Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24903 Nelumbo nucifera HOM05D003897 ORTHO05D275719 1.1e-56 223.0 109 100.0
Nn8g38739 Nelumbo nucifera HOM05D003897 ORTHO05D005095 7.8e-18 94.0 79 69.6
Nn8g38737 Nelumbo nucifera HOM05D003897 ORTHO05D005095 1.2e-13 80.1 73 57.5
Nn3g20693 Nelumbo nucifera HOM05D003897 ORTHO05D005095 3.9e-09 65.1 93 49.5
Nn4g26537 Nelumbo nucifera HOM05D003897 ORTHO05D005095 1.1e-08 63.5 93 47.3
Ciclev10028849m.g Citrus clementina HOM05D003897 ORTHO05D005095 3.3e-08 62.0 93 48.4
TWI79G1683 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 5.6e-08 61.2 93 47.3
ClCG11G007460 Citrullus lanatus HOM05D003897 ORTHO05D005095 7.3e-08 60.8 93 47.3
MELO3C008589.2 Cucumis melo HOM05D003897 ORTHO05D005095 7.3e-08 60.8 93 47.3
CsaV3_2G010370 Cucumis sativus L. HOM05D003897 ORTHO05D005095 7.3e-08 60.8 93 47.3
TWI31G0147 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 9.5e-08 60.5 93 47.3
FAN24G2661 Fragaria x ananassa HOM05D003897 ORTHO05D005095 1.2e-07 60.1 91 42.9
MD05G1087400 Malus domestica HOM05D003897 ORTHO05D005095 1.2e-07 60.1 93 45.2
MD10G1096200 Malus domestica HOM05D003897 ORTHO05D005095 1.2e-07 60.1 93 45.2
Prupe.8G132000 Prunus persica HOM05D003897 ORTHO05D005095 1.2e-07 60.1 93 45.2
Mapoly0027s0025 Marchantia polymorpha HOM05D003897 ORTHO05D005095 2.1e-07 59.3 93 44.1
Nn8g40129 Nelumbo nucifera HOM05D003897 ORTHO05D005095 2.1e-07 59.3 55 56.4
Phvul.002G097400 Phaseolus vulgaris HOM05D003897 ORTHO05D005095 2.8e-07 58.9 93 47.3
TAR628G0435 Trochodendron aralioides HOM05D003897 ORTHO05D005095 2.8e-07 58.9 93 46.2
VMungo0251G0352 Vigna mungo HOM05D003897 ORTHO05D005095 2.8e-07 58.9 93 47.3
Aqoxy6G02891 Aquilegia oxysepala HOM05D003897 ORTHO05D005095 3.6e-07 58.5 130 36.2
Sed0005062 Sechium edule HOM05D003897 ORTHO05D005095 3.6e-07 58.5 93 46.2
FvH4_2g05450 Fragaria vesca HOM05D003897 ORTHO05D005095 6.2e-07 57.8 93 43.0
FAN20G3196 Fragaria x ananassa HOM05D003897 ORTHO05D005095 6.2e-07 57.8 93 43.0
FAN27G3036 Fragaria x ananassa HOM05D003897 ORTHO05D005095 6.2e-07 57.8 93 43.0
RcHm_v2.0_Chr6g0255731 Rosa chinensis HOM05D003897 ORTHO05D005095 6.2e-07 57.8 93 43.0
FAN15G0415 Fragaria x ananassa HOM05D003897 ORTHO05D005095 8.0e-07 57.4 93 43.0
Cc02_g19130 Coffea canephora HOM05D003897 ORTHO05D005095 1.1e-06 57.0 93 45.2
Gohir.A04G119600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.4e-06 56.6 93 46.2
Gohir.D04G161200 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.4e-06 56.6 93 46.2
Gorai.012G149200 Gossypium raimondii HOM05D003897 ORTHO05D005095 1.4e-06 56.6 93 46.2
CDE04G0824 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 1.8e-06 56.2 92 44.6
Glyma.07G220900 Glycine max HOM05D003897 ORTHO05D005095 1.8e-06 56.2 92 44.6
Glyma.20G019200 Glycine max HOM05D003897 ORTHO05D005095 1.8e-06 56.2 92 44.6
Duzib248G1300 Durio zibethinus HOM05D003897 ORTHO05D005095 2.3e-06 55.8 93 45.2
Thecc.02G106100 Theobroma cacao HOM05D003897 ORTHO05D005095 2.3e-06 55.8 93 45.2
Actinidia27966 Actinidia chinensis HOM05D003897 ORTHO05D005095 3.1e-06 55.5 93 45.2
AT2G15430 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 3.1e-06 55.5 92 43.5
CSS0022988 Camellia sinensis var. sinensis HOM05D003897 ORTHO05D005095 3.1e-06 55.5 93 45.2
Carub.0003s2927 Capsella rubella HOM05D003897 ORTHO05D005095 3.1e-06 55.5 92 43.5
CBR_g49328 Chara braunii HOM05D003897 ORTHO05D005095 3.1e-06 55.5 92 44.6
Gohir.A12G022600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 3.1e-06 55.5 93 45.2
Gohir.D12G023000 Gossypium hirsutum HOM05D003897 ORTHO05D005095 3.1e-06 55.5 93 45.2
Gorai.008G023500 Gossypium raimondii HOM05D003897 ORTHO05D005095 3.1e-06 55.5 93 45.2
HanXRQChr03g0070231 Helianthus annuus HOM05D003897 ORTHO05D005095 3.1e-06 55.5 93 45.2
HanXRQChr16g0530591 Helianthus annuus HOM05D003897 ORTHO05D005095 3.1e-06 55.5 93 45.2
Hma1.2p1_0796F.1_g219060 Hydrangea macrophylla HOM05D003897 ORTHO05D005095 3.1e-06 55.5 93 45.2
Lsat_1_v5_gn_9_111421 Lactuca sativa HOM05D003897 ORTHO05D005095 3.1e-06 55.5 93 45.2
Cfa004562 Carpinus fangiana HOM05D003897 ORTHO05D005095 4.0e-06 55.1 93 44.1
Haze_10156 Corylus avellana HOM05D003897 ORTHO05D005095 4.0e-06 55.1 93 44.1
Eucgr.G01370 Eucalyptus grandis HOM05D003897 ORTHO05D005095 4.0e-06 55.1 93 44.1
Thhalv10022739m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 4.0e-06 55.1 100 40.0
QL11p034241 Quercus lobata HOM05D003897 ORTHO05D005095 4.0e-06 55.1 93 44.1
Rhsim05G0087400 Rhododendron simsii HOM05D003897 ORTHO05D005095 4.0e-06 55.1 93 44.1
RhsimUnG0060800 Rhododendron simsii HOM05D003897 ORTHO05D005095 4.0e-06 55.1 93 44.1
vmacro19519 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 4.0e-06 55.1 93 44.1
CAN.G184.18 Capsicum annuum HOM05D003897 ORTHO05D005095 5.2e-06 54.7 93 45.2
Manes.07G075381 Manihot esculenta HOM05D003897 ORTHO05D005095 5.2e-06 54.7 93 44.1
Nitab4.5_0000027g0450 Nicotiana tabacum HOM05D003897 ORTHO05D005095 5.2e-06 54.7 93 45.2
Nitab4.5_0010998g0010 Nicotiana tabacum HOM05D003897 ORTHO05D005095 5.2e-06 54.7 93 45.2
Solyc05g010300.4 Solanum lycopersicum HOM05D003897 ORTHO05D005095 5.2e-06 54.7 111 38.7
Sopen05g006070 Solanum pennellii HOM05D003897 ORTHO05D005095 5.2e-06 54.7 111 38.7
AL3G47150 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 6.8e-06 54.3 92 42.4
MSTRG.27740 Avicennia marina HOM05D003897 ORTHO05D005095 6.8e-06 54.3 93 44.1
BcaB03g16292 Brassica carinata HOM05D003897 ORTHO05D005095 6.8e-06 54.3 92 42.4
BcaC06g36057 Brassica carinata HOM05D003897 ORTHO05D005095 6.8e-06 54.3 92 42.4
A07p05280 Brassica napus HOM05D003897 ORTHO05D005095 6.8e-06 54.3 92 42.4
C07p08400 Brassica napus HOM05D003897 ORTHO05D005095 6.8e-06 54.3 92 42.4
BolC7t41254H Brassica oleracea HOM05D003897 ORTHO05D005095 6.8e-06 54.3 92 42.4
BraA07t28320Z Brassica rapa HOM05D003897 ORTHO05D005095 6.8e-06 54.3 92 42.4
COL.COLO4_32614 Corchorus olitorius HOM05D003897 ORTHO05D005095 6.8e-06 54.3 92 44.6
ECA240G4340 Erigeron canadensis HOM05D003897 ORTHO05D005095 6.8e-06 54.3 93 44.1
Manes.10G077334 Manihot esculenta HOM05D003897 ORTHO05D005095 6.8e-06 54.3 93 44.1
Oeu010392.2 Olea europaea HOM05D003897 ORTHO05D005095 6.8e-06 54.3 93 44.1
Oeu028249.2 Olea europaea HOM05D003897 ORTHO05D005095 6.8e-06 54.3 93 44.1
PGR042G2465 Punica granatum HOM05D003897 ORTHO05D005095 6.8e-06 54.3 93 45.2
Sp3g28700 Schrenkiella parvula HOM05D003897 ORTHO05D005095 6.8e-06 54.3 92 42.4
SGA_v2.0_scaffold13G06605 Striga asiatica HOM05D003897 ORTHO05D005095 6.8e-06 54.3 93 44.1
SGA_v2.0_scaffold393G50705 Striga asiatica HOM05D003897 ORTHO05D005095 6.8e-06 54.3 93 44.1
Ah.01g018040 Amaranthus hybridus HOM05D003897 ORTHO05D005095 8.9e-06 53.9 92 44.6
CiPaw.06G170300 Carya illinoinensis HOM05D003897 ORTHO05D005095 8.9e-06 53.9 93 43.0
Dinv15751 Davidia involucrata HOM05D003897 ORTHO05D005095 8.9e-06 53.9 93 43.0
Potri.009G097600 Populus trichocarpa HOM05D003897 ORTHO05D005095 8.9e-06 53.9 93 43.0
Sabra09G0074900 Salix brachista HOM05D003897 ORTHO05D005095 8.9e-06 53.9 93 43.0


User provided reference genes

Program Settings