Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23405 Nelumbo nucifera HOM05D002068 ORTHO05D002029 3.0e-44 181.4 88 100.0
Nn1g08045 Nelumbo nucifera HOM05D002068 ORTHO05D002029 5.3e-25 117.5 92 70.7
TAR375G0554 Trochodendron aralioides HOM05D002068 ORTHO05D002029 3.2e-22 108.2 84 70.2
CiPaw.12G063800 Carya illinoinensis HOM05D002068 ORTHO05D002029 3.5e-21 104.8 89 64.0
QL12p005199 Quercus lobata HOM05D002068 ORTHO05D002029 4.6e-21 104.4 89 62.9
Dinv25215 Davidia involucrata HOM05D002068 ORTHO05D002029 1.0e-20 103.2 96 63.5
Potri.001G142400 Populus trichocarpa HOM05D002068 ORTHO05D002029 4.3e-19 97.8 92 62.0
CiPaw.11G093300 Carya illinoinensis HOM05D002068 ORTHO05D002029 9.7e-19 96.7 90 62.2
Cfa012439 Carpinus fangiana HOM05D002068 ORTHO05D002029 2.2e-18 95.5 89 59.6
Actinidia14810 Actinidia chinensis HOM05D002068 ORTHO05D002029 2.8e-18 95.1 95 57.9
RcHm_v2.0_Chr7g0209711 Rosa chinensis HOM05D002068 ORTHO05D002029 6.3e-18 94.0 90 58.9
CAN.G1381.5 Capsicum annuum HOM05D002068 ORTHO05D002029 1.1e-17 93.2 98 56.1
Nitab4.5_0000256g0320 Nicotiana tabacum HOM05D002068 ORTHO05D002029 1.1e-17 93.2 95 57.9
Haze_08229 Corylus avellana HOM05D002068 ORTHO05D002029 3.1e-17 91.7 89 58.4
Peaxi162Scf00615g00064 Petunia axillaris HOM05D002068 ORTHO05D002029 3.1e-17 91.7 92 58.7
Sopen06g021390 Solanum pennellii HOM05D002068 ORTHO05D002029 3.1e-17 91.7 96 57.3
Dinv28957 Davidia involucrata HOM05D002068 ORTHO05D002029 4.1e-17 91.3 97 54.6
Manes.05G009900 Manihot esculenta HOM05D002068 ORTHO05D002029 4.1e-17 91.3 90 58.9
Sabra01G0111200 Salix brachista HOM05D002068 ORTHO05D002029 5.3e-17 90.9 93 59.1
PGSC0003DMG400002107 Solanum tuberosum HOM05D002068 ORTHO05D002029 5.3e-17 90.9 94 58.5
FvH4_4g21960 Fragaria vesca HOM05D002068 ORTHO05D002029 6.9e-17 90.5 89 59.6
Nitab4.5_0004604g0010 Nicotiana tabacum HOM05D002068 ORTHO05D002029 6.9e-17 90.5 96 58.3
CSS0037727 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 1.2e-16 89.7 99 55.6
CSS0039799 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 1.2e-16 89.7 99 55.6
Cc08_g02760 Coffea canephora HOM05D002068 ORTHO05D002029 1.2e-16 89.7 94 62.8
Potri.003G091800 Populus trichocarpa HOM05D002068 ORTHO05D002029 1.2e-16 89.7 101 53.5
Actinidia03376 Actinidia chinensis HOM05D002068 ORTHO05D002029 2.6e-16 88.6 99 52.5
TWI81G0802 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 2.6e-16 88.6 102 49.0
FAN07G0940 Fragaria x ananassa HOM05D002068 ORTHO05D002029 4.5e-16 87.8 90 57.8
CSS0014279 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 1.0e-15 86.7 94 53.2
Ca_06078_v3 Cicer arietinum L. HOM05D002068 ORTHO05D002029 1.3e-15 86.3 88 54.5
MD14G1120900 Malus domestica HOM05D002068 ORTHO05D002029 1.3e-15 86.3 90 55.6
CANSAT21G2072 Cannabis sativa HOM05D002068 ORTHO05D002029 1.7e-15 85.9 89 53.9
TWI60G1070 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 1.7e-15 85.9 96 47.9
vmacro00330 Vaccinium macrocarpon HOM05D002068 ORTHO05D002029 1.7e-15 85.9 99 52.5
Prupe.5G036600 Prunus persica HOM05D002068 ORTHO05D002029 2.2e-15 85.5 90 56.7
Duzib084G1376 Durio zibethinus HOM05D002068 ORTHO05D002029 2.9e-15 85.1 95 50.5
TWI15G0848 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 2.9e-15 85.1 96 47.9
Peaxi162Scf00460g00033 Petunia axillaris HOM05D002068 ORTHO05D002029 3.8e-15 84.7 97 53.6
Hma1.2p1_1063F.1_g253550 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 6.5e-15 84.0 91 52.7
Lj8C300T9 Lonicera japonica HOM05D002068 ORTHO05D002029 6.5e-15 84.0 96 53.1
Hma1.2p1_2704F.1_g327150 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 8.5e-15 83.6 91 52.7
Thecc.03G227900 Theobroma cacao HOM05D002068 ORTHO05D002029 1.1e-14 83.2 96 49.0
Aqoxy3G02351 Aquilegia oxysepala HOM05D002068 ORTHO05D002029 1.4e-14 82.8 90 53.3
Eucgr.D02200 Eucalyptus grandis HOM05D002068 ORTHO05D002029 1.9e-14 82.4 88 53.4
DCAR_008272 Daucus carota HOM05D002068 ORTHO05D002029 9.4e-14 80.1 99 50.5
Sabra03G0061400 Salix brachista HOM05D002068 ORTHO05D002029 9.4e-14 80.1 98 50.0
THA.LOC104814442 Tarenaya hassleriana HOM05D002068 ORTHO05D002029 1.2e-13 79.7 88 53.4
VMungo1215G2655 Vigna mungo HOM05D002068 ORTHO05D002029 2.1e-13 79.0 93 51.6
Solyc06g061190.1 Solanum lycopersicum HOM05D002068 ORTHO05D002029 2.7e-13 78.6 96 51.0
Oeu006980.1 Olea europaea HOM05D002068 ORTHO05D002029 3.6e-13 78.2 91 51.6
Oeu006981.1 Olea europaea HOM05D002068 ORTHO05D002029 3.6e-13 78.2 91 51.6
DCAR_005628 Daucus carota HOM05D002068 ORTHO05D002029 6.1e-13 77.4 100 47.0
TAR374G0127 Trochodendron aralioides HOM05D002068 ORTHO05D002029 6.1e-13 77.4 82 58.5
Phvul.002G141800 Phaseolus vulgaris HOM05D002068 ORTHO05D002029 1.0e-12 76.6 93 50.5
GSVIVG01013160001 Vitis vinifera HOM05D002068 ORTHO05D002029 1.0e-12 76.6 83 50.6
arahy.Tifrunner.gnm1.ann1.Q5RTUN Arachis hypogaea HOM05D002068 ORTHO05D002029 2.3e-12 75.5 93 52.7
arahy.Tifrunner.gnm1.ann1.VYGU2E Arachis hypogaea HOM05D002068 ORTHO05D002029 2.3e-12 75.5 93 52.7
Psat2g136560 Pisum sativum HOM05D002068 ORTHO05D002029 3.0e-12 75.1 83 48.2
Lj2g0016669 Lotus japonicus HOM05D002068 ORTHO05D002029 3.9e-12 74.7 89 50.6
Medtr5g030570 Medicago truncatula HOM05D002068 ORTHO05D002029 3.9e-12 74.7 83 48.2
CARHR129400 Cardamine hirsuta HOM05D002068 ORTHO05D002029 5.1e-12 74.3 82 52.4
Duzib205G1382 Durio zibethinus HOM05D002068 ORTHO05D002029 5.1e-12 74.3 94 48.9
Migut.E00932 Erythranthe guttata HOM05D002068 ORTHO05D002029 6.7e-12 73.9 95 49.5
Rhsim07G0126700 Rhododendron simsii HOM05D002068 ORTHO05D002029 1.5e-11 72.8 103 47.6
arahy.Tifrunner.gnm1.ann1.RMYT06 Arachis hypogaea HOM05D002068 ORTHO05D002029 2.0e-11 72.4 99 46.5
MSTRG.12156 Avicennia marina HOM05D002068 ORTHO05D002029 2.0e-11 72.4 101 47.5
ATR1133G059 Amborella trichopoda HOM05D002068 ORTHO05D002029 2.5e-11 72.0 103 48.5
CDE03G0421 Ceratophyllum demersum HOM05D002068 ORTHO05D002029 2.5e-11 72.0 104 46.2
MELO3C013853.2 Cucumis melo HOM05D002068 ORTHO05D002029 2.5e-11 72.0 91 49.5
CsaV3_3G001730 Cucumis sativus L. HOM05D002068 ORTHO05D002029 2.5e-11 72.0 91 49.5
Ciclev10012154m.g Citrus clementina HOM05D002068 ORTHO05D002029 3.3e-11 71.6 101 43.6
Cpa.g.sc71.70 Carica papaya HOM05D002068 ORTHO05D002029 4.3e-11 71.2 89 44.9
CDE06G0671 Ceratophyllum demersum HOM05D002068 ORTHO05D002029 4.3e-11 71.2 98 43.9
Sed0013007 Sechium edule HOM05D002068 ORTHO05D002029 4.3e-11 71.2 91 47.3
Duzib068G0736 Durio zibethinus HOM05D002068 ORTHO05D002029 5.7e-11 70.9 92 47.8
Lalb_Chr16g0381391 Lupinus albus HOM05D002068 ORTHO05D002029 9.7e-11 70.1 89 50.6
unitig_8.g3918 Utricularia gibba HOM05D002068 ORTHO05D002029 9.7e-11 70.1 111 44.1
TPR.G1043 Trifolium pratense HOM05D002068 ORTHO05D002029 2.2e-10 68.9 94 46.8
AL4G31260 Arabidopsis lyrata HOM05D002068 ORTHO05D002029 2.8e-10 68.6 87 48.3
THA.LOC104807950 Tarenaya hassleriana HOM05D002068 ORTHO05D002029 2.8e-10 68.6 93 45.2
COL.COLO4_13969 Corchorus olitorius HOM05D002068 ORTHO05D002029 3.7e-10 68.2 105 42.9
Gohir.D03G171200 Gossypium hirsutum HOM05D002068 ORTHO05D002029 3.7e-10 68.2 100 45.0
Gorai.003G181800 Gossypium raimondii HOM05D002068 ORTHO05D002029 3.7e-10 68.2 100 45.0
Hma1.2p1_0303F.1_g119120 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 6.3e-10 67.4 98 45.9
Sp4g17450 Schrenkiella parvula HOM05D002068 ORTHO05D002029 8.2e-10 67.0 83 49.4
Sed0021104 Sechium edule HOM05D002068 ORTHO05D002029 1.1e-09 66.6 90 44.4
BcaB02g09468 Brassica carinata HOM05D002068 ORTHO05D002029 1.8e-09 65.9 89 47.2
Thhalv10016759m.g Eutrema salsugineum HOM05D002068 ORTHO05D002029 1.8e-09 65.9 80 48.8
Gorai.006G216500 Gossypium raimondii HOM05D002068 ORTHO05D002029 1.8e-09 65.9 87 44.8
Lalb_Chr05g0216091 Lupinus albus HOM05D002068 ORTHO05D002029 1.8e-09 65.9 89 48.3
AT2G35230 Arabidopsis thaliana HOM05D002068 ORTHO05D002029 2.4e-09 65.5 82 48.8
MD06G1101200 Malus domestica HOM05D002068 ORTHO05D002029 2.4e-09 65.5 88 44.3
Atru.chr6.1710 Acer truncatum HOM05D002068 ORTHO05D002029 6.9e-09 63.9 103 46.6
CsaV3_3G049180 Cucumis sativus L. HOM05D002068 ORTHO05D002029 1.2e-08 63.2 97 46.4
PGR031G2163 Punica granatum HOM05D002068 ORTHO05D002029 1.2e-08 63.2 89 41.6
BcaB06g28833 Brassica carinata HOM05D002068 ORTHO05D002029 1.5e-08 62.8 83 45.8
BraA05t19991Z Brassica rapa HOM05D002068 ORTHO05D002029 3.4e-08 61.6 80 46.2
Lsat_1_v5_gn_6_65520 Lactuca sativa HOM05D002068 ORTHO05D002029 3.4e-08 61.6 89 43.8
BcaC02g11626 Brassica carinata HOM05D002068 ORTHO05D002029 5.9e-08 60.8 86 45.3
C04p12950 Brassica napus HOM05D002068 ORTHO05D002029 5.9e-08 60.8 86 45.3
BolC4t22938H Brassica oleracea HOM05D002068 ORTHO05D002029 5.9e-08 60.8 86 45.3
unitig_22.g5497 Utricularia gibba HOM05D000381 ORTHO05D002029 7.7e-08 60.5 110 40.0
A04p26780 Brassica napus HOM05D002068 ORTHO05D002029 2.2e-07 58.9 81 45.7
Aa31LG2G13360 Aethionema arabicum HOM05D002068 ORTHO05D002029 2.9e-07 58.5 93 45.2
A05p10530 Brassica napus HOM05D002068 ORTHO05D002029 2.9e-07 58.5 80 45.0
BcaC02g07727 Brassica carinata HOM05D002068 ORTHO05D002029 3.8e-07 58.2 81 45.7
Oeu020141.1 Olea europaea HOM05D002068 ORTHO05D002029 6.5e-07 57.4 88 46.6
BraA04t18182Z Brassica rapa HOM05D002068 ORTHO05D002029 8.5e-07 57.0 80 43.8
HanXRQChr13g0414131 Helianthus annuus HOM05D002068 ORTHO05D002029 8.5e-07 57.0 108 42.6
C04p64180 Brassica napus HOM05D002068 ORTHO05D002029 1.1e-06 56.6 83 44.6
ECA233G6139 Erigeron canadensis HOM05D002068 ORTHO05D002029 1.1e-06 56.6 89 48.3
Carub.0004s1693 Capsella rubella HOM05D002068 ORTHO05D002029 2.5e-06 55.5 82 42.7
BolC4t27901H Brassica oleracea HOM05D002068 ORTHO05D002029 3.2e-06 55.1 81 44.4


User provided reference genes

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