Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25030 Nelumbo nucifera HOM05D002407 ORTHO05D002476 3.3e-29 131.7 108 100.0
Nn4g26275 Nelumbo nucifera HOM05D002407 ORTHO05D002476 9.1e-19 97.1 52 90.4
Nn1g02265 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.0e-17 93.6 52 86.5
TAR636G3152 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.3e-12 76.6 49 75.5
Glyma.10G249300 Glycine max HOM05D002407 ORTHO05D002476 8.2e-12 73.9 51 76.5
Glyma.20G144400 Glycine max HOM05D002407 ORTHO05D002476 8.2e-12 73.9 51 76.5
TAR633G0416 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.4e-11 73.2 49 73.5
Ca_10916_v3 Cicer arietinum L. HOM05D002407 ORTHO05D002476 1.8e-11 72.8 50 78.0
Lj5g0016334 Lotus japonicus HOM05D002407 ORTHO05D002476 1.8e-11 72.8 50 78.0
CiPaw.01G164400 Carya illinoinensis HOM05D002407 ORTHO05D002476 2.4e-11 72.4 50 76.0
GSVIVG01017938001 Vitis vinifera HOM05D002407 ORTHO05D002476 2.4e-11 72.4 52 71.2
Haze_00920 Corylus avellana HOM05D002407 ORTHO05D002476 4.1e-11 71.6 52 75.0
TAR362G1005 Trochodendron aralioides HOM05D002407 ORTHO05D002476 5.3e-11 71.2 45 80.0
MBI04_g44890_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 7.0e-11 70.9 55 72.7
Phvul.007G055400 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 7.0e-11 70.9 51 74.5
VMungo0720G1158 Vigna mungo HOM05D002407 ORTHO05D002476 7.0e-11 70.9 51 74.5
CiPaw.02G096000 Carya illinoinensis HOM05D002407 ORTHO05D002476 9.1e-11 70.5 52 73.1
Psat6g208200 Pisum sativum HOM05D002407 ORTHO05D002476 2.6e-10 68.9 49 75.5
Nn1g01515 Nelumbo nucifera HOM05D002407 ORTHO05D002476 4.5e-10 68.2 33 100.0
ClCG06G006080 Citrullus lanatus HOM05D002407 ORTHO05D002476 7.7e-10 67.4 53 67.9
MELO3C014484.2 Cucumis melo HOM05D002407 ORTHO05D002476 7.7e-10 67.4 53 67.9
CsaV3_6G038190 Cucumis sativus L. HOM05D002407 ORTHO05D002476 7.7e-10 67.4 53 67.9
TPR.G5532 Trifolium pratense HOM05D002407 ORTHO05D002476 7.7e-10 67.4 49 71.4
AUR62038105 Chenopodium quinoa HOM05D002407 ORTHO05D002476 1.0e-09 67.0 51 66.7
AUR62038630 Chenopodium quinoa HOM05D002407 ORTHO05D002476 1.0e-09 67.0 51 66.7
Medtr1g104710 Medicago truncatula HOM05D002407 ORTHO05D002476 1.0e-09 67.0 48 75.0
QL06p003139 Quercus lobata HOM05D002407 ORTHO05D002476 1.7e-09 66.2 51 74.5
Sed0021914 Sechium edule HOM05D002407 ORTHO05D002476 2.2e-09 65.9 50 72.0
arahy.Tifrunner.gnm1.ann1.C339P9 Arachis hypogaea HOM05D002407 ORTHO05D002476 2.9e-09 65.5 48 70.8
arahy.Tifrunner.gnm1.ann1.GGU5D9 Arachis hypogaea HOM05D002407 ORTHO05D002476 2.9e-09 65.5 48 70.8
Potri.008G151200 Populus trichocarpa HOM05D002407 ORTHO05D002476 2.9e-09 65.5 55 65.5
Sabra08G0115000 Salix brachista HOM05D002407 ORTHO05D002476 2.9e-09 65.5 55 65.5
Dinv38434 Davidia involucrata HOM05D002407 ORTHO05D002476 5.0e-09 64.7 53 69.8
Cpa.g.sc58.130 Carica papaya HOM05D002407 ORTHO05D002476 6.5e-09 64.3 48 70.8
Dinv44512 Davidia involucrata HOM05D002407 ORTHO05D002476 1.1e-08 63.5 53 71.7
Potri.010G089700 Populus trichocarpa HOM05D002407 ORTHO05D002476 1.1e-08 63.5 58 65.5
Hund12142 Selenicereus undatus HOM05D002407 ORTHO05D002476 7.2e-08 60.8 58 63.8
Sabra10G0053600 Salix brachista HOM05D002407 ORTHO05D002476 9.4e-08 60.5 57 63.2
Solyc09g075830.3 Solanum lycopersicum HOM05D002407 ORTHO05D002476 1.6e-07 59.7 55 63.6
Sopen09g030650 Solanum pennellii HOM05D002407 ORTHO05D002476 1.6e-07 59.7 55 63.6
Nn2g10699 Nelumbo nucifera HOM05D002407 ORTHO05D002476 2.1e-07 59.3 32 87.5
THA.LOC104803022 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 2.1e-07 59.3 69 52.2
MSTRG.24745 Avicennia marina HOM05D002407 ORTHO05D002476 2.7e-07 58.9 51 68.6
Cc03_g03560 Coffea canephora HOM05D002407 ORTHO05D002476 2.7e-07 58.9 53 66.0
Sc13g0004300 Simmondsia chinensis HOM05D002407 ORTHO05D002476 6.1e-07 57.8 63 54.0
Carub.0003s2254 Capsella rubella HOM05D002407 ORTHO05D002476 8.0e-07 57.4 63 57.1
Gohir.A10G117100 Gossypium hirsutum HOM05D002407 ORTHO05D002476 8.0e-07 57.4 66 57.6
AL3G36660 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 1.0e-06 57.0 64 56.2
PGSC0003DMG400031808 Solanum tuberosum HOM05D002407 ORTHO05D002476 1.0e-06 57.0 52 65.4
THA.LOC104808535 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 1.0e-06 57.0 70 52.9
Aa31LG8G8910 Aethionema arabicum HOM05D002407 ORTHO05D002476 1.4e-06 56.6 64 54.7
Atru.chr5.1448 Acer truncatum HOM05D002407 ORTHO05D002476 2.3e-06 55.8 49 59.2
Carub.0007s2714 Capsella rubella HOM05D002407 ORTHO05D002476 3.0e-06 55.5 58 55.2
PSO210G7189 Papaver somniferum HOM05D002407 ORTHO05D002476 4.0e-06 55.1 42 69.0
PSO832G2586 Papaver somniferum HOM05D002407 ORTHO05D002476 4.0e-06 55.1 42 69.0
AL7G40870 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 5.2e-06 54.7 61 52.5
MSTRG.4019 Avicennia marina HOM05D002407 ORTHO05D002476 5.2e-06 54.7 46 65.2
SalBow2G0563 Salvia bowleyana HOM05D002407 ORTHO05D002476 5.2e-06 54.7 63 58.7
THA.LOC104822274 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 5.2e-06 54.7 65 53.8
Lsat_1_v5_gn_5_148881 Lactuca sativa HOM05D002407 ORTHO05D002476 6.7e-06 54.3 59 64.4
Atru.chr4.2502 Acer truncatum HOM05D002407 ORTHO05D002476 8.8e-06 53.9 52 59.6
Ah.13g073870 Amaranthus hybridus HOM05D002407 ORTHO05D002476 8.8e-06 53.9 50 58.0
Glyma.02G146900 Glycine max HOM05D002407 ORTHO05D002476 8.8e-06 53.9 49 61.2


User provided reference genes

Program Settings