Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 0.0e+00 1741.1 972 100.0
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1235.3 976 74.1
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1184.5 975 64.9
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 0.0e+00 1177.5 995 70.6
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1153.3 963 65.9
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1149.4 963 66.1
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1130.5 989 65.2
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1125.9 921 71.2
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1125.9 981 68.4
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1125.2 970 64.7
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1123.2 959 68.5
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1119.8 964 69.5
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1116.7 958 64.7
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1116.7 975 64.6
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1116.3 1043 61.2
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1114.8 967 69.3
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1101.3 979 63.6
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1101.3 990 64.3
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1098.2 973 67.2
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1095.5 970 62.5
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1092.8 958 69.2
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1090.5 981 67.2
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1090.1 989 61.2
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1089.3 984 61.5
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1088.9 981 62.6
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1088.9 986 61.3
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1082.0 967 62.8
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1080.5 979 62.7
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 0.0e+00 1080.1 958 63.5
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 0.0e+00 1079.7 992 62.0
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 0.0e+00 1078.9 967 66.8
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 0.0e+00 1078.2 954 67.1
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1077.8 981 61.3
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 6.6e-312 1073.5 981 61.4
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 6.6e-312 1073.5 969 61.6
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 4.7e-311 1071.2 955 66.1
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 6.0e-311 1070.8 1010 59.0
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 1.0e-310 1070.1 965 61.6
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.0e-310 1070.1 954 66.8
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 1.0e-310 1070.1 960 65.2
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 1.7e-310 1069.3 961 66.8
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 1.5e-309 1066.2 963 65.9
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 1.5e-309 1066.2 960 67.5
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 4.3e-309 1064.7 991 62.0
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 1.2e-308 1063.1 967 61.4
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.2e-308 1063.1 993 60.2
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 3.6e-308 1061.6 976 60.2
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 6.1e-308 1060.8 965 60.1
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 2.3e-307 1058.9 968 61.3
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 5.2e-307 1057.7 976 58.6
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 8.9e-307 1057.0 971 65.8
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 2.2e-305 1052.4 983 58.1
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 4.9e-305 1051.2 997 60.2
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 8.3e-305 1050.4 958 65.2
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 9.2e-304 1047.0 976 60.6
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 3.5e-303 1045.0 1020 58.2
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 3.5e-303 1045.0 960 60.5
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 7.8e-303 1043.9 961 66.0
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 2.3e-302 1042.3 973 65.5
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 3.0e-302 1042.0 960 64.8
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.5e-301 1039.6 966 65.5
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 4.3e-301 1038.1 957 65.9
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 2.3e-299 1032.3 971 64.9
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 2.3e-299 1032.3 951 65.3
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 3.4e-298 1028.5 929 62.0
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 5.8e-298 1027.7 1025 62.6
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 3.5e-295 1018.5 1018 58.0
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 4.6e-295 1018.1 963 60.1
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 5.1e-294 1014.6 972 56.0
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 6.6e-294 1014.2 1005 57.5
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 1.6e-292 1009.6 979 59.6
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.6e-292 1009.6 985 63.8
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 1.1e-291 1006.9 981 59.0
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.3e-291 1005.7 1014 57.3
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 7.5e-290 1000.7 967 58.1
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 2.2e-289 999.2 958 64.4
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 1.6e-287 993.0 985 58.4
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 6.6e-286 987.6 963 63.9
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 1.9e-285 986.1 961 63.7
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 4.7e-284 981.5 965 62.3
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 1.3e-273 946.8 827 64.1
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 6.0e-271 937.9 964 54.8
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 2.3e-270 936.0 962 59.4
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 8.1e-268 927.5 970 60.0
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 6.9e-267 924.5 966 53.8
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.1e-264 917.1 963 60.1
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.1e-264 917.1 963 60.1
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 1.4e-264 916.8 964 59.1
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 2.7e-263 912.5 940 60.5
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 7.9e-263 911.0 956 59.7
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 1.8e-262 909.8 956 59.5
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 3.9e-262 908.7 956 59.6
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 8.7e-262 907.5 940 61.0
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.9e-261 906.4 936 60.7
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 3.3e-261 905.6 973 59.8
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 2.0e-258 896.3 963 52.4
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 1.1e-256 890.6 937 58.8
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 6.0e-255 884.8 831 63.7
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 1.0e-249 867.5 1019 51.1
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 7.4e-229 798.1 1009 50.4
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 2.8e-228 796.2 893 52.2
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 6.7e-222 775.0 772 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 3.9e-193 679.5 991 45.4
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 8.1e-183 645.2 992 47.3
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 2.6e-165 587.0 813 50.6
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 2.7e-162 577.0 607 57.5
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.3e-143 515.0 503 58.4
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.7e-140 504.6 471 58.8
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.1e-136 491.9 656 44.7
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 4.2e-123 446.8 806 37.1
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 6.8e-89 333.2 911 30.3
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 6.3e-87 326.6 847 30.8
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 3.3e-75 287.7 371 48.5
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 1.7e-60 238.8 437 41.4
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 7.3e-59 233.4 809 24.4
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 4.7e-50 204.1 172 61.6
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 3.1e-49 201.4 234 46.6
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 1.0e-44 186.4 217 44.7
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 2.6e-24 118.6 80 72.5
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.2e-23 115.5 67 76.1
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 2.5e-22 112.1 90 62.2
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 1.2e-21 109.8 90 61.1
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 1.1e-19 103.2 106 53.8
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 3.3e-19 101.7 90 61.1
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 2.1e-18 99.0 109 47.7
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 3.7e-18 98.2 66 74.2
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 9.0e-17 93.6 158 40.5
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.8e-12 79.3 205 30.2
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 3.7e-10 71.6 199 33.7
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 8.2e-10 70.5 37 86.5
TAR622G0109 Trochodendron aralioides HOM05D048081 ORTHO05D051495 1.5e-08 66.2 55 61.8


User provided reference genes

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