Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24068 Nelumbo nucifera HOM05D000667 ORTHO05D004096 6.3e-51 203.8 99 100.0
Nn4g24436 Nelumbo nucifera HOM05D000667 ORTHO05D004096 5.7e-44 180.6 98 88.8
Nn8g40514 Nelumbo nucifera HOM05D000667 ORTHO05D004096 4.8e-43 177.6 98 87.8
Nn2g12659 Nelumbo nucifera HOM05D000667 ORTHO05D004096 3.4e-36 154.8 98 75.5
TAR625G0547 Trochodendron aralioides HOM05D000667 ORTHO05D004096 4.1e-34 147.9 102 71.6
Cpa.g.sc23.19 Carica papaya HOM05D000667 ORTHO05D004096 2.8e-30 135.2 98 67.3
Duzib187G0973 Durio zibethinus HOM05D000667 ORTHO05D004096 1.0e-29 133.3 99 64.6
COL.COLO4_19029 Corchorus olitorius HOM05D000667 ORTHO05D004096 6.8e-29 130.6 81 75.3
Ciclev10008681m.g Citrus clementina HOM05D000667 ORTHO05D004096 4.4e-28 127.9 99 60.6
Thecc.09G007600 Theobroma cacao HOM05D000667 ORTHO05D004096 4.4e-28 127.9 99 61.6
CDE05G0359 Ceratophyllum demersum HOM05D000667 ORTHO05D004096 1.3e-27 126.3 89 69.7
Manes.15G098200 Manihot esculenta HOM05D000667 ORTHO05D004096 1.7e-27 125.9 81 72.8
Potri.018G007100 Populus trichocarpa HOM05D000667 ORTHO05D004096 2.9e-27 125.2 87 67.8
Gorai.009G067500 Gossypium raimondii HOM05D000667 ORTHO05D004096 8.3e-27 123.6 86 65.1
Aqoxy7G03123 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 1.1e-26 123.2 95 63.2
MBI14_g22131_MAGBIO Magnolia biondii HOM05D000667 ORTHO05D004096 2.4e-26 122.1 87 70.1
Atru.chr7.2649 Acer truncatum HOM05D000667 ORTHO05D004096 3.2e-26 121.7 98 59.2
PGR044G0476 Punica granatum HOM05D000667 ORTHO05D004096 3.2e-26 121.7 89 64.0
Gohir.A05G064100 Gossypium hirsutum HOM05D000667 ORTHO05D004096 1.6e-25 119.4 86 62.8
MD08G1127900 Malus domestica HOM05D000667 ORTHO05D004096 2.0e-25 119.0 85 64.7
CANSAT25G0354 Cannabis sativa HOM05D000667 ORTHO05D004096 2.7e-25 118.6 94 61.7
QL12p025198 Quercus lobata HOM05D000667 ORTHO05D004096 7.8e-25 117.1 98 59.2
TWI34G0704 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 7.8e-25 117.1 83 65.1
FAN15G0719 Fragaria x ananassa HOM05D000667 ORTHO05D004096 1.0e-24 116.7 87 60.9
Sabra18G0014800 Salix brachista HOM05D000667 ORTHO05D004096 1.0e-24 116.7 93 58.1
FvH4_2g36671 Fragaria vesca HOM05D000667 ORTHO05D004096 1.3e-24 116.3 87 60.9
MD15G1107400 Malus domestica HOM05D000667 ORTHO05D004096 1.3e-24 116.3 83 63.9
Prupe.1G459700 Prunus persica HOM05D000667 ORTHO05D004096 1.3e-24 116.3 85 63.5
Haze_21754 Corylus avellana HOM05D000667 ORTHO05D004096 3.9e-24 114.8 98 58.2
FAN27G0657 Fragaria x ananassa HOM05D000667 ORTHO05D004096 5.0e-24 114.4 87 62.1
RcHm_v2.0_Chr6g0305031 Rosa chinensis HOM05D000667 ORTHO05D004096 5.0e-24 114.4 87 60.9
CiPaw.07G212200 Carya illinoinensis HOM05D000667 ORTHO05D004096 6.6e-24 114.0 93 59.1
FAN20G2017 Fragaria x ananassa HOM05D000667 ORTHO05D004096 6.6e-24 114.0 103 56.3
Sp4g03540 Schrenkiella parvula HOM05D000667 ORTHO05D004096 8.6e-24 113.6 97 56.7
TPR.G12382 Trifolium pratense HOM05D000667 ORTHO05D004096 1.5e-23 112.8 89 62.9
CiPaw.07G212000 Carya illinoinensis HOM05D000667 ORTHO05D004096 2.5e-23 112.1 93 58.1
CARHR117500 Cardamine hirsuta HOM05D000667 ORTHO05D004096 5.6e-23 110.9 99 55.6
VMungo1309G0228 Vigna mungo HOM05D000667 ORTHO05D004096 5.6e-23 110.9 82 63.4
BcaC07g40923 Brassica carinata HOM05D000667 ORTHO05D004096 7.3e-23 110.5 74 67.6
C08p39180 Brassica napus HOM05D000667 ORTHO05D004096 7.3e-23 110.5 74 67.6
BolC8t51491H Brassica oleracea HOM05D000667 ORTHO05D004096 7.3e-23 110.5 74 67.6
Carub.0004s0390 Capsella rubella HOM05D000667 ORTHO05D004096 7.3e-23 110.5 100 56.0
Glyma.04G075700 Glycine max HOM05D000667 ORTHO05D004096 7.3e-23 110.5 89 62.9
Glyma.06G076900 Glycine max HOM05D000667 ORTHO05D004096 7.3e-23 110.5 89 62.9
Medtr3g108860 Medicago truncatula HOM05D000667 ORTHO05D004096 1.2e-22 109.8 90 61.1
Phvul.009G101500 Phaseolus vulgaris HOM05D000667 ORTHO05D004096 1.2e-22 109.8 82 63.4
AL4G15090 Arabidopsis lyrata HOM05D000667 ORTHO05D004096 1.6e-22 109.4 82 61.0
Lj1g0003153 Lotus japonicus HOM05D000667 ORTHO05D004096 1.6e-22 109.4 82 67.1
AT2G24540 Arabidopsis thaliana HOM05D000667 ORTHO05D004096 2.8e-22 108.6 82 62.2
Thhalv10000205m.g Eutrema salsugineum HOM05D000667 ORTHO05D004096 1.4e-21 106.3 93 57.0
A09p56230 Brassica napus HOM05D000667 ORTHO05D004096 1.8e-21 105.9 74 64.9
BraA09t41017Z Brassica rapa HOM05D000667 ORTHO05D004096 1.8e-21 105.9 74 64.9
Lalb_Chr23g0269131 Lupinus albus HOM05D000667 ORTHO05D004096 1.2e-20 103.2 85 58.8
Psat0s1809g0080 Pisum sativum HOM05D000667 ORTHO05D004096 1.2e-20 103.2 86 59.3
Ca_15665_v3 Cicer arietinum L. HOM05D000667 ORTHO05D004096 2.6e-20 102.1 74 68.9
arahy.Tifrunner.gnm1.ann1.1Y4NGA Arachis hypogaea HOM05D000667 ORTHO05D004096 7.5e-20 100.5 100 56.0
arahy.Tifrunner.gnm1.ann1.AAI9J8 Arachis hypogaea HOM05D000667 ORTHO05D004096 9.8e-20 100.1 100 57.0
TWI75G0786 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 4.1e-18 94.7 88 54.5
ATR0580G133 Amborella trichopoda HOM05D000667 ORTHO05D004096 7.0e-18 94.0 82 54.9
AagrBONN_evm.TU.Sc2ySwM_369.512 Anthoceros agrestis HOM05D000667 ORTHO05D004096 3.1e-13 78.6 77 45.5
TPR.G26252 Trifolium pratense HOM05D000667 ORTHO05D004096 4.4e-12 74.7 101 41.6
Ca_00536_v3 Cicer arietinum L. HOM05D000667 ORTHO05D004096 1.7e-11 72.8 101 38.6
Thecc.06G149500 Theobroma cacao HOM05D000667 ORTHO05D004096 2.2e-11 72.4 98 39.8
Psat1g188160 Pisum sativum HOM05D000667 ORTHO05D004096 6.4e-11 70.9 75 46.7
Sed0011115 Sechium edule HOM05D000667 ORTHO05D004096 8.3e-11 70.5 89 42.7
arahy.Tifrunner.gnm1.ann1.BT8YZU Arachis hypogaea HOM05D000667 ORTHO05D004096 1.4e-10 69.7 89 40.4
arahy.Tifrunner.gnm1.ann1.MZ7XDG Arachis hypogaea HOM05D000667 ORTHO05D004096 1.4e-10 69.7 89 40.4
MBI02_g36351_MAGBIO Magnolia biondii HOM05D000667 ORTHO05D004096 1.4e-10 69.7 75 46.7
TWI73G0887 Tripterygium wilfordii HOM05D000667 ORTHO05D004096 1.4e-10 69.7 82 42.7
VMungo0540G0780 Vigna mungo HOM05D000667 ORTHO05D004096 1.4e-10 69.7 96 38.5
GSVIVG01021505001 Vitis vinifera HOM05D000667 ORTHO05D004096 1.4e-10 69.7 75 48.0
PGR042G2716 Punica granatum HOM05D000667 ORTHO05D004096 1.9e-10 69.3 98 38.8
Atru.chr10.1214 Acer truncatum HOM05D000667 ORTHO05D004096 2.4e-10 68.9 98 37.8
ATR1098G029 Amborella trichopoda HOM05D000667 ORTHO05D004096 2.4e-10 68.9 92 42.4
Cpa.g.sc246.7 Carica papaya HOM05D000667 ORTHO05D004096 2.4e-10 68.9 75 45.3
Hma1.2p1_0020F.1_g014030 Hydrangea macrophylla HOM05D000667 ORTHO05D004096 2.4e-10 68.9 75 48.0
Lj6g0000657 Lotus japonicus HOM05D000667 ORTHO05D004096 2.4e-10 68.9 98 38.8
Medtr2g019230 Medicago truncatula HOM05D000667 ORTHO05D004096 2.4e-10 68.9 98 34.7
MELO3C002742.2 Cucumis melo HOM05D000667 ORTHO05D004096 3.2e-10 68.6 88 42.0
CsaV3_1G032360 Cucumis sativus L. HOM05D000667 ORTHO05D004096 3.2e-10 68.6 88 42.0
Gohir.A09G077500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 3.2e-10 68.6 75 46.7
MD05G1283000 Malus domestica HOM05D000667 ORTHO05D004096 3.2e-10 68.6 98 37.8
Potri.006G193800 Populus trichocarpa HOM05D000667 ORTHO05D004096 3.2e-10 68.6 75 46.7
RcHm_v2.0_Chr5g0014291 Rosa chinensis HOM05D000667 ORTHO05D004096 3.2e-10 68.6 100 39.0
EL10Ac8g20542 Beta vulgaris HOM05D000667 ORTHO05D004096 4.1e-10 68.2 75 46.7
Glyma.15G093300 Glycine max HOM05D000667 ORTHO05D004096 4.1e-10 68.2 98 37.8
Prupe.4G081700 Prunus persica HOM05D000667 ORTHO05D004096 4.1e-10 68.2 98 37.8
CSS0039480 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 5.4e-10 67.8 75 46.7
CSS0050416 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 5.4e-10 67.8 75 46.7
ClCG03G006780 Citrullus lanatus HOM05D000667 ORTHO05D004096 5.4e-10 67.8 88 42.0
Ciclev10015483m.g Citrus clementina HOM05D000667 ORTHO05D004096 5.4e-10 67.8 98 37.8
FvH4_3g05461 Fragaria vesca HOM05D000667 ORTHO05D004096 5.4e-10 67.8 98 37.8
Manes.17G071100 Manihot esculenta HOM05D000667 ORTHO05D004096 5.4e-10 67.8 75 45.3
Nn3g20642 Nelumbo nucifera HOM05D000667 ORTHO05D004096 5.4e-10 67.8 98 38.8
Aa31LG6G5580 Aethionema arabicum HOM05D000667 ORTHO05D004096 7.1e-10 67.4 75 46.7
COL.COLO4_31061 Corchorus olitorius HOM05D000667 ORTHO05D004096 7.1e-10 67.4 98 37.8
Duzib235G0040 Durio zibethinus HOM05D000667 ORTHO05D004096 7.1e-10 67.4 75 45.3
Gohir.A10G041600 Gossypium hirsutum HOM05D000667 ORTHO05D004096 7.1e-10 67.4 75 45.3
Gohir.D09G077366 Gossypium hirsutum HOM05D000667 ORTHO05D004096 7.1e-10 67.4 75 46.7
Gohir.D09G077500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 7.1e-10 67.4 75 46.7
Gorai.006G092600 Gossypium raimondii HOM05D000667 ORTHO05D004096 7.1e-10 67.4 75 46.7
Lsat_1_v5_gn_4_29341 Lactuca sativa HOM05D000667 ORTHO05D004096 7.1e-10 67.4 75 45.3
Lalb_Chr18g0055381 Lupinus albus HOM05D000667 ORTHO05D004096 7.1e-10 67.4 98 37.8
CANSAT35G0944 Cannabis sativa HOM05D000667 ORTHO05D004096 9.2e-10 67.0 75 45.3
Manes.15G122200 Manihot esculenta HOM05D000667 ORTHO05D004096 9.2e-10 67.0 98 35.7
PSO541G1865 Papaver somniferum HOM05D000667 ORTHO05D004096 9.2e-10 67.0 75 44.0
PSO675G5528 Papaver somniferum HOM05D000667 ORTHO05D004096 9.2e-10 67.0 98 35.7
QL05p057661 Quercus lobata HOM05D000667 ORTHO05D004096 1.2e-09 66.6 75 44.0
Sed0013854 Sechium edule HOM05D000667 ORTHO05D004096 1.2e-09 66.6 82 42.7
SMO174G0059 Selaginella moellendorffii HOM05D000667 ORTHO05D004096 1.2e-09 66.6 93 33.3
Ah.14g088850 Amaranthus hybridus HOM05D000667 ORTHO05D004096 1.6e-09 66.2 75 46.7
Lsat_1_v5_gn_1_116980 Lactuca sativa HOM05D000667 ORTHO05D004096 1.6e-09 66.2 98 38.8
HanXRQChr01g0003361 Helianthus annuus HOM05D000667 ORTHO05D004096 2.1e-09 65.9 75 45.3
Duzib160G0105 Durio zibethinus HOM05D000667 ORTHO05D004096 2.7e-09 65.5 75 44.0
Sabra06G0148800 Salix brachista HOM05D000667 ORTHO05D004096 2.7e-09 65.5 75 45.3
Dinv32241 Davidia involucrata HOM05D000667 ORTHO05D004096 3.5e-09 65.1 75 45.3
MD10G1261300 Malus domestica HOM05D000667 ORTHO05D004096 3.5e-09 65.1 80 43.8
AUR62014707 Chenopodium quinoa HOM05D000667 ORTHO05D004096 4.6e-09 64.7 75 45.3
Aqoxy5G03131 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 6.0e-09 64.3 98 36.7
Gohir.D10G042500 Gossypium hirsutum HOM05D000667 ORTHO05D004096 6.0e-09 64.3 75 44.0
Gorai.011G045000 Gossypium raimondii HOM05D000667 ORTHO05D004096 6.0e-09 64.3 75 44.0
Sc24g0001650 Simmondsia chinensis HOM05D000667 ORTHO05D004096 6.0e-09 64.3 74 43.2
Zm00001eb389500 Zea mays HOM05D000667 ORTHO05D004096 6.0e-09 64.3 105 34.3
TAR629G0334 Trochodendron aralioides HOM05D000667 ORTHO05D004096 7.8e-09 63.9 75 44.0
Aqoxy1G01694 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 1.0e-08 63.5 75 44.0
Migut.H01358 Erythranthe guttata HOM05D000667 ORTHO05D004096 1.3e-08 63.2 82 39.0
Peaxi162Scf00307g00074 Petunia axillaris HOM05D000667 ORTHO05D004096 1.3e-08 63.2 97 38.1
HanXRQChr11g0341261 Helianthus annuus HOM05D000667 ORTHO05D004096 1.7e-08 62.8 75 42.7
Nitab4.5_0000501g0040 Nicotiana tabacum HOM05D000667 ORTHO05D004096 2.3e-08 62.4 97 38.1
Nitab4.5_0004527g0010 Nicotiana tabacum HOM05D000667 ORTHO05D004096 2.3e-08 62.4 97 38.1
Phvul.006G165500 Phaseolus vulgaris HOM05D000667 ORTHO05D004096 2.3e-08 62.4 98 36.7
Rhsim13G0114300 Rhododendron simsii HOM05D000667 ORTHO05D004096 2.3e-08 62.4 75 44.0
Cc00_g01110 Coffea canephora HOM05D000667 ORTHO05D004096 3.0e-08 62.0 97 39.2
Lj2P303T17 Lonicera japonica HOM05D000667 ORTHO05D004096 3.0e-08 62.0 75 42.7
Actinidia27057 Actinidia chinensis HOM05D000667 ORTHO05D004096 3.9e-08 61.6 81 40.7
CAN.G641.46 Capsicum annuum HOM05D000667 ORTHO05D004096 5.1e-08 61.2 75 41.3
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 6.6e-08 60.8 75 42.7
Zm00001eb389480 Zea mays HOM05D000667 ORTHO05D004096 6.6e-08 60.8 62 45.2
CSS0002746 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 8.6e-08 60.5 98 37.8
CSS0004812 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 8.6e-08 60.5 98 37.8
Sopen02g006160 Solanum pennellii HOM05D000667 ORTHO05D004096 1.1e-07 60.1 75 41.3
PGSC0003DMG400003174 Solanum tuberosum HOM05D000667 ORTHO05D004096 1.1e-07 60.1 75 41.3
Oeu034141.1 Olea europaea HOM05D000667 ORTHO05D004096 1.5e-07 59.7 75 41.3
Solyc02g021600.1 Solanum lycopersicum HOM05D000667 ORTHO05D004096 1.5e-07 59.7 75 41.3
THA.LOC104820652 Tarenaya hassleriana HOM05D000667 ORTHO05D004096 1.5e-07 59.7 95 37.9
Thhalv10007818m.g Eutrema salsugineum HOM05D000667 ORTHO05D004096 1.9e-07 59.3 88 38.6
AL1G43990 Arabidopsis lyrata HOM05D000667 ORTHO05D004096 4.3e-07 58.2 96 37.5
AT1G30090 Arabidopsis thaliana HOM05D000667 ORTHO05D004096 5.6e-07 57.8 96 36.5
Hund21282 Selenicereus undatus HOM05D000667 ORTHO05D004096 7.3e-07 57.4 78 38.5
Aqoxy1G01690 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 1.2e-06 56.6 74 41.9
Oeu031276.1 Olea europaea HOM05D000667 ORTHO05D004096 1.2e-06 56.6 97 32.0
Os06g0655500 Oryza sativa ssp. japonica HOM05D000667 ORTHO05D004096 1.2e-06 56.6 42 57.1
Atru.chr3.2322 Acer truncatum HOM05D000667 ORTHO05D002614 1.6e-06 56.2 88 33.0
BcaB07g32610 Brassica carinata HOM05D000667 ORTHO05D004096 1.6e-06 56.2 85 36.5
Sp1g25950 Schrenkiella parvula HOM05D000667 ORTHO05D004096 1.6e-06 56.2 75 40.0
HPP92_007946 Vanilla planifolia HOM05D000667 ORTHO05D002614 1.6e-06 56.2 83 33.7
BcaC05g27027 Brassica carinata HOM05D000667 ORTHO05D004096 2.1e-06 55.8 96 35.4
A09p36430 Brassica napus HOM05D000667 ORTHO05D004096 2.1e-06 55.8 96 35.4
C05p28890 Brassica napus HOM05D000667 ORTHO05D004096 2.1e-06 55.8 96 35.4
BolC5t31609H Brassica oleracea HOM05D000667 ORTHO05D004096 2.1e-06 55.8 96 35.4
BraA09t39166Z Brassica rapa HOM05D000667 ORTHO05D004096 2.1e-06 55.8 96 35.4
HanXRQChr16g0525601 Helianthus annuus HOM05D000667 ORTHO05D004096 2.1e-06 55.8 87 36.8
Nitab4.5_0002744g0040 Nicotiana tabacum HOM05D000667 ORTHO05D004096 2.1e-06 55.8 92 38.0
Duzib150G1026 Durio zibethinus HOM05D000667 ORTHO05D002614 2.8e-06 55.5 86 33.7
unitig_8.g4886 Utricularia gibba HOM05D000667 ORTHO05D004096 2.8e-06 55.5 95 34.7
HPP92_009599 Vanilla planifolia HOM05D000667 ORTHO05D002614 2.8e-06 55.5 82 32.9
Zm00001eb048290 Zea mays HOM05D000667 ORTHO05D002614 2.8e-06 55.5 85 32.9
Migut.H01356 Erythranthe guttata HOM05D000667 ORTHO05D004096 3.6e-06 55.1 72 38.9
PGR102G0154 Punica granatum HOM05D000667 ORTHO05D002614 3.6e-06 55.1 83 33.7
SGA_v2.0_scaffold106G30656 Striga asiatica HOM05D000667 ORTHO05D004096 3.6e-06 55.1 74 39.2
Carub.0001s2831 Capsella rubella HOM05D000667 ORTHO05D004096 4.7e-06 54.7 75 38.7
Manes.12G013000 Manihot esculenta HOM05D000667 ORTHO05D003843 4.7e-06 54.7 83 30.1
Manes.13G018300 Manihot esculenta HOM05D000667 ORTHO05D003843 4.7e-06 54.7 74 32.4
MSTRG.16248 Avicennia marina HOM05D000667 ORTHO05D004096 6.2e-06 54.3 75 37.3
CSS0003462 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D002614 6.2e-06 54.3 82 34.1
CARHR029320 Cardamine hirsuta HOM05D000667 ORTHO05D004096 6.2e-06 54.3 75 40.0
HanXRQChr13g0405141 Helianthus annuus HOM05D000667 ORTHO05D002614 6.2e-06 54.3 85 31.8
THA.LOC104811032 Tarenaya hassleriana HOM05D000667 ORTHO05D002614 6.2e-06 54.3 83 34.9
vmacro20538 Vaccinium macrocarpon HOM05D000667 ORTHO05D002614 6.2e-06 54.3 82 34.1
vmacro20601 Vaccinium macrocarpon HOM05D000667 ORTHO05D002614 6.2e-06 54.3 82 34.1
Cfa013278 Carpinus fangiana HOM05D002778 ORTHO05D003112 8.1e-06 53.9 46 58.7


User provided reference genes

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