Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24247 Nelumbo nucifera HOM05D003349 ORTHO05D003898 1.3e-52 209.5 109 100.0
Nn5g30180 Nelumbo nucifera HOM05D003349 ORTHO05D003898 6.5e-41 170.6 109 85.3
Nn2g15886 Nelumbo nucifera HOM05D003349 ORTHO05D003898 8.3e-28 127.1 73 91.8
Actinidia22087 Actinidia chinensis HOM05D003349 ORTHO05D003898 9.5e-24 113.6 106 65.1
Hma1.2p1_0376F.1_g139170 Hydrangea macrophylla HOM05D003349 ORTHO05D003898 9.5e-24 113.6 106 65.1
Rhsim03G0001200 Rhododendron simsii HOM05D003349 ORTHO05D003898 2.1e-23 112.5 106 65.1
Nitab4.5_0000001g0070 Nicotiana tabacum HOM05D003349 ORTHO05D003898 2.8e-23 112.1 106 64.2
vmacro12571 Vaccinium macrocarpon HOM05D003349 ORTHO05D003898 3.6e-23 111.7 106 65.1
Cc06_g22870 Coffea canephora HOM05D003349 ORTHO05D003898 4.7e-23 111.3 74 77.0
PGSC0003DMG400008643 Solanum tuberosum HOM05D003349 ORTHO05D003898 6.1e-23 110.9 106 63.2
CAN.G317.13 Capsicum annuum HOM05D003349 ORTHO05D003898 1.0e-22 110.2 96 66.7
Nn7g35824 Nelumbo nucifera HOM05D003349 ORTHO05D003898 1.4e-22 109.8 73 78.1
Ciclev10019371m.g Citrus clementina HOM05D003349 ORTHO05D003898 2.3e-22 109.0 98 66.3
Oeu012406.1 Olea europaea HOM05D003349 ORTHO05D003898 2.3e-22 109.0 74 79.7
Dinv37011 Davidia involucrata HOM05D003349 ORTHO05D003898 3.0e-22 108.6 74 79.7
HanXRQChr01g0024711 Helianthus annuus HOM05D003349 ORTHO05D003898 3.0e-22 108.6 106 62.3
CSS0039180 Camellia sinensis var. sinensis HOM05D003349 ORTHO05D003898 4.0e-22 108.2 102 63.7
Lsat_1_v5_gn_1_59620 Lactuca sativa HOM05D003349 ORTHO05D003898 4.0e-22 108.2 106 60.4
Peaxi162Scf00076g01031 Petunia axillaris HOM05D003349 ORTHO05D003898 4.0e-22 108.2 105 62.9
Sopen03g015010 Solanum pennellii HOM05D003349 ORTHO05D003898 4.0e-22 108.2 106 61.3
Lj1A1137T83 Lonicera japonica HOM05D003349 ORTHO05D003898 6.8e-22 107.5 74 77.0
BcaB01g02049 Brassica carinata HOM05D003349 ORTHO05D003898 8.9e-22 107.1 74 78.4
BcaNung04049 Brassica carinata HOM05D003349 ORTHO05D003898 8.9e-22 107.1 74 78.4
BcaNung04050 Brassica carinata HOM05D003349 ORTHO05D003898 8.9e-22 107.1 74 78.4
A09p01870 Brassica napus HOM05D003349 ORTHO05D003898 8.9e-22 107.1 74 78.4
C09p01910 Brassica napus HOM05D003349 ORTHO05D003898 8.9e-22 107.1 74 78.4
BolC9t53126H Brassica oleracea HOM05D003349 ORTHO05D003898 8.9e-22 107.1 74 78.4
BraA09t35838Z Brassica rapa HOM05D003349 ORTHO05D003898 8.9e-22 107.1 74 78.4
Duzib128G1865 Durio zibethinus HOM05D003349 ORTHO05D003898 8.9e-22 107.1 77 76.6
Manes.08G150100 Manihot esculenta HOM05D003349 ORTHO05D003898 8.9e-22 107.1 74 78.4
Thecc.05G293700 Theobroma cacao HOM05D003349 ORTHO05D003898 8.9e-22 107.1 77 76.6
Cpa.g.sc51.107 Carica papaya HOM05D003349 ORTHO05D003898 1.2e-21 106.7 72 80.6
Potri.013G058700 Populus trichocarpa HOM05D003349 ORTHO05D003898 1.5e-21 106.3 74 79.7
Aa31LG2G1970 Aethionema arabicum HOM05D003349 ORTHO05D003898 2.0e-21 105.9 74 78.4
ECA285G0003 Erigeron canadensis HOM05D003349 ORTHO05D003898 2.0e-21 105.9 77 74.0
Thhalv10028548m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 2.0e-21 105.9 74 78.4
PGR042G2987 Punica granatum HOM05D003349 ORTHO05D003898 2.0e-21 105.9 74 77.0
AL1G64640 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 2.6e-21 105.5 74 78.4
AT1G54385 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 2.6e-21 105.5 74 78.4
CARHR055490 Cardamine hirsuta HOM05D003349 ORTHO05D003898 2.6e-21 105.5 74 78.4
COL.COLO4_13609 Corchorus olitorius HOM05D003349 ORTHO05D003898 2.6e-21 105.5 77 75.3
Oeu060005.1 Olea europaea HOM05D003349 ORTHO05D003898 2.6e-21 105.5 71 80.3
Carub.0002s0958 Capsella rubella HOM05D003349 ORTHO05D003898 3.4e-21 105.1 74 77.0
Duzib177G0419 Durio zibethinus HOM05D003349 ORTHO05D003898 3.4e-21 105.1 77 75.3
Gohir.A11G259100 Gossypium hirsutum HOM05D003349 ORTHO05D003898 3.4e-21 105.1 77 75.3
Gohir.D11G269200 Gossypium hirsutum HOM05D003349 ORTHO05D003898 3.4e-21 105.1 77 75.3
Gorai.007G289100 Gossypium raimondii HOM05D003349 ORTHO05D003898 3.4e-21 105.1 77 75.3
Sabra19G0041800 Salix brachista HOM05D003349 ORTHO05D003898 3.4e-21 105.1 74 78.4
SGA_v2.0_scaffold118G32450 Striga asiatica HOM05D003349 ORTHO05D003898 3.4e-21 105.1 106 59.4
TAR636G3347 Trochodendron aralioides HOM05D003349 ORTHO05D003898 3.4e-21 105.1 74 78.4
Manes.09G142100 Manihot esculenta HOM05D003349 ORTHO05D003898 4.4e-21 104.8 74 77.0
Potri.019G033900 Populus trichocarpa HOM05D003349 ORTHO05D003898 4.4e-21 104.8 74 78.4
Prupe.7G003500 Prunus persica HOM05D003349 ORTHO05D003898 4.4e-21 104.8 96 64.6
Sabra13G0052200 Salix brachista HOM05D003349 ORTHO05D003898 4.4e-21 104.8 74 78.4
Sp6g02300 Schrenkiella parvula HOM05D003349 ORTHO05D003898 4.4e-21 104.8 74 77.0
SGA_v2.0_scaffold24G10518 Striga asiatica HOM05D003349 ORTHO05D003898 4.4e-21 104.8 106 58.5
Atru.chr2.1365 Acer truncatum HOM05D003349 ORTHO05D003898 5.7e-21 104.4 74 77.0
Migut.J01894 Erythranthe guttata HOM05D003349 ORTHO05D003898 5.7e-21 104.4 74 75.7
Medtr6g032885 Medicago truncatula HOM05D003349 ORTHO05D003898 5.7e-21 104.4 96 62.5
Psat1g096120 Pisum sativum HOM05D003349 ORTHO05D003898 5.7e-21 104.4 96 62.5
arahy.Tifrunner.gnm1.ann1.GFD0T8 Arachis hypogaea HOM05D003349 ORTHO05D003898 7.5e-21 104.0 77 72.7
arahy.Tifrunner.gnm1.ann1.N26BUN Arachis hypogaea HOM05D003349 ORTHO05D003898 7.5e-21 104.0 77 72.7
MSTRG.19938 Avicennia marina HOM05D003349 ORTHO05D003898 7.5e-21 104.0 74 75.7
CANSAT78G1787 Cannabis sativa HOM05D003349 ORTHO05D003898 7.5e-21 104.0 105 60.0
TPR.G34626 Trifolium pratense HOM05D003349 ORTHO05D003898 7.5e-21 104.0 96 62.5
Ca_21768_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 9.8e-21 103.6 106 57.5
Lsat_1_v5_gn_2_57641 Lactuca sativa HOM05D003349 ORTHO05D003898 9.8e-21 103.6 108 57.4
CDE07G0844 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 1.3e-20 103.2 74 78.4
Medtr0495s0010 Medicago truncatula HOM05D003349 ORTHO05D003898 1.3e-20 103.2 77 71.4
SalBow6G1268 Salvia bowleyana HOM05D003349 ORTHO05D003898 1.3e-20 103.2 74 75.7
Hund19241 Selenicereus undatus HOM05D003349 ORTHO05D003898 1.3e-20 103.2 74 74.3
THA.LOC104821510 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 1.3e-20 103.2 74 75.7
CDE06G0484 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 1.7e-20 102.8 74 77.0
ECA238G0201 Erigeron canadensis HOM05D003349 ORTHO05D003898 1.7e-20 102.8 106 57.5
HanXRQChr09g0266371 Helianthus annuus HOM05D003349 ORTHO05D003898 2.2e-20 102.4 99 61.6
Lj2A357T88 Lonicera japonica HOM05D003349 ORTHO05D003898 2.2e-20 102.4 106 58.5
Sabra11G0092800 Salix brachista HOM05D001236 ORTHO05D001090 2.2e-20 102.4 74 75.7
Lj2g0007320 Lotus japonicus HOM05D003349 ORTHO05D003898 2.8e-20 102.1 96 60.4
Sabra11G0089600 Salix brachista HOM05D003349 ORTHO05D003898 2.8e-20 102.1 74 75.7
TAR369G0075 Trochodendron aralioides HOM05D003349 ORTHO05D003898 2.8e-20 102.1 74 75.7
Ca_25618_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 3.7e-20 101.7 108 57.4
PSO339G2750 Papaver somniferum HOM05D003349 ORTHO05D003898 4.9e-20 101.3 74 73.0
PSO384G0567 Papaver somniferum HOM05D003349 ORTHO05D003898 4.9e-20 101.3 74 73.0
Lalb_Chr02g0157061 Lupinus albus HOM05D003349 ORTHO05D003898 6.3e-20 100.9 94 61.7
CiPaw.09G001500 Carya illinoinensis HOM05D003349 ORTHO05D003898 8.3e-20 100.5 77 74.0
Glyma.16G152900 Glycine max HOM05D003349 ORTHO05D003898 8.3e-20 100.5 77 70.1
Nitab4.5_0002825g0010 Nicotiana tabacum HOM05D003349 ORTHO05D003898 8.3e-20 100.5 94 63.8
RcHm_v2.0_Chr3g0497191 Rosa chinensis HOM05D003349 ORTHO05D003898 1.1e-19 100.1 96 60.4
Glyma.02G071700 Glycine max HOM05D003349 ORTHO05D003898 1.4e-19 99.8 77 68.8
TAR623G1645 Trochodendron aralioides HOM05D003349 ORTHO05D003898 1.4e-19 99.8 74 75.7
Glyma.19G110600 Glycine max HOM05D003349 ORTHO05D003898 1.8e-19 99.4 76 69.7
TWI34G0012 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 1.8e-19 99.4 74 74.3
FvH4_1g28060 Fragaria vesca HOM05D003349 ORTHO05D003898 2.4e-19 99.0 77 70.1
FAN19G0867 Fragaria x ananassa HOM05D003349 ORTHO05D003898 2.4e-19 99.0 77 70.1
FAN23G0882 Fragaria x ananassa HOM05D003349 ORTHO05D003898 2.4e-19 99.0 77 70.1
FAN26G3194 Fragaria x ananassa HOM05D003349 ORTHO05D003898 2.4e-19 99.0 77 70.1
Lalb_Chr21g0317171 Lupinus albus HOM05D003349 ORTHO05D003898 2.4e-19 99.0 104 56.7
TWI60G1263 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 2.4e-19 99.0 74 70.3
EL10Ac3g06814 Beta vulgaris HOM05D003349 ORTHO05D003898 3.1e-19 98.6 74 71.6
CiPaw.06G089600 Carya illinoinensis HOM05D003349 ORTHO05D003898 3.1e-19 98.6 77 72.7
Lalb_Chr06g0173961 Lupinus albus HOM05D003349 ORTHO05D003898 3.1e-19 98.6 75 72.0
GSVIVG01033391001 Vitis vinifera HOM05D003349 ORTHO05D003898 3.1e-19 98.6 72 75.0
Eucgr.K01495 Eucalyptus grandis HOM05D003349 ORTHO05D003898 4.1e-19 98.2 74 73.0
QL07p020065 Quercus lobata HOM05D003349 ORTHO05D003898 4.1e-19 98.2 77 72.7
SHI21767 Sapria himalayana HOM05D003349 ORTHO05D003898 5.4e-19 97.8 74 71.6
TAR633G2041 Trochodendron aralioides HOM05D003349 ORTHO05D003898 5.4e-19 97.8 74 70.3
Haze_19412 Corylus avellana HOM05D003349 ORTHO05D003898 7.0e-19 97.4 77 71.4
Sc19g0006470 Simmondsia chinensis HOM05D003349 ORTHO05D003898 7.0e-19 97.4 74 73.0
Cpa.g.sc51.102 Carica papaya HOM05D003349 ORTHO05D003898 1.2e-18 96.7 98 58.2
ATR0697G133 Amborella trichopoda HOM05D003349 ORTHO05D003898 1.6e-18 96.3 85 61.2
CsaV3_4G013310 Cucumis sativus L. HOM05D003349 ORTHO05D003898 1.6e-18 96.3 91 61.5
Glyma.16G041800 Glycine max HOM05D003349 ORTHO05D003898 1.6e-18 96.3 76 67.1
ClCG04G005280 Citrullus lanatus HOM05D003349 ORTHO05D003898 2.0e-18 95.9 91 61.5
MELO3C008798.2 Cucumis melo HOM05D003349 ORTHO05D003898 2.0e-18 95.9 91 61.5
DCAR_019880 Daucus carota HOM05D003349 ORTHO05D003898 2.0e-18 95.9 74 70.3
DCAR_009680 Daucus carota HOM05D003349 ORTHO05D003898 2.7e-18 95.5 74 67.6
Phvul.004G079400 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 3.5e-18 95.1 97 59.8
unitig_899.g15643 Utricularia gibba HOM05D003349 ORTHO05D003898 4.5e-18 94.7 77 66.2
Aqoxy1G00500 Aquilegia oxysepala HOM05D003349 ORTHO05D003898 7.8e-18 94.0 91 62.6
FvH4_5g28880 Fragaria vesca HOM05D003349 ORTHO05D003898 1.0e-17 93.6 77 68.8
FAN13G1757 Fragaria x ananassa HOM05D003349 ORTHO05D003898 1.0e-17 93.6 77 68.8
FAN18G3983 Fragaria x ananassa HOM05D003349 ORTHO05D003898 1.0e-17 93.6 77 68.8
Lj1g0027644 Lotus japonicus HOM05D003349 ORTHO05D003898 1.0e-17 93.6 76 65.8
Sed0027207 Sechium edule HOM05D003349 ORTHO05D003898 1.0e-17 93.6 91 60.4
HPP92_004178 Vanilla planifolia HOM05D003349 ORTHO05D003898 1.7e-17 92.8 73 67.1
AUR62032685 Chenopodium quinoa HOM05D003349 ORTHO05D003898 2.3e-17 92.4 74 71.6
MD12G1003000 Malus domestica HOM05D003349 ORTHO05D003898 3.8e-17 91.7 91 63.7
AUR62032062 Chenopodium quinoa HOM05D003349 ORTHO05D003898 5.0e-17 91.3 74 71.6
Os11g0580000 Oryza sativa ssp. japonica HOM05D003349 ORTHO05D003898 6.6e-17 90.9 75 65.3
Sed0005648 Sechium edule HOM05D003349 ORTHO05D003898 6.6e-17 90.9 91 58.2
CANSAT56G0778 Cannabis sativa HOM05D003349 ORTHO05D003898 8.6e-17 90.5 99 54.5
Sabra15G0069100 Salix brachista HOM05D003349 ORTHO05D003898 8.6e-17 90.5 88 59.1
Sabra15G0069300 Salix brachista HOM05D003349 ORTHO05D003898 8.6e-17 90.5 88 59.1
Sabra15G0072800 Salix brachista HOM05D003349 ORTHO05D003898 8.6e-17 90.5 88 59.1
VMungo1383G1871 Vigna mungo HOM05D003349 ORTHO05D003898 1.1e-16 90.1 76 63.2
Phvul.001G110000 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 1.5e-16 89.7 95 60.0
HanXRQChr16g0523881 Helianthus annuus HOM05D003349 ORTHO05D003898 2.5e-16 89.0 92 57.6
Zm00001eb200470 Zea mays HOM05D003349 ORTHO05D003898 1.2e-15 86.7 81 58.0
PGR142G2675 Punica granatum HOM05D003349 ORTHO05D003898 3.0e-14 82.0 74 58.1
THA.LOC104820732 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 8.9e-14 80.5 77 55.8
Actinidia30557 Actinidia chinensis HOM05D003349 ORTHO05D003898 1.2e-13 80.1 80 62.5
Solyc03g062700.4 Solanum lycopersicum HOM05D003349 ORTHO05D003898 1.2e-13 80.1 80 61.2
arahy.Tifrunner.gnm1.ann1.L5U228 Arachis hypogaea HOM05D003349 ORTHO05D003898 3.4e-13 78.6 77 57.1
BcaC05g30237 Brassica carinata HOM05D003349 ORTHO05D003898 1.3e-12 76.6 77 55.8
BcaC05g30298 Brassica carinata HOM05D003349 ORTHO05D003898 1.3e-12 76.6 77 55.8
arahy.Tifrunner.gnm1.ann1.CJ7Z8Q Arachis hypogaea HOM05D003349 ORTHO05D003898 2.2e-12 75.9 77 55.8
HanXRQChr03g0090421 Helianthus annuus HOM05D003349 ORTHO05D003898 2.2e-12 75.9 73 56.2
MD14G1002300 Malus domestica HOM05D003349 ORTHO05D003898 3.7e-12 75.1 70 64.3
BolC1t05788H Brassica oleracea HOM05D003349 ORTHO05D003898 8.3e-12 73.9 78 52.6
Thhalv10022309m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 1.1e-11 73.6 77 54.5
Mapoly0001s0286 Marchantia polymorpha HOM05D003349 ORTHO05D003898 1.1e-11 73.6 71 54.9
BraA05t23079Z Brassica rapa HOM05D003349 ORTHO05D003898 1.4e-11 73.2 77 54.5
SEGI_12350 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 1.4e-11 73.2 73 49.3
BcaC05g29887 Brassica carinata HOM05D003349 ORTHO05D003898 1.9e-11 72.8 77 53.2
BolC5t34961H Brassica oleracea HOM05D003349 ORTHO05D003898 1.9e-11 72.8 77 53.2
AT3G03970 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 2.4e-11 72.4 96 47.9
A01p41230 Brassica napus HOM05D003349 ORTHO05D003898 2.4e-11 72.4 78 52.6
BNapus_Darmor_BZH_scaffold_78p00480 Brassica napus HOM05D003349 ORTHO05D003898 2.4e-11 72.4 78 52.6
BraA01t04546Z Brassica rapa HOM05D003349 ORTHO05D003898 2.4e-11 72.4 78 51.3
AL3G13880 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 3.2e-11 72.0 74 52.7
Sp3g02940 Schrenkiella parvula HOM05D003349 ORTHO05D003898 3.2e-11 72.0 77 53.2
A05p43390 Brassica napus HOM05D003349 ORTHO05D003898 4.1e-11 71.6 77 51.9
Pp3c5_7300 Physcomitrium patens HOM05D003349 ORTHO05D003898 4.1e-11 71.6 69 53.6
C05p63090 Brassica napus HOM05D003349 ORTHO05D003898 5.4e-11 71.2 77 51.9
Carub.0003s0322 Capsella rubella HOM05D003349 ORTHO05D003898 7.0e-11 70.9 77 51.9
BraA09t41584Z Brassica rapa HOM05D003349 ORTHO05D003898 2.0e-10 69.3 78 51.3
THA.LOC104802863 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 7.8e-10 67.4 77 50.6
BolC1t05779H Brassica oleracea HOM05D003349 ORTHO05D003898 1.0e-09 67.0 69 52.2
Aa31LG5G14550 Aethionema arabicum HOM05D003349 ORTHO05D003898 1.7e-09 66.2 96 45.8
arahy.Tifrunner.gnm1.ann1.0MAW8U Arachis hypogaea HOM05D003349 ORTHO05D003898 1.5e-08 63.2 42 76.2
Pp3c22_2440 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.9e-08 62.8 71 42.3
AagrBONN_evm.TU.Sc2ySwM_117.2517 Anthoceros agrestis HOM05D003349 ORTHO05D003898 2.5e-08 62.4 73 45.2
CARHR078110 Cardamine hirsuta HOM05D003349 ORTHO05D003898 3.3e-08 62.0 77 48.1
Sabra18G0055700 Salix brachista HOM05D003349 ORTHO05D350099 9.5e-08 60.5 62 58.1
Pp3c3_27710 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.2e-07 60.1 71 43.7
Sabra18G0055600 Salix brachista HOM05D003349 ORTHO05D350155 1.2e-07 60.1 62 53.2
Pp3c18_19210 Physcomitrium patens HOM05D003349 ORTHO05D003898 3.6e-07 58.5 71 40.8
SMO116G0096 Selaginella moellendorffii HOM05D003118 ORTHO05D003898 1.8e-06 56.2 68 42.6
Sc13g0002710 Simmondsia chinensis HOM05D003349 ORTHO05D003898 3.1e-06 55.5 48 62.5
Pp3c19_3520 Physcomitrium patens HOM05D003349 ORTHO05D003898 5.2e-06 54.7 71 39.4
Pp3c19_3524 Physcomitrium patens HOM05D003349 ORTHO05D003898 5.2e-06 54.7 71 39.4


User provided reference genes

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