Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24311 Nelumbo nucifera HOM05D006919 ORTHO05D008705 3.4e-192 674.9 348 100.0
TAR629G0573 Trochodendron aralioides HOM05D006919 ORTHO05D008705 1.2e-144 516.9 325 78.2
Dinv08205 Davidia involucrata HOM05D006919 ORTHO05D008705 5.1e-140 501.5 318 77.7
Actinidia18895 Actinidia chinensis HOM05D006919 ORTHO05D008705 1.7e-138 496.5 318 77.4
CSS0007871 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 1.5e-136 490.0 320 76.2
CANSAT80G0223 Cannabis sativa HOM05D006919 ORTHO05D008705 3.5e-136 488.8 318 74.8
TWI81G0447 Tripterygium wilfordii HOM05D006919 ORTHO05D008705 2.9e-135 485.7 318 76.7
Potri.015G037600 Populus trichocarpa HOM05D006919 ORTHO05D008705 6.5e-135 484.6 316 74.7
PGR083G2730 Punica granatum HOM05D006919 ORTHO05D008705 1.5e-134 483.4 314 72.0
Phvul.004G150300 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 3.6e-133 478.8 318 75.5
Prupe.5G234100 Prunus persica HOM05D006919 ORTHO05D008705 6.1e-133 478.0 318 75.2
Gohir.A07G060000 Gossypium hirsutum HOM05D006919 ORTHO05D008705 8.0e-133 477.6 313 74.1
GSVIVG01008449001 Vitis vinifera HOM05D006919 ORTHO05D008705 8.0e-133 477.6 318 73.0
Gorai.001G068200 Gossypium raimondii HOM05D006919 ORTHO05D008705 1.0e-132 477.2 313 74.1
Phvul.004G149400 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 1.4e-132 476.9 318 75.5
QL10p029823 Quercus lobata HOM05D006919 ORTHO05D008705 1.4e-132 476.9 317 73.5
Atru.chr9.1714 Acer truncatum HOM05D006919 ORTHO05D008705 1.8e-132 476.5 317 72.2
Aqoxy3G04092 Aquilegia oxysepala HOM05D006919 ORTHO05D008705 1.8e-132 476.5 318 74.2
CiPaw.15G143800 Carya illinoinensis HOM05D006919 ORTHO05D008705 1.8e-132 476.5 318 73.0
Gohir.D07G064700 Gossypium hirsutum HOM05D006919 ORTHO05D008705 5.2e-132 474.9 313 73.8
MD06G1227700 Malus domestica HOM05D006919 ORTHO05D008705 1.5e-131 473.4 318 73.3
Lalb_Chr24g0398171 Lupinus albus HOM05D006919 ORTHO05D008705 7.5e-131 471.1 318 73.0
Glyma.07G102800 Glycine max HOM05D006919 ORTHO05D008705 3.7e-130 468.8 321 74.1
Thecc.03G055400 Theobroma cacao HOM05D006919 ORTHO05D008705 8.2e-130 467.6 313 72.2
Sp1g35490 Schrenkiella parvula HOM05D006919 ORTHO05D008705 1.1e-129 467.2 316 72.5
THA.LOC104820349 Tarenaya hassleriana HOM05D006919 ORTHO05D008705 1.4e-129 466.8 317 73.5
COL.COLO4_04912 Corchorus olitorius HOM05D006919 ORTHO05D008705 2.4e-129 466.1 316 71.8
arahy.Tifrunner.gnm1.ann1.CTKR59 Arachis hypogaea HOM05D006919 ORTHO05D008705 5.3e-129 464.9 318 73.6
AUR62020416 Chenopodium quinoa HOM05D006919 ORTHO05D008705 5.3e-129 464.9 314 72.9
Atru.chr9.1680 Acer truncatum HOM05D006919 ORTHO05D008705 9.1e-129 464.2 324 70.4
BcaB07g33748 Brassica carinata HOM05D006919 ORTHO05D008705 1.6e-128 463.4 316 71.5
C06p03070 Brassica napus HOM05D006919 ORTHO05D008705 2.7e-128 462.6 316 71.8
BolC6t35427H Brassica oleracea HOM05D006919 ORTHO05D008705 2.7e-128 462.6 316 71.8
TPR.G8644 Trifolium pratense HOM05D006919 ORTHO05D008705 2.7e-128 462.6 315 74.0
A06p04410 Brassica napus HOM05D006919 ORTHO05D008705 3.5e-128 462.2 316 71.5
Duzib205G1348 Durio zibethinus HOM05D006919 ORTHO05D008705 3.5e-128 462.2 313 71.9
Medtr6g069620 Medicago truncatula HOM05D006919 ORTHO05D008705 7.7e-128 461.1 315 74.9
Psat1g030800 Pisum sativum HOM05D006919 ORTHO05D008705 1.0e-127 460.7 315 74.3
BraA06t23646Z Brassica rapa HOM05D006919 ORTHO05D008705 2.2e-127 459.5 318 71.4
CAN.G843.52 Capsicum annuum HOM05D006919 ORTHO05D008705 3.8e-127 458.8 318 72.0
Carub.0001s3766 Capsella rubella HOM05D006919 ORTHO05D008705 6.5e-127 458.0 320 70.6
AL1G55190 Arabidopsis lyrata HOM05D006919 ORTHO05D008705 8.5e-127 457.6 320 70.9
RcHm_v2.0_Chr7g0178261 Rosa chinensis HOM05D006919 ORTHO05D008705 1.5e-126 456.8 318 70.4
AT1G48550 Arabidopsis thaliana HOM05D006919 ORTHO05D008705 1.9e-126 456.4 320 70.3
CsaV3_1G007200 Cucumis sativus L. HOM05D006919 ORTHO05D008705 2.5e-126 456.1 315 71.1
Thhalv10012210m.g Eutrema salsugineum HOM05D006919 ORTHO05D008705 3.2e-126 455.7 316 71.5
BcaC08g43045 Brassica carinata HOM05D006919 ORTHO05D008705 5.5e-126 454.9 322 70.2
PSO063G3076 Papaver somniferum HOM05D006919 ORTHO05D008705 1.6e-125 453.4 318 71.1
Aa31LG10G5250 Aethionema arabicum HOM05D006919 ORTHO05D008705 2.1e-125 453.0 317 70.7
Hund01978 Selenicereus undatus HOM05D006919 ORTHO05D008705 4.7e-125 451.8 309 70.9
Sopen03g037620 Solanum pennellii HOM05D006919 ORTHO05D008705 4.7e-125 451.8 318 70.8
Migut.D01529 Erythranthe guttata HOM05D006919 ORTHO05D008705 5.2e-124 448.4 316 70.6
ATR1100G039 Amborella trichopoda HOM05D006919 ORTHO05D008705 8.8e-124 447.6 317 67.8
FvH4_5g17430 Fragaria vesca HOM05D006919 ORTHO05D008705 1.2e-123 447.2 319 69.6
Lj2g0027212 Lotus japonicus HOM05D006919 ORTHO05D008705 2.6e-123 446.0 304 73.0
PGSC0003DMG402005674 Solanum tuberosum HOM05D006919 ORTHO05D008705 2.6e-123 446.0 318 70.1
AUR62015799 Chenopodium quinoa HOM05D006919 ORTHO05D008705 5.7e-123 444.9 297 73.7
Migut.D01538 Erythranthe guttata HOM05D006919 ORTHO05D008705 9.8e-123 444.1 316 70.3
Cc04_g06200 Coffea canephora HOM05D006919 ORTHO05D008705 1.7e-122 443.4 325 67.1
arahy.Tifrunner.gnm1.ann1.95HZXM Arachis hypogaea HOM05D006919 ORTHO05D008705 3.7e-122 442.2 364 64.6
VMungo0464G0753 Vigna mungo HOM05D006919 ORTHO05D008705 4.8e-122 441.8 318 72.0
Cpa.g.sc3.392 Carica papaya HOM05D006919 ORTHO05D008705 2.4e-121 439.5 338 66.0
Oeu026273.1 Olea europaea HOM05D006919 ORTHO05D008705 2.4e-121 439.5 303 71.3
MSTRG.9306 Avicennia marina HOM05D006919 ORTHO05D008705 2.0e-120 436.4 315 67.9
Sed0003421 Sechium edule HOM05D006919 ORTHO05D008705 2.7e-120 436.0 304 70.1
Solyc03g118660.3 Solanum lycopersicum HOM05D006919 ORTHO05D008705 4.5e-120 435.3 304 70.4
PSO754G0044 Papaver somniferum HOM05D006919 ORTHO05D008705 5.9e-120 434.9 318 67.6
FAN13G2797 Fragaria x ananassa HOM05D006919 ORTHO05D008705 5.0e-119 431.8 306 68.6
CSS0013537 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 3.2e-118 429.1 320 70.0
FAN08G0969 Fragaria x ananassa HOM05D006919 ORTHO05D008705 3.2e-118 429.1 306 68.3
FAN04G0116 Fragaria x ananassa HOM05D006919 ORTHO05D008705 3.0e-116 422.5 307 67.8
ECA233G0189 Erigeron canadensis HOM05D006919 ORTHO05D008705 2.0e-115 419.9 314 65.6
HanXRQChr05g0142681 Helianthus annuus HOM05D006919 ORTHO05D008705 3.4e-115 419.1 318 64.2
Manes.06G005400 Manihot esculenta HOM05D006919 ORTHO05D008705 1.3e-114 417.2 269 76.6
Ciclev10010588m.g Citrus clementina HOM05D006919 ORTHO05D008705 2.2e-114 416.4 312 67.6
Lsat_1_v5_gn_8_720 Lactuca sativa HOM05D006919 ORTHO05D008705 2.8e-114 416.0 317 65.0
EL10Ac4g07782 Beta vulgaris HOM05D006919 ORTHO05D008705 2.3e-111 406.4 318 66.4
arahy.Tifrunner.gnm1.ann1.2R737Y Arachis hypogaea HOM05D006919 ORTHO05D008705 3.8e-111 405.6 318 67.0
Nitab4.5_0013135g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 8.0e-109 397.9 290 70.7
QL10p030230 Quercus lobata HOM05D006919 ORTHO05D008705 5.2e-108 395.2 298 66.4
arahy.Tifrunner.gnm1.ann1.54PB3V Arachis hypogaea HOM05D006919 ORTHO05D008705 2.0e-107 393.3 339 63.4
FAN18G1663 Fragaria x ananassa HOM05D006919 ORTHO05D008705 3.4e-107 392.5 306 65.4
HPP92_023812 Vanilla planifolia HOM05D006919 ORTHO05D008705 5.7e-107 391.7 316 64.9
ClCG04G010590 Citrullus lanatus HOM05D006919 ORTHO05D008705 2.2e-98 363.2 317 59.6
Ca_25336_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 4.6e-96 355.5 270 68.9
Ca_29640_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 4.6e-96 355.5 270 68.9
MELO3C002137.2 Cucumis melo HOM05D006919 ORTHO05D008705 1.5e-94 350.5 255 67.8
Eucgr.B00878 Eucalyptus grandis HOM05D006919 ORTHO05D008705 2.3e-92 343.2 233 69.5
Peaxi162Scf00314g00331 Petunia axillaris HOM05D006919 ORTHO05D008705 4.4e-91 339.0 248 66.5
Mapoly0012s0164 Marchantia polymorpha HOM05D006919 ORTHO05D008705 4.9e-90 335.5 324 52.8
AagrBONN_evm.TU.Sc2ySwM_344.2286 Anthoceros agrestis HOM05D006919 ORTHO05D008705 1.7e-87 327.0 315 51.4
CDE08G0345 Ceratophyllum demersum HOM05D006919 ORTHO05D008705 3.3e-86 322.8 319 52.7
vmacro16410 Vaccinium macrocarpon HOM05D006919 ORTHO05D008705 4.3e-86 322.4 256 65.6
Pp3c1_6570 Physcomitrium patens HOM05D006919 ORTHO05D008705 1.2e-83 314.3 317 49.8
Pp3c2_29770 Physcomitrium patens HOM05D006919 ORTHO05D008705 1.1e-81 307.8 315 48.9
MBI09_g15241_MAGBIO Magnolia biondii HOM05D006919 ORTHO05D008705 9.2e-81 304.7 216 69.9
Nitab4.5_0012026g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 7.8e-80 301.6 213 70.0
Glyma.U031615 Glycine max HOM05D006919 ORTHO05D008705 1.3e-74 284.3 181 75.1
CARHR038160 Cardamine hirsuta HOM05D006919 ORTHO05D008705 1.7e-74 283.9 193 70.5
Eucgr.B00996 Eucalyptus grandis HOM05D006919 ORTHO05D008705 1.0e-71 274.6 233 57.9
AagrBONN_evm.TU.Sc2ySwM_228.5103 Anthoceros agrestis HOM05D006919 ORTHO05D008705 3.9e-71 272.7 305 43.9
Haze_18872 Corylus avellana HOM05D006919 ORTHO05D008705 5.8e-67 258.8 337 46.6
SMO143G0218 Selaginella moellendorffii HOM05D006919 ORTHO05D008705 1.1e-65 254.6 267 51.7
CBR_g44935 Chara braunii HOM05D006919 ORTHO05D008705 1.5e-59 234.2 343 42.0
Cfa019651 Carpinus fangiana HOM05D006919 ORTHO05D008705 6.7e-55 218.8 146 72.6
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 1.4e-44 184.5 227 46.7
RcHm_v2.0_Chr5g0035741 Rosa chinensis HOM05D006919 ORTHO05D008705 1.5e-43 181.0 127 66.9
RcHm_v2.0_Chr7g0224581 Rosa chinensis HOM05D006919 ORTHO05D008705 3.2e-41 173.3 129 64.3
Lj9A419G30 Lonicera japonica HOM05D006919 ORTHO05D008705 2.9e-34 150.2 247 37.7
arahy.Tifrunner.gnm1.ann1.248BIT Arachis hypogaea HOM05D006919 ORTHO05D008705 5.1e-31 139.4 103 68.9
SEGI_02358 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 4.7e-24 116.3 93 60.2
RcHm_v2.0_Chr7g0212051 Rosa chinensis HOM05D006919 ORTHO05D008705 1.0e-23 115.2 88 65.9
CBR_g74660 Chara braunii HOM05D006919 ORTHO05D008705 1.7e-21 107.8 213 36.6
Lj9C419T19 Lonicera japonica HOM05D006919 ORTHO05D008705 1.7e-21 107.8 70 77.1
SEGI_39350 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 6.5e-10 69.3 72 52.8
HanXRQChr04g0100421 Helianthus annuus HOM05D003194 ORTHO05D003790 2.3e-07 60.8 274 23.0
Migut.F00173 Erythranthe guttata HOM05D003194 ORTHO05D003790 3.0e-07 60.5 274 22.3
vmacro06417 Vaccinium macrocarpon HOM05D003194 ORTHO05D003790 5.2e-07 59.7 291 22.0
AUR62017840 Chenopodium quinoa HOM05D003194 ORTHO05D003790 8.8e-07 58.9 274 22.6
ECA233G3510 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.0e-06 57.8 44 54.5
Nitab4.5_0000841g0050 Nicotiana tabacum HOM05D003194 ORTHO05D003790 2.0e-06 57.8 279 21.9
Ciclev10021339m.g Citrus clementina HOM05D003194 ORTHO05D003790 2.6e-06 57.4 279 21.1
Nitab4.5_0004109g0030 Nicotiana tabacum HOM05D003194 ORTHO05D003790 2.6e-06 57.4 279 21.9
Peaxi162Scf00077g00109 Petunia axillaris HOM05D003194 ORTHO05D003790 2.6e-06 57.4 279 21.5
Solyc04g050240.3 Solanum lycopersicum HOM05D003194 ORTHO05D003790 2.6e-06 57.4 279 21.5
Sopen04g021010 Solanum pennellii HOM05D003194 ORTHO05D003790 2.6e-06 57.4 279 21.5
TWI23G0656 Tripterygium wilfordii HOM05D003194 ORTHO05D003790 2.6e-06 57.4 274 21.5
Dinv29240 Davidia involucrata HOM05D003194 ORTHO05D003790 3.4e-06 57.0 274 21.9
Sc07g0004470 Simmondsia chinensis HOM05D003194 ORTHO05D003790 3.4e-06 57.0 274 22.6
Gorai.006G203000 Gossypium raimondii HOM05D003194 ORTHO05D003790 4.4e-06 56.6 280 22.1
Hma1.2p1_0512F.1_g169275 Hydrangea macrophylla HOM05D003194 ORTHO05D003790 4.4e-06 56.6 274 22.3
Sed0013788 Sechium edule HOM05D003194 ORTHO05D003790 4.4e-06 56.6 279 20.4
TWI39G0552 Tripterygium wilfordii HOM05D003194 ORTHO05D003790 4.4e-06 56.6 274 21.2
ClCG04G001480 Citrullus lanatus HOM05D003194 ORTHO05D003790 5.7e-06 56.2 279 20.4
MELO3C008978.2 Cucumis melo HOM05D003194 ORTHO05D003790 5.7e-06 56.2 279 20.4
CsaV3_4G031000 Cucumis sativus L. HOM05D003194 ORTHO05D003790 5.7e-06 56.2 279 20.4
Hund10221 Selenicereus undatus HOM05D003194 ORTHO05D003790 5.7e-06 56.2 274 22.6
CSS0005632 Camellia sinensis var. sinensis HOM05D003194 ORTHO05D003790 7.5e-06 55.8 274 22.3
Haze_00264 Corylus avellana HOM05D003194 ORTHO05D003790 7.5e-06 55.8 274 20.8
HanXRQChr04g0107111 Helianthus annuus HOM05D003194 ORTHO05D003790 7.5e-06 55.8 274 21.5
Rhsim09G0208000 Rhododendron simsii HOM05D003194 ORTHO05D003790 7.5e-06 55.8 283 22.3
vmacro10145 Vaccinium macrocarpon HOM05D003194 ORTHO05D003790 7.5e-06 55.8 274 21.9
CSS0046000 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D004872 9.8e-06 55.5 43 62.8
FvH4_7g32410 Fragaria vesca HOM05D003194 ORTHO05D003790 9.8e-06 55.5 274 21.2
FAN01G2702 Fragaria x ananassa HOM05D003194 ORTHO05D003790 9.8e-06 55.5 274 21.2
FAN03G1651 Fragaria x ananassa HOM05D003194 ORTHO05D003790 9.8e-06 55.5 274 21.2
FAN10G2660 Fragaria x ananassa HOM05D003194 ORTHO05D003790 9.8e-06 55.5 274 21.2
FAN10G2872 Fragaria x ananassa HOM05D003194 ORTHO05D003790 9.8e-06 55.5 274 21.2
RcHm_v2.0_Chr1g0381991 Rosa chinensis HOM05D003194 ORTHO05D003790 9.8e-06 55.5 274 21.2
GSVIVG01038607001 Vitis vinifera HOM05D003194 ORTHO05D003790 9.8e-06 55.5 279 21.1


User provided reference genes

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