 2.5e-33 145.6 124 64.5
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 7.3e-33 144.1 104 75.0
Lj2P1239T81 Lonicera japonica HOM05D002578 ORTHO05D002698 1.2e-32 143.3 110 68.2
Lju5009P0T59 Lonicera japonica HOM05D002578 ORTHO05D002698 1.2e-32 143.3 110 68.2
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 1.6e-32 142.9 127 65.4
Lsat_1_v5_gn_5_50481 Lactuca sativa HOM05D002578 ORTHO05D002698 3.6e-32 141.7 107 71.0
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 4.7e-32 141.4 122 61.5
SGA_v2.0_scaffold907G53717 Striga asiatica HOM05D002578 ORTHO05D002698 8.0e-32 140.6 124 62.1
BolSC29t60613H Brassica oleracea HOM05D002578 ORTHO05D002698 4.0e-31 138.3 110 66.4
Ciclev10005921m.g Citrus clementina HOM05D002578 ORTHO05D002698 4.0e-31 138.3 121 60.3
Lj2C1234G17 Lonicera japonica HOM05D002578 ORTHO05D002698 8.9e-31 137.1 104 71.2
BolC7t41707H Brassica oleracea HOM05D002578 ORTHO05D002698 2.0e-30 136.0 110 65.5
Nitab4.5_0004430g0050 Nicotiana tabacum HOM05D002578 ORTHO05D002698 2.0e-30 136.0 119 63.0
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 2.6e-30 135.6 107 69.2
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.9e-29 132.1 83 77.1
Eucgr.A01255 Eucalyptus grandis HOM05D002578 ORTHO05D002698 2.4e-28 129.0 79 79.7
QL02p048586 Quercus lobata HOM05D002578 ORTHO05D002698 2.4e-28 129.0 117 59.8
FAN09G4709 Fragaria x ananassa HOM05D002578 ORTHO05D002698 3.2e-28 128.6 124 61.3
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 7.0e-28 127.5 105 66.7
Glyma.05G001100 Glycine max HOM05D002578 ORTHO05D002698 9.2e-28 127.1 113 59.3
Glyma.19G001100 Glycine max HOM05D002578 ORTHO05D002698 9.2e-28 127.1 113 59.3
VMungo0464G0334 Vigna mungo HOM05D002578 ORTHO05D002698 2.0e-27 125.9 117 57.3
Lj2g0018876 Lotus japonicus HOM05D002578 ORTHO05D002698 3.5e-27 125.2 107 59.8
CiPaw.03G067300 Carya illinoinensis HOM05D002578 ORTHO05D002698 5.9e-27 124.4 117 56.4
Cfa007862 Carpinus fangiana HOM05D002578 ORTHO05D002698 1.7e-26 122.9 118 54.2
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 3.9e-26 121.7 98 66.3
Gohir.A04G116550 Gossypium hirsutum HOM05D002578 ORTHO05D002698 8.6e-26 120.6 79 73.4
TPR.G22135 Trifolium pratense HOM05D002578 ORTHO05D002698 8.6e-26 120.6 107 58.9
Phvul.004G001400 Phaseolus vulgaris HOM05D002578 ORTHO05D002698 1.1e-25 120.2 113 56.6
Ca_04123_v3 Cicer arietinum L. HOM05D002578 ORTHO05D002698 1.9e-25 119.4 107 57.9
Lsat_1_v5_gn_5_168080 Lactuca sativa HOM05D002578 ORTHO05D002698 1.9e-25 119.4 106 63.2
HPP92_007212 Vanilla planifolia HOM05D002578 ORTHO05D002698 1.9e-25 119.4 113 58.4
arahy.Tifrunner.gnm1.ann1.900JYR Arachis hypogaea HOM05D002578 ORTHO05D002698 3.3e-25 118.6 107 57.9
arahy.Tifrunner.gnm1.ann1.MT7PBJ Arachis hypogaea HOM05D002578 ORTHO05D002698 3.3e-25 118.6 107 57.9
Lalb_Chr03g0038431 Lupinus albus HOM05D002578 ORTHO05D002698 4.3e-25 118.2 107 57.0
Medtr7g100410 Medicago truncatula HOM05D002578 ORTHO05D002698 7.3e-25 117.5 107 58.9
Lj1g0008959 Lotus japonicus HOM05D002578 ORTHO05D002698 1.6e-24 116.3 108 56.5
HanXRQChr00c0349g0573961 Helianthus annuus HOM05D002578 ORTHO05D002698 6.2e-24 114.4 76 78.9
HanXRQChr16g0503671 Helianthus annuus HOM05D002578 ORTHO05D002698 1.0e-23 113.6 91 70.3
Psat1g052200 Pisum sativum HOM05D002578 ORTHO05D002698 1.0e-23 113.6 118 50.0
Peaxi162Scf00362g00547 Petunia axillaris HOM05D002578 ORTHO05D002698 6.8e-23 110.9 83 73.5
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 8.9e-23 110.5 100 61.0
HanXRQChr16g0500141 Helianthus annuus HOM05D002578 ORTHO05D002698 7.5e-22 107.5 81 75.3
Duzib275G0002 Durio zibethinus HOM05D002578 ORTHO05D002698 1.9e-20 102.8 106 58.5
Os12g0488300 Oryza sativa ssp. japonica HOM05D002578 ORTHO05D002698 1.9e-20 102.8 122 50.8
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 3.2e-20 102.1 98 57.1
CiPaw.11G073000 Carya illinoinensis HOM05D002578 ORTHO05D002698 9.2e-20 100.5 83 63.9
Nitab4.5_0004697g0040 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.2e-19 100.1 84 66.7
Zm00001eb437150 Zea mays HOM05D002578 ORTHO05D002698 1.2e-19 100.1 107 51.4
HanXRQChr13g0402911 Helianthus annuus HOM05D002578 ORTHO05D002698 2.7e-19 99.0 68 75.0
Zm00001eb442200 Zea mays HOM05D002578 ORTHO05D002698 1.0e-18 97.1 96 55.2
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.3e-18 96.7 121 46.3
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.3e-18 96.7 121 46.3
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.3e-18 96.7 121 46.3
MCO09G075 Micromonas commoda HOM05D002578 ORTHO05D002698 8.1e-16 87.4 100 42.0
SMO086G0008 Selaginella moellendorffii HOM05D002578 ORTHO05D002698 1.2e-14 83.6 107 43.0
Nitab4.5_0000382g0100 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.5e-14 83.2 75 62.7
CARHR141570 Cardamine hirsuta HOM05D002578 ORTHO05D002698 7.1e-12 74.3 54 66.7
Cre13.g580850 Chlamydomonas reinhardtii HOM05D002578 ORTHO05D002698 9.2e-12 73.9 83 43.4
Ah.10g027310 Amaranthus hybridus HOM05D002578 ORTHO05D002698 1.6e-11 73.2 74 56.8
BraSC143t45639Z Brassica rapa HOM05D002578 ORTHO05D002698 2.1e-11 72.8 113 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3244 Anthoceros agrestis HOM05D003997 ORTHO05D002698 3.5e-11 72.0 79 44.3
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.3e-10 70.1 46 73.9
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.7e-10 69.7 62 51.6
ClCG04G000500 Citrullus lanatus HOM05D002578 ORTHO05D002698 1.6e-08 63.2 56 66.1
Phvul.008G070600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 2.8e-08 62.4 87 40.2
Glyma.09G264400 Glycine max HOM05D003997 ORTHO05D002698 3.6e-08 62.0 87 37.9
Glyma.18G227500 Glycine max HOM05D003997 ORTHO05D002698 3.6e-08 62.0 87 37.9
FvH4_6g20730 Fragaria vesca HOM05D003997 ORTHO05D002698 4.7e-08 61.6 86 36.0
FAN02G0475 Fragaria x ananassa HOM05D003997 ORTHO05D002698 4.7e-08 61.6 86 36.0
FAN14G5955 Fragaria x ananassa HOM05D003997 ORTHO05D002698 4.7e-08 61.6 86 36.0
SEGI_26891 Sequoiadendron giganteum HOM05D003997 ORTHO05D002698 6.2e-08 61.2 88 35.2
Medtr1g040020 Medicago truncatula HOM05D003997 ORTHO05D002698 8.1e-08 60.8 117 34.2
Phvul.008G070900 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 8.1e-08 60.8 116 34.5
FAN05G3201 Fragaria x ananassa HOM05D003997 ORTHO05D002698 1.1e-07 60.5 86 34.9
SHI07013 Sapria himalayana HOM05D003997 ORTHO05D002698 1.4e-07 60.1 88 36.4
RcHm_v2.0_Chr6g0286361 Rosa chinensis HOM05D002578 ORTHO05D002698 3.1e-07 58.9 64 54.7
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.1e-07 58.9 99 43.4
HPP92_017694 Vanilla planifolia HOM05D003997 ORTHO05D002698 5.2e-07 58.2 113 28.3
CDE02G4432 Ceratophyllum demersum HOM05D003997 ORTHO05D002698 6.8e-07 57.8 85 32.9
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 6.8e-07 57.8 78 43.6
Zm00001eb095190 Zea mays HOM05D003997 ORTHO05D002698 8.9e-07 57.4 113 31.9
Rhsim03G0061700 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.2e-06 57.0 86 33.7
Rhsim03G0061200 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.5e-06 56.6 86 33.7
SalBow5G1795 Salvia bowleyana HOM05D003997 ORTHO05D002698 1.5e-06 56.6 86 33.7
Hma1.2p1_2082F.1_g313570 Hydrangea macrophylla HOM05D003997 ORTHO05D002698 2.6e-06 55.8 86 33.7
Phvul.008G071600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 2.6e-06 55.8 76 39.5
TPR.G30221 Trifolium pratense HOM05D003997 ORTHO05D002698 3.4e-06 55.5 87 32.2
BolC2t12279H Brassica oleracea HOM05D003997 ORTHO05D002698 4.4e-06 55.1 120 28.3
Duzib128G1254 Durio zibethinus HOM05D003997 ORTHO05D002698 4.4e-06 55.1 123 28.5
Lalb_Chr16g0386841 Lupinus albus HOM05D003997 ORTHO05D002698 4.4e-06 55.1 87 35.6
BcaC03g18154 Brassica carinata HOM05D003997 ORTHO05D002698 5.8e-06 54.7 120 28.3
BcaC03g18159 Brassica carinata HOM05D003997 ORTHO05D002698 5.8e-06 54.7 120 28.3
MBI19_g30302_MAGBIO Magnolia biondii HOM05D003997 ORTHO05D002698 5.8e-06 54.7 86 33.7
Os01g0616500 Oryza sativa ssp. japonica HOM05D003997 ORTHO05D002698 5.8e-06 54.7 113 30.1
Pp3c8_16210 Physcomitrium patens HOM05D003997 ORTHO05D002698 5.8e-06 54.7 86 32.6
COL.COLO4_29520 Corchorus olitorius HOM05D003997 ORTHO05D002698 7.6e-06 54.3 117 29.9
BcaB02g09651 Brassica carinata HOM05D003997 ORTHO05D002698 9.9e-06 53.9 117 27.4
BcaB07g29840 Brassica carinata HOM05D003997 ORTHO05D002698 9.9e-06 53.9 117 27.4
BcaC01g02477 Brassica carinata HOM05D003997 ORTHO05D002698 9.9e-06 53.9 117 27.4
A02p42340 Brassica napus HOM05D003997 ORTHO05D002698 9.9e-06 53.9 118 28.8
C02p62220 Brassica napus HOM05D003997 ORTHO05D002698 9.9e-06 53.9 118 28.8
C03p64380 Brassica napus HOM05D003997 ORTHO05D002698 9.9e-06 53.9 117 27.4
BraA02t09164Z Brassica rapa HOM05D003997 ORTHO05D002698 9.9e-06 53.9 118 28.8
BraA06t25868Z Brassica rapa HOM05D003997 ORTHO05D002698 9.9e-06 53.9 117 27.4
Peaxi162Scf00002g03712 Petunia axillaris HOM05D003997 ORTHO05D002698 9.9e-06 53.9 86 32.6
RhsimUnG0113000 Rhododendron simsii HOM05D003997 ORTHO05D002698 9.9e-06 53.9 86 32.6


User provided reference genes

Program Settings