Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 1.4e-60 236.5 125 100.0
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 4.9e-53 211.5 127 89.8
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.0e-50 203.8 127 86.6
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.0e-50 203.8 124 89.5
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.0e-50 203.8 124 89.5
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.3e-50 203.4 125 84.8
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 5.1e-50 201.4 123 85.4
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.5e-49 199.9 124 86.3
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.5e-49 199.9 124 86.3
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.5e-49 199.9 124 86.3
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.5e-49 199.9 123 84.6
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 1.9e-49 199.5 123 84.6
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.9e-49 199.5 121 87.6
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 2.5e-49 199.1 123 86.2
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.5e-49 199.1 121 86.0
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.3e-49 198.4 121 87.6
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.6e-49 198.0 121 86.8
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 5.6e-49 198.0 128 84.4
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.3e-48 196.8 126 85.7
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.6e-48 196.4 120 89.2
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 2.1e-48 196.1 123 87.0
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 2.1e-48 196.1 123 87.0
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.1e-48 196.1 121 85.1
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 2.1e-48 196.1 121 84.3
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 2.1e-48 196.1 123 84.6
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 4.8e-48 194.9 126 84.1
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 6.2e-48 194.5 121 84.3
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 1.1e-47 193.7 123 82.9
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.1e-47 193.7 121 84.3
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.4e-47 193.4 120 85.0
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.8e-47 193.0 121 83.5
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 2.4e-47 192.6 123 82.9
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 3.1e-47 192.2 128 82.0
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 3.1e-47 192.2 122 82.8
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 4.0e-47 191.8 123 83.7
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 5.3e-47 191.4 128 81.2
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 6.9e-47 191.0 125 80.8
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 9.0e-47 190.7 136 75.7
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.2e-46 190.3 121 83.5
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.5e-46 189.9 123 84.6
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 3.4e-46 188.7 123 82.9
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.5e-46 188.3 128 81.2
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 4.5e-46 188.3 123 82.9
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 7.6e-46 187.6 120 80.8
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 7.6e-46 187.6 126 80.2
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 7.6e-46 187.6 123 82.9
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 7.6e-46 187.6 124 80.6
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 7.6e-46 187.6 128 80.5
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 9.9e-46 187.2 120 83.3
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 9.9e-46 187.2 125 80.0
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.3e-45 186.8 128 80.5
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 1.7e-45 186.4 123 81.3
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.2e-45 186.0 124 79.8
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 3.8e-45 185.3 125 79.2
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 3.8e-45 185.3 120 82.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 4.9e-45 184.9 120 80.0
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 4.9e-45 184.9 120 80.8
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 6.4e-45 184.5 121 78.5
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.1e-44 183.7 128 78.1
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.4e-44 183.3 128 80.5
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 1.9e-44 183.0 125 78.4
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 2.4e-44 182.6 124 77.4
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 2.4e-44 182.6 124 77.4
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 3.2e-44 182.2 123 76.4
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 3.2e-44 182.2 124 77.4
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 5.5e-44 181.4 122 76.2
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 5.5e-44 181.4 122 77.9
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 5.5e-44 181.4 125 76.0
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 9.3e-44 180.6 120 77.5
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.2e-43 180.3 120 77.5
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.2e-43 180.3 120 77.5
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.2e-43 180.3 120 77.5
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.2e-43 180.3 120 77.5
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 1.6e-43 179.9 120 78.3
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 1.6e-43 179.9 120 77.5
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.6e-43 179.9 125 77.6
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 2.1e-43 179.5 121 78.5
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 2.1e-43 179.5 123 77.2
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 3.5e-43 178.7 121 79.3
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 3.5e-43 178.7 121 76.0
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 4.6e-43 178.3 120 75.8
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 4.6e-43 178.3 128 75.8
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 6.0e-43 177.9 120 76.7
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.0e-42 177.2 126 74.6
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.8e-42 176.4 117 77.8
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 2.3e-42 176.0 122 76.2
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.3e-42 176.0 120 76.7
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 2.3e-42 176.0 123 76.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.9e-42 175.3 120 75.8
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 3.9e-42 175.3 121 76.0
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 5.1e-42 174.9 123 77.2
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 8.7e-42 174.1 129 72.9
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.9e-41 172.9 121 78.5
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.3e-40 170.2 123 72.4
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.3e-40 170.2 126 70.6
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 2.1e-40 169.5 120 75.0
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.1e-39 167.2 121 74.4
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 1.1e-39 167.2 123 69.1
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.8e-39 166.4 117 74.4
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.8e-39 166.4 121 76.9
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.1e-39 165.6 117 73.5
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.3e-39 164.9 117 73.5
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 9.0e-39 164.1 120 71.7
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 9.0e-39 164.1 117 73.5
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 9.0e-39 164.1 117 73.5
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 9.0e-39 164.1 116 75.0
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 7.6e-38 161.0 121 71.1
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 1.0e-37 160.6 202 51.0
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 2.9e-37 159.1 126 68.3
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.9e-37 159.1 121 66.1
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 2.9e-37 159.1 121 73.6
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 3.8e-37 158.7 118 68.6
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.1e-36 157.1 123 75.6
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 1.2e-35 153.7 191 51.8
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.8e-34 149.8 94 85.1
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 3.0e-34 149.1 125 64.0
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 5.1e-34 148.3 121 65.3
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 8.7e-34 147.5 99 78.8
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.1e-33 147.1 96 82.3
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.9e-33 146.4 99 78.8
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.3e-32 143.7 101 76.2
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 4.8e-32 141.7 120 63.3
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 4.8e-32 141.7 117 64.1
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 5.3e-31 138.3 124 58.1
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.5e-30 136.7 117 60.7
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 4.5e-30 135.2 90 80.0
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.3e-29 133.7 121 57.9
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.1e-28 130.6 121 56.2
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.4e-28 130.2 83 85.5
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 1.4e-28 130.2 125 56.0
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.8e-23 113.2 101 62.4
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 7.2e-20 101.3 102 58.8
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.6e-19 100.1 91 59.3
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.6e-19 100.1 91 59.3
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.9e-18 95.5 98 60.2
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 8.8e-18 94.4 64 71.9
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 7.2e-12 74.7 48 70.8
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 5.2e-10 68.6 68 58.8
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 8.8e-10 67.8 68 58.8
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 8.8e-10 67.8 68 58.8
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 3.7e-08 62.4 46 63.0


User provided reference genes

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