Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 0.0e+00 1776.9 895 100.0
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 0.0e+00 1424.8 833 87.3
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 2.1e-310 1068.9 839 67.2
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 5.2e-269 931.4 834 59.8
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 1.7e-267 926.4 863 57.4
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 9.1e-266 920.6 838 58.2
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 4.2e-263 911.8 804 59.6
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 1.5e-260 903.3 859 57.2
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 1.7e-259 899.8 809 58.2
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 1.4e-258 896.7 811 58.4
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 9.2e-258 894.0 803 57.9
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 5.0e-256 888.3 849 56.7
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 3.3e-255 885.6 837 57.2
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 1.6e-254 883.2 803 57.8
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 8.0e-254 880.9 828 56.3
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 1.4e-253 880.2 820 57.6
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 7.5e-252 874.4 842 57.5
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 2.2e-251 872.8 826 55.6
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 1.1e-250 870.5 840 56.7
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.1e-250 870.5 801 56.1
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 6.0e-249 864.8 803 55.5
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 2.3e-248 862.8 859 54.8
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 1.1e-247 860.5 817 56.1
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 1.9e-247 859.8 814 55.4
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 2.5e-247 859.4 802 57.6
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 4.3e-247 858.6 841 56.0
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 4.3e-247 858.6 841 54.6
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 6.2e-246 854.7 827 57.1
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 1.4e-245 853.6 806 55.8
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.8e-245 853.2 821 55.3
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.3e-245 852.8 811 57.8
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 3.1e-245 852.4 805 55.3
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 4.0e-245 852.0 839 55.4
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.5e-244 850.1 796 54.6
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 2.0e-244 849.7 806 56.1
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 1.1e-242 844.0 866 54.4
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.1e-242 844.0 848 53.9
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.4e-242 843.6 801 55.4
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 2.4e-242 842.8 804 56.3
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 7.0e-242 841.3 801 55.6
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 7.0e-242 841.3 808 55.7
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 3.5e-241 839.0 846 53.1
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 5.1e-240 835.1 797 55.2
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 1.1e-239 833.9 811 56.5
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 1.1e-239 833.9 863 51.4
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.9e-239 833.2 803 55.0
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 3.3e-239 832.4 786 55.9
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 1.2e-238 830.5 817 54.3
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 2.1e-238 829.7 789 54.8
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 8.1e-238 827.8 775 55.2
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 5.2e-237 825.1 849 52.9
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.6e-236 822.8 839 53.9
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.1e-234 817.4 801 55.6
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 1.9e-234 816.6 795 55.7
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.4e-234 816.2 841 53.6
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 4.1e-234 815.5 810 54.1
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 2.1e-233 813.1 798 53.9
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 9.5e-231 804.3 824 53.5
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 9.5e-231 804.3 812 53.6
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 1.5e-228 797.0 801 53.4
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 4.4e-228 795.4 809 51.8
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 6.4e-227 791.6 812 52.7
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 8.4e-227 791.2 828 52.5
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 4.6e-225 785.4 817 53.0
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 6.0e-225 785.0 842 53.0
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 8.7e-224 781.2 804 51.2
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.6e-222 775.8 834 52.4
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.4e-221 773.1 838 51.1
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 4.4e-220 768.8 804 51.4
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 5.8e-220 768.5 657 58.4
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 3.8e-219 765.8 890 50.3
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 8.4e-219 764.6 837 50.4
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 7.1e-218 761.5 822 50.7
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.7e-216 756.9 765 52.5
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 3.9e-216 755.7 832 50.1
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 4.8e-214 748.8 768 53.9
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 1.8e-213 746.9 831 50.8
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 3.1e-213 746.1 813 50.1
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.4e-212 742.7 804 51.2
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 9.9e-212 741.1 832 49.3
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 2.9e-211 739.6 851 47.9
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 2.4e-210 736.5 832 49.3
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 3.2e-210 736.1 839 49.1
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 3.2e-210 736.1 813 50.2
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 4.6e-209 732.3 849 47.9
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 1.8e-208 730.3 824 49.3
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 3.0e-208 729.6 837 48.9
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 6.7e-208 728.4 847 48.6
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 9.6e-207 724.5 887 47.0
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 1.6e-206 723.8 557 64.3
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 4.8e-206 722.2 841 48.5
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 5.1e-200 702.2 863 46.3
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 4.8e-198 695.7 821 49.5
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 7.1e-194 681.8 824 49.9
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 1.9e-191 673.7 802 49.3
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 1.4e-186 657.5 719 52.3
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 3.6e-185 652.9 838 46.5
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 4.6e-185 652.5 508 62.6
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 1.4e-184 651.0 832 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 9.4e-178 628.2 851 42.4
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 5.3e-173 612.5 814 42.8
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.8e-165 587.4 620 53.4
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.2e-164 584.7 822 40.8
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 3.5e-156 556.6 553 54.4
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 1.2e-153 548.1 586 50.7
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.7e-150 537.7 425 64.2
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 2.9e-147 526.9 770 39.6
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 7.2e-146 522.3 414 62.8
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.1e-117 428.7 493 48.5
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 3.8e-110 403.7 427 54.8
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 1.5e-106 391.7 423 48.5
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.5e-103 381.7 494 48.2
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 7.4e-90 336.3 527 36.2
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 9.0e-88 329.3 401 48.4
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 4.5e-79 300.4 441 44.7
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 7.6e-79 299.7 487 43.5
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 4.3e-66 257.3 234 53.0
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.0e-46 193.0 199 48.7
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 2.6e-42 178.3 366 40.2
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.7e-39 168.3 201 53.2
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 5.0e-38 164.1 550 25.3
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 4.1e-32 144.4 187 47.6
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 2.6e-26 125.2 262 33.6
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 3.2e-24 118.2 90 57.8
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 7.8e-23 113.6 80 67.5
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 1.0e-22 113.2 106 52.8
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.5e-21 109.4 213 32.4
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.2e-15 89.7 131 38.9
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 3.9e-14 84.7 151 38.4
Medtr8g088050 Medicago truncatula HOM05D002279 ORTHO05D002644 4.0e-11 74.7 665 21.2
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 4.4e-10 71.2 66 51.5
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 9.2e-08 63.5 316 22.5
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 9.2e-08 63.5 186 36.0
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 1.2e-07 63.2 390 22.1
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 1.6e-07 62.8 315 23.5
TWI53G1345 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 1.6e-07 62.8 545 22.0
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 2.1e-07 62.4 87 40.2
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 2.7e-07 62.0 57 54.4
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 2.7e-07 62.0 377 22.3
Phvul.001G164500 Phaseolus vulgaris HOM05D002279 ORTHO05D002644 3.5e-07 61.6 384 21.9
Cfa024121 Carpinus fangiana HOM05D000285 ORTHO05D001253 4.6e-07 61.2 108 35.2
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 7.8e-07 60.5 69 46.4
arahy.Tifrunner.gnm1.ann1.9ZI5E8 Arachis hypogaea HOM05D002279 ORTHO05D002644 1.0e-06 60.1 593 20.7
arahy.Tifrunner.gnm1.ann1.GB2CGG Arachis hypogaea HOM05D002279 ORTHO05D002644 1.0e-06 60.1 593 20.7
Cfa022020 Carpinus fangiana HOM05D001364 ORTHO05D001316 1.0e-06 60.1 167 28.7
arahy.Tifrunner.gnm1.ann1.CGPP17 Arachis hypogaea HOM05D002279 ORTHO05D002644 1.3e-06 59.7 389 22.1
Glyma.19G168100 Glycine max HOM05D002279 ORTHO05D002644 1.3e-06 59.7 318 22.0
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.3e-06 59.7 316 22.2
MCO03G286 Micromonas commoda HOM05D005319 ORTHO05D006632 1.3e-06 59.7 70 40.0
SEGI_13206 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.7e-06 59.3 76 43.4
arahy.Tifrunner.gnm1.ann1.UG1CCZ Arachis hypogaea HOM05D002279 ORTHO05D002644 3.9e-06 58.2 389 22.1
ECA232G2518 Erigeron canadensis HOM05D006053 ORTHO05D008381 3.9e-06 58.2 89 34.8
Gohir.A11G176700 Gossypium hirsutum HOM05D001543 ORTHO05D001722 3.9e-06 58.2 230 24.8
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.9e-06 58.2 293 22.5
Lj1g0017598 Lotus japonicus HOM05D002279 ORTHO05D002644 3.9e-06 58.2 305 24.6
PRCOL_00005318 Prasinoderma coloniale HOM05D002097 ORTHO05D002248 5.1e-06 57.8 72 38.9
Cpa.g.sc132.10 Carica papaya HOM05D000142 ORTHO05D000124 6.6e-06 57.4 94 38.3
Ca_16277_v3 Cicer arietinum L. HOM05D000142 ORTHO05D000124 6.6e-06 57.4 72 44.4
VMungo1383G2023 Vigna mungo HOM05D002279 ORTHO05D002644 6.6e-06 57.4 380 21.3
Ah.08g218250 Amaranthus hybridus HOM05D002279 ORTHO05D002644 8.6e-06 57.0 294 23.5
CDE06G1310 Ceratophyllum demersum HOM05D000285 ORTHO05D000241 8.6e-06 57.0 82 36.6
DCAR_020066 Daucus carota HOM05D000285 ORTHO05D000241 8.6e-06 57.0 93 31.2
Lsat_1_v5_gn_9_66300 Lactuca sativa HOM05D006053 ORTHO05D008381 8.6e-06 57.0 101 33.7


User provided reference genes

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