Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.3e-281 971.5 465 100.0
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.2e-197 693.3 465 70.3
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 3.2e-177 625.5 463 63.3
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 5.4e-177 624.8 466 62.2
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.2e-170 602.8 462 60.2
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 2.3e-167 592.8 466 60.7
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.9e-166 589.7 465 58.7
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.3e-166 589.0 462 60.6
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 5.6e-166 588.2 467 59.3
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.6e-165 586.6 462 58.4
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.8e-164 583.2 467 58.7
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.3e-159 566.2 462 58.2
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.3e-159 566.2 465 56.1
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 5.1e-159 565.1 461 57.7
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.5e-158 563.5 462 58.7
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.5e-158 563.5 409 65.0
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 8.1e-157 557.8 465 56.3
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 2.4e-156 556.2 458 57.6
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 1.7e-154 550.1 513 52.0
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 3.8e-154 548.9 462 55.0
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 6.4e-154 548.1 543 50.1
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.4e-153 547.0 464 55.6
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 5.4e-153 545.0 464 56.5
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 9.3e-153 544.3 424 59.2
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.2e-152 543.9 461 56.0
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 2.1e-152 543.1 461 55.3
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 3.9e-151 538.9 461 55.5
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 6.6e-151 538.1 463 55.9
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.6e-149 533.5 456 55.5
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 3.6e-149 532.3 463 55.1
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 3.6e-149 532.3 452 55.1
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 7.6e-147 524.6 464 52.8
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.7e-146 523.5 462 53.7
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.4e-145 519.6 465 55.7
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 7.1e-145 518.1 465 55.5
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 7.1e-145 518.1 440 55.9
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 5.1e-143 511.9 466 55.6
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 3.3e-142 509.2 464 52.4
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.6e-141 506.9 483 53.8
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 3.6e-141 505.8 459 50.5
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 6.2e-141 505.0 464 51.9
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 6.2e-141 505.0 474 51.9
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.4e-140 503.8 462 53.5
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.8e-140 503.4 459 52.1
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 1.8e-140 503.4 462 53.5
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 8.4e-138 494.6 458 51.3
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.4e-137 493.8 463 51.4
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.4e-137 493.8 380 62.6
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.3e-134 482.6 465 52.9
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 3.7e-133 479.2 460 50.7
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.9e-129 466.8 465 48.8
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 4.2e-129 465.7 471 48.8
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 5.1e-127 458.8 528 47.2
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.5e-121 439.9 415 52.0
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 3.5e-120 436.0 376 56.9
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 3.3e-118 429.5 470 46.4
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 3.3e-118 429.5 465 47.1
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 9.7e-118 427.9 468 47.0
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.8e-117 425.6 460 46.5
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 4.8e-117 425.6 460 46.3
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 8.2e-117 424.9 460 46.3
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 1.8e-116 423.7 462 46.1
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 5.5e-113 412.1 471 45.4
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 9.4e-113 411.4 462 43.3
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.6e-112 409.5 460 46.7
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.4e-111 407.5 409 49.1
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.3e-111 406.8 460 46.5
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 5.1e-111 405.6 478 44.4
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.5e-110 404.1 460 45.0
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 5.7e-110 402.1 466 45.5
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.1e-108 397.9 378 50.5
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.8e-108 397.1 451 45.9
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.6e-107 393.3 464 42.9
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 3.4e-107 392.9 463 43.4
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 4.5e-107 392.5 465 43.2
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.5e-107 392.5 465 43.2
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.0e-106 391.3 457 44.9
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.2e-106 390.2 451 45.5
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 5.0e-106 389.0 464 42.7
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.9e-105 387.1 464 42.5
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.5e-105 386.7 465 43.0
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 1.0e-103 381.3 385 51.9
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 1.8e-103 380.6 424 46.2
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.7e-103 378.6 468 43.2
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.6e-102 376.7 466 42.1
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 9.7e-102 374.8 460 44.1
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 3.7e-101 372.9 458 43.9
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.2e-101 371.7 500 39.8
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.2e-99 367.9 458 43.0
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.0e-99 367.1 477 42.3
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 5.9e-99 365.5 458 44.8
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.7e-98 364.0 261 64.4
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.2e-98 363.6 494 39.7
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.9e-97 360.5 461 41.4
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.9e-97 360.5 462 42.2
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.5e-97 360.1 463 42.3
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 4.2e-97 359.4 446 41.9
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.6e-96 357.5 467 40.7
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 2.1e-96 357.1 454 41.0
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 8.0e-96 355.1 387 47.3
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.3e-95 353.6 461 41.2
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.3e-95 353.6 463 41.3
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 4.0e-95 352.8 475 41.9
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.0e-94 350.5 464 40.3
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 7.5e-94 348.6 477 41.1
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 9.7e-94 348.2 477 39.8
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 9.7e-94 348.2 477 39.8
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 2.2e-93 347.1 464 40.3
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.7e-93 346.3 459 41.2
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.1e-92 344.7 465 39.8
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.4e-92 344.4 478 40.2
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 3.1e-92 343.2 462 39.8
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 9.1e-92 341.7 464 39.7
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.2e-91 341.3 462 40.5
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.5e-91 339.3 474 40.7
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.0e-90 338.2 309 53.4
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.9e-89 334.0 492 37.0
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 7.2e-89 332.0 460 40.2
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.8e-87 325.5 334 48.2
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 3.1e-84 316.6 344 48.3
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 4.5e-83 312.8 381 43.3
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 2.7e-80 303.5 465 37.8
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 4.7e-80 302.8 492 36.8
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 6.1e-80 302.4 491 36.3
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 3.0e-79 300.1 501 34.5
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 3.4e-78 296.6 471 37.6
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 4.4e-78 296.2 471 38.2
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 4.4e-78 296.2 471 38.2
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 3.1e-76 290.0 469 38.6
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 3.1e-76 290.0 472 38.8
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 9.2e-76 288.5 472 36.9
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 1.6e-75 287.7 312 48.7
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 2.7e-75 287.0 472 37.9
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 4.7e-72 276.2 260 52.7
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.4e-71 274.6 297 46.8
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 1.4e-71 274.6 256 55.1
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.5e-70 271.2 307 45.6
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 9.8e-70 268.5 502 35.9
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 3.7e-69 266.5 456 35.3
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.1e-68 263.1 315 42.2
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 1.2e-62 245.0 426 35.7
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 3.1e-55 220.3 294 43.2
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.5e-54 218.0 357 35.9
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.0e-51 206.1 137 67.2
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 8.6e-50 202.2 252 40.5
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 4.3e-49 199.9 193 52.3
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.4e-47 194.9 302 39.1
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.8e-47 194.5 155 59.4
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 1.9e-41 174.5 182 46.2
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 7.8e-35 152.5 203 44.3
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 1.9e-33 147.9 315 30.2
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 5.3e-31 139.8 425 26.6
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.9e-25 121.3 190 36.8
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 2.8e-24 117.5 88 58.0
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.4e-23 115.2 132 43.9
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 3.5e-19 100.5 138 41.3
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.0e-18 99.0 132 41.7
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 4.8e-16 90.1 111 48.6
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.2e-16 89.7 83 45.8
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 9.0e-15 85.9 61 60.7
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 2.9e-13 80.9 81 51.9
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 4.2e-12 77.0 60 61.7
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 2.3e-10 71.2 77 41.6
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 3.9e-10 70.5 65 47.7
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 2.1e-08 64.7 91 39.6
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 6.3e-08 63.2 82 43.9


User provided reference genes

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